Package: BSgenome.Ptroglodytes.UCSC.panTro3.masked
Title: Full masked genome sequences for Pan troglodytes (UCSC version
        panTro3)
Description: Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro3, Oct. 2010) and stored in Biostrings objects. The sequences are the same as in BSgenome.Ptroglodytes.UCSC.panTro3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
Version: 1.3.99
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
 <maintainer@bioconductor.org>
Depends: BSgenome (>= 1.31.8), BSgenome.Ptroglodytes.UCSC.panTro3
Imports: BSgenome, BSgenome.Ptroglodytes.UCSC.panTro3
License: Artistic-2.0
organism: Pan troglodytes
species: Chimp
provider: UCSC
provider_version: panTro3
release_date: Oct. 2010
release_name: CGSC Build 2.1.3
source_url: http://hgdownload.cse.ucsc.edu/goldenPath/panTro3/bigZips/
biocViews: AnnotationData, Genetics, BSgenome, Pan_troglodytes
Packaged: 2014-01-08 20:14:02 UTC; hpages
Built: R 3.2.3; ; 2016-10-26 19:42:10 UTC; unix