.. raw:: html .. toctree:: :hidden: contents MView ===== **MView** reformats the results of a sequence database search (BLAST, FASTA, etc) or a multiple alignment (CLUSTAL, MSF, MAF, etc) adding optional HTML markup to control colouring and web page layout. It can also be used as a filter to extract and convert searches or alignments to common formats. .. mview -in pearson -html head -css on -colormap clustal -coloring .. consensus -threshold 90 -consensus on -con_threshold 90,80 -con_ignore .. class -con_coloring any data.dat .. raw:: html
1 [ . . . . : . . ] 80 1 EGFR 100.0% FKKIKVLGSGAFGTVYKGLWIPEGEK---------VKIPVAIKELREATSPK-ANKEILDEAYVMASVDNPHVCRLLGIC 2 DMDPR2 35.7% ISVNKQLGTGEFGIVQQGVWSNGNE-----------RIQVAIKCLCRERMQS-NPMEFLKEAAIMHSIEHENIVRLYGVV 3 ITK_HUMAN 32.9% LTFVQEIGSGQFGLVHLGYWLN--------------KDKVAIKTIREGAMS---EEDFIEEAEVMMKLSHPKLVQLYGVC 4 GCTK2ID 21.2% IREVKQIGVGQFGAVVLAEMTGLS-XLPKGSMNADGVALVAVKKLKPDVSD-EVLQSFDKEIKFMSQLQHDSIVQLLAIC 5 CEC55C3 31.5% VELTKKLGEGAFGEVWKGKLLKILDA-------NHQPVLVAVKTAKLESMTKEQIKEIMREARLMRNLDHINVVKFFGVA consensus/90% .......G.G.FG.V........................VA.K.................E...M............... consensus/80% ....K..G.G.FG.V..G.....................VA.K.................EA..M....H...V.L.G..MView is implemented in Perl as a self-contained command line program that should run cross-platform. Documentation ^^^^^^^^^^^^^ Main topics: * `Manual