/* @include embcons *********************************************************** ** ** General routines for consensus. ** ** @author Copyright (c) Copyright 2001 (C) Tim Carver (tcarver@hgmp.mrc.ac.uk) ** @version $Revision: 1.7 $ ** @modified $Date: 2011/10/18 14:24:24 $ by $Author: rice $ ** @@ ** ** This library is free software; you can redistribute it and/or ** modify it under the terms of the GNU Lesser General Public ** License as published by the Free Software Foundation; either ** version 2.1 of the License, or (at your option) any later version. ** ** This library is distributed in the hope that it will be useful, ** but WITHOUT ANY WARRANTY; without even the implied warranty of ** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU ** Lesser General Public License for more details. ** ** You should have received a copy of the GNU Lesser General Public ** License along with this library; if not, write to the Free Software ** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, ** MA 02110-1301, USA. ** ******************************************************************************/ #ifndef EMBCONS_H #define EMBCONS_H /* ========================================================================= */ /* ============================= include files ============================= */ /* ========================================================================= */ #include "ajdefine.h" #include "ajstr.h" #include "ajseqdata.h" #include "ajmatrices.h" AJ_BEGIN_DECLS /* ========================================================================= */ /* =============================== constants =============================== */ /* ========================================================================= */ /* ========================================================================= */ /* ============================== public data ============================== */ /* ========================================================================= */ /* ========================================================================= */ /* =========================== public functions ============================ */ /* ========================================================================= */ /* ** Prototype definitions */ void embConsCalc (const AjPSeqset seqset, const AjPMatrix cmpmatrix, ajint nseqs, ajint mlen,float fplural, float setcase, ajint identity, AjBool gaps, AjPStr *cons); /* ** End of prototype definitions */ AJ_END_DECLS #endif /* !EMBCONS_H */