Package: BSgenome.Sscrofa.UCSC.susScr3.masked
Title: Full masked genome sequences for Sus scrofa (UCSC version
        susScr3)
Description: Full genome sequences for Sus scrofa (Pig) as provided by UCSC (susScr3, Aug. 2011) and stored in Biostrings objects. The sequences are the same as in BSgenome.Sscrofa.UCSC.susScr3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
Version: 1.3.99
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
 <maintainer@bioconductor.org>
Depends: BSgenome (>= 1.31.11), BSgenome.Sscrofa.UCSC.susScr3
Imports: BSgenome, BSgenome.Sscrofa.UCSC.susScr3
License: Artistic-2.0
organism: Sus scrofa
species: Pig
provider: UCSC
provider_version: susScr3
release_date: Aug. 2011
release_name: Swine Genome Sequencing Consortium Sscrofa10.2
source_url: http://hgdownload.cse.ucsc.edu/goldenPath/susScr3/bigZips/
biocViews: AnnotationData, Genetics, BSgenome, Sus_scrofa
Packaged: 2014-02-10 23:10:01 UTC; hpages
Built: R 3.2.3; ; 2016-10-26 19:51:23 UTC; unix