DEXSeq                  Performs the differential exon usage test in a
                        single command
DEXSeq-defunct          This functions are deprecated and will become
                        defunct.
DEXSeqDataSet-class     DEXSeqDataSet object and constructors
DEXSeqHTML              DEXSeq HTML report writer
DEXSeqResults-class     DEXSeqResults object
[,DEXSeqDataSet-method
                        Subset and replacements of DEXSeqDataSet slots
counts                  Accessors for the 'counts' slot of a
                        DEXSeqResults object.
estimateDispersions     Estimate the dispersions for a DEXSeqDataSet
estimateExonFoldChanges
                        Estimates exon usage coefficients from the
                        fitted terms of the GLM.
estimateSizeFactors     Estimate the size factors for a DEXSeqDataSet
featureCounts           Accessor functions for DEXSeqDataSet details
findOverlaps            Methods from GRanges overlaps for the DEXSeq
                        object
perGeneQValue           Summarize per-exon p-values into per-gene
                        q-values.
plotDEXSeq              Visualization of the per gene DEXSeq results.
plotDispEsts            Plot dispersion estimates
plotMA-methods          Generate an MA plot
testForDEU              Test for Differential Exon Usage.