/* @include ensprojectionsegment ********************************************** ** ** Ensembl Projection Segment functions ** ** @author Copyright (C) 1999 Ensembl Developers ** @author Copyright (C) 2006 Michael K. Schuster ** @version $Revision: 1.9 $ ** @modified 2009 by Alan Bleasby for incorporation into EMBOSS core ** @modified $Date: 2012/02/04 10:30:24 $ by $Author: mks $ ** @@ ** ** This library is free software; you can redistribute it and/or ** modify it under the terms of the GNU Lesser General Public ** License as published by the Free Software Foundation; either ** version 2.1 of the License, or (at your option) any later version. ** ** This library is distributed in the hope that it will be useful, ** but WITHOUT ANY WARRANTY; without even the implied warranty of ** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU ** Lesser General Public License for more details. ** ** You should have received a copy of the GNU Lesser General Public ** License along with this library; if not, write to the Free Software ** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, ** MA 02110-1301, USA. ** ******************************************************************************/ #ifndef ENSPROJECTIONSEGMENT_H #define ENSPROJECTIONSEGMENT_H /* ========================================================================= */ /* ============================= include files ============================= */ /* ========================================================================= */ #include "ensslice.h" AJ_BEGIN_DECLS /* ========================================================================= */ /* =============================== constants =============================== */ /* ========================================================================= */ /* ========================================================================= */ /* ============================== public data ============================== */ /* ========================================================================= */ /* @data EnsPProjectionsegment ************************************************ ** ** Ensembl Projection Segment ** ** @alias EnsSProjectionsegment ** @alias EnsOProjectionsegment ** ** @attr SourceStart [ajuint] Source start coordinate ** @attr SourceEnd [ajuint] Source end coordinate ** @attr TargetSlice [EnsPSlice] Target Ensembl Slice ** @attr Use [ajuint] Use counter ** @attr Padding [ajuint] Padding to alignment boundary ** @@ ******************************************************************************/ typedef struct EnsSProjectionsegment { ajuint SourceStart; ajuint SourceEnd; EnsPSlice TargetSlice; ajuint Use; ajuint Padding; } EnsOProjectionsegment; #define EnsPProjectionsegment EnsOProjectionsegment* /* ========================================================================= */ /* =========================== public functions ============================ */ /* ========================================================================= */ /* ** Prototype definitions */ EnsPProjectionsegment ensProjectionsegmentNewCpy( const EnsPProjectionsegment ps); EnsPProjectionsegment ensProjectionsegmentNewIni(ajuint srcstart, ajuint srcend, EnsPSlice trgslice); EnsPProjectionsegment ensProjectionsegmentNewRef(EnsPProjectionsegment ps); void ensProjectionsegmentDel(EnsPProjectionsegment *Pps); ajuint ensProjectionsegmentGetSourceStart(const EnsPProjectionsegment ps); ajuint ensProjectionsegmentGetSourceEnd(const EnsPProjectionsegment ps); EnsPSlice ensProjectionsegmentGetTargetSlice(const EnsPProjectionsegment ps); AjBool ensProjectionsegmentTrace(const EnsPProjectionsegment ps, ajuint level); size_t ensProjectionsegmentCalculateMemsize(const EnsPProjectionsegment ps); /* ** End of prototype definitions */ AJ_END_DECLS #endif /* !ENSPROJECTIONSEGMENT_H */