OS = linux

#---- compilers ----
export G77 = gfortran
#export G77 = gfortran
export CC = gcc 
# export CXX = c++
export AS = as

# these are the lines to change:-------
export JDK_ROOT=/usr/lib/jvm/java-1.8.0
export MRUI_ROOT=/home/helene/work/jmrui
export LIB_DIR=/usr/lib64
#
#---- global variables ----
export DEBUG= -g -O -fPIC -m64
export CXXFLAGS = $(DEBUG) -ansi
export CFLAGS = $(DEBUG) -ansi 
#-D_REENTRANT
# export FFLAGS = $(DEBUG) -fugly -complex -fno -f90 -D_REENTRANT
export FFLAGS = $(DEBUG) -fno-underscoring 
#-D_REENTRANT 
export INCLUDE=-I. -I$(JDK_ROOT)/include/$(OS)  -I$(JDK_ROOT)/include
export LIBCFLAGS = -lfftw3
export LDFLAGS = -shared 
export LDLIBS = -L$(LIB_DIR) 


# WARNING!!! The following line should NOT be used to compile a library
# using Fortran code
export LIB_LDLIBS = -llapack -lblas /usr/lib/libf2c.a -lm -lc -ldfftw

#---- Directories used by the MRUI:
#  QUANTITATION_DIR = mrui/quantitation
#  PREPRO_DIR = mrui/preprocessing
#  GABOR_DIR = mrui/modeGabor
#  UTILS_DIR = mrui/utils
#  MRSI_DIR = mrui/mrsi
#  CONVERSION_DIR = mrui/conversion
#  GRAPH_DIR = mrui/graph
#  DESIGN_DIR = mrui/design
#  HISTO_DIR = mrui/history
#  SIMU_DIR = mrui/simulation
#  QUANTI_DIR = mrui/quantitation
#  MODE1D_DIR = mrui/mode1dTS
#  NMR2D_DIR = mrui/nmr2d

export QUANTITATION_DIR = cquest/quantitation
export PREPRO_DIR = cquest/preprocessing
export UTILS_DIR = cquest/utils
export GABOR_DIR = cquest/modeGabor
export HSVD2D_DIR = cquest/nmr2d/hsvd2d
export NMR2D_DIR = cquest/nmr2d
export FFT_DIR = fft
export BCH_DIR = cquest/simBch
export SIMU_DIR = cquest/simulation

export MAKEFILENAME = make -f Makefile.$(OS)