BiodiversityR-package |
GUI for biodiversity, suitability and community ecology analysis |
accumcomp |
Alternative Species Accumulation Curve Results |
accumplot |
Alternative Species Accumulation Curve Results |
accumresult |
Alternative Species Accumulation Curve Results |
add.spec.scores |
Add Species Scores to Unconstrained Ordination Results |
balanced.specaccum |
Balanced Species Accumulation Curves |
BCI.env |
Barro Colorado Island Quadrat Descriptions |
BiodiversityR |
GUI for biodiversity, suitability and community ecology analysis |
BiodiversityRGUI |
GUI for Biodiversity Analysis and Ordination |
CAPdiscrim |
Canonical Analysis of Principal Coordinates based on Discriminant Analysis |
caprescale |
Rescaling of Capscale Results to Reflect Total Sums of Squares Of Distance Matrix |
check.datasets |
Synchronize Community and Environmental Datasets |
check.ordiscores |
Synchronize Community and Environmental Datasets |
crosstabanalysis |
Presence-absence Analysis by Cross Tabulation |
deviancepercentage |
Calculate Percentage and Significance of Deviance Explained by a GLM |
dist.eval |
Distance Matrix Evaluation |
dist.zeroes |
Distance Matrix Transformation |
distdisplayed |
Compare Distance Displayed in Ordination Diagram with Distances of Distance Matrix |
disttransform |
Community Matrix Transformation |
diversitycomp |
Alternative Diversity Results |
diversityresult |
Alternative Diversity Results |
diversityvariables |
Alternative Diversity Results |
ensemble.accepted.categories |
Suitability mapping based on ensembles of modelling algorithms: handling of categorical data |
ensemble.analogue |
Climate analogues from climatic distance raster layers. |
ensemble.analogue.object |
Climate analogues from climatic distance raster layers. |
ensemble.area |
Suitability mapping based on ensembles of modelling algorithms: consensus mapping |
ensemble.batch |
Suitability mapping based on ensembles of modelling algorithms: batch processing |
ensemble.centroids |
Mapping of environmental zones based on the Mahalanobis distance from centroids in environmental space. |
ensemble.drop1 |
Suitability mapping based on ensembles of modelling algorithms: comparison of different algorithms and calibration |
ensemble.dummy.variables |
Suitability mapping based on ensembles of modelling algorithms: handling of categorical data |
ensemble.ecocrop |
Mapping of novel environmental conditions (areas where some of the environmental conditions are outside the range of environmental conditions of a reference area). |
ensemble.ecocrop.object |
Mapping of novel environmental conditions (areas where some of the environmental conditions are outside the range of environmental conditions of a reference area). |
ensemble.formulae |
Suitability mapping based on ensembles of modelling algorithms: comparison of different algorithms and calibration |
ensemble.habitat.change |
Suitability mapping based on ensembles of modelling algorithms: consensus mapping |
ensemble.mean |
Suitability mapping based on ensembles of modelling algorithms: batch processing |
ensemble.novel |
Mapping of novel environmental conditions (areas where some of the environmental conditions are outside the range of environmental conditions of a reference area). |
ensemble.novel.object |
Mapping of novel environmental conditions (areas where some of the environmental conditions are outside the range of environmental conditions of a reference area). |
ensemble.plot |
Suitability mapping based on ensembles of modelling algorithms: batch processing |
ensemble.raster |
Suitability mapping based on ensembles of modelling algorithms: consensus mapping |
ensemble.simplified.categories |
Suitability mapping based on ensembles of modelling algorithms: handling of categorical data |
ensemble.strategy |
Suitability mapping based on ensembles of modelling algorithms: comparison of different algorithms and calibration |
ensemble.test |
Suitability mapping based on ensembles of modelling algorithms: comparison of different algorithms and calibration |
ensemble.test.gbm |
Suitability mapping based on ensembles of modelling algorithms: comparison of different algorithms and calibration |
ensemble.test.nnet |
Suitability mapping based on ensembles of modelling algorithms: comparison of different algorithms and calibration |
ensemble.test.splits |
Suitability mapping based on ensembles of modelling algorithms: comparison of different algorithms and calibration |
ensemble.threshold |
Suitability mapping based on ensembles of modelling algorithms: comparison of different algorithms and calibration |
ensemble.weights |
Suitability mapping based on ensembles of modelling algorithms: comparison of different algorithms and calibration |
ensemble.zones |
Mapping of environmental zones based on the Mahalanobis distance from centroids in environmental space. |
evaluation.strip.data |
Evaluation strips for ensemble suitability mapping |
evaluation.strip.plot |
Evaluation strips for ensemble suitability mapping |
faramea |
Faramea occidentalis abundance in Panama |
ifri |
Example data from the International Forestry Resources and Institutions (IFRI) research network |
importancevalue |
Importance Value |
importancevalue.comp |
Importance Value |
loaded.citations |
Give Citation Information for all Loaded Packages |
makecommunitydataset |
Make a Community Dataset from a Stacked Dataset |
multiconstrained |
Pairwise Comparisons for All Levels of a Categorical Variable by RDA, CCA or Capscale |
nested.anova.dbrda |
Nested Analysis of Variance via Distance-based Redundancy Analysis or Non-parametric Multivariate Analysis of Variance |
nested.npmanova |
Nested Analysis of Variance via Distance-based Redundancy Analysis or Non-parametric Multivariate Analysis of Variance |
NMSrandom |
Calculate the NMS Result with the Smallest Stress from Various Random Starts |
nnetrandom |
Calculate the NNET Result with the Smallest Value from Various Random Starts |
ordibubble |
Add Other Graphical Items to Ordination Diagrams |
ordicluster2 |
Add Other Graphical Items to Ordination Diagrams |
ordicoeno |
Coenoclines for an Ordination Axis |
ordiequilibriumcircle |
PCA Significance |
ordinearest |
Add Other Graphical Items to Ordination Diagrams |
ordisymbol |
Add Other Graphical Items to Ordination Diagrams |
ordivector |
Add Other Graphical Items to Ordination Diagrams |
PCAsignificance |
PCA Significance |
prepare.bioenv |
Distance Matrix Evaluation |
radfitresult |
Alternative Rank Abundance Fitting Results |
rankabuncomp |
Rank Abundance Curves |
rankabundance |
Rank Abundance Curves |
rankabunplot |
Rank Abundance Curves |
removeNAcomm |
Synchronize Community and Environmental Datasets |
removeNAenv |
Synchronize Community and Environmental Datasets |
removezerospecies |
Synchronize Community and Environmental Datasets |
renyiaccumresult |
Alternative Renyi Diversity Results |
renyicomp |
Alternative Renyi Diversity Results |
renyiplot |
Alternative Renyi Diversity Results |
renyiresult |
Alternative Renyi Diversity Results |
replaceNAcomm |
Synchronize Community and Environmental Datasets |
residualssurface |
Show and Interpolate Two Dimensional Distribution of Residuals |
same.sites |
Synchronize Community and Environmental Datasets |
spatialsample |
Spatial Sampling within a Polygon |
subsetcomm |
Synchronize Community and Environmental Datasets |
transfgradient |
Gradient for Hypothetical Example of Turover of Species Composition |
transfspecies |
Hypothetical Example of Turover of Species Composition |
warcom |
Warburgia ugandensis AFLP Scores |
warenv |
Warburgia ugandensis Population Structure |