Package: AnnotationHub Type: Package Title: Client to access AnnotationHub resources Version: 2.2.5 Authors@R: c(person("Martin", "Morgan", email="mtmorgan@fhcrc.org", role="cre"), person("Marc", "Carlson", role="ctb"), person("Dan", "Tenenbaum", role="ctb"), person("Sonali", "Arora", role="ctb")) biocViews: Infrastructure, DataImport, GUI, ThirdPartyClient Maintainer: Bioconductor Package Maintainer Description: This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access. License: Artistic-2.0 Depends: BiocGenerics (>= 0.15.10) Imports: utils, methods, RSQLite, BiocInstaller, AnnotationDbi (>= 1.31.19), S4Vectors, interactiveDisplayBase, httr Suggests: IRanges, GenomicRanges, GenomeInfoDb, VariantAnnotation, Rsamtools, rtracklayer, BiocStyle, knitr, AnnotationForge, rBiopaxParser, RUnit, GenomicFeatures, MSnbase, mzR, Biostrings, SummarizedExperiment Enhances: AnnotationHubData Collate: AnnotationHub-class.R AnnotationHubResource-class.R AnnotationHubBEDResource-class.R AnnotationHubProteomicsResource-class.R AnnotationHubEpigenomeResource-class.R utilities.R option.R sql.R hub.R cache.R display.R zzz.R VignetteBuilder: knitr NeedsCompilation: yes Packaged: 2016-03-11 04:46:47 UTC; biocbuild Author: Martin Morgan [cre], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb] Built: R 3.2.3; ; 2016-10-26 18:00:05 UTC; unix