CGHbase: Base functions and classes for arrayCGH data analysis.
Cervical cancer arrayCGH data
Cervical cancer arrayCGH data called with CGHcall
Normalized log2 ratios from cervical cancer arrayCGH data.
Raw log2 ratios from cervical cancer arrayCGH data.
Regions of cervical cancer arrayCGH data as defined by CGHregions
Segmented log2 ratios from cervical cancer arrayCGH data.
Retrieve regions information from cghRegions object.
Retrieve feature position data from cgh objects.
Class to contain and describe called array comparative genomic hybridization data.
Class to contain and describe raw or normalized array comparative genomic hybridization data.
Class to contain and describe array comparative genomic hybridization regions data.
Class to contain and describe segmented array comparative genomic hybridization data.
Retrieve copynumber data from cgh objects.
Visualization of aCGH regions.
Visualization of aCGH profiles.
Convert a dataframe or textfile to an object of class cghRaw.
Plot aCGH data.
Retrieve call probabilities from a cghCall object.
Retrieve regions data from cghRegions object.
Visualization of aCGH profiles.