DNA copy number data analysis

Documentation for package ‘DNAcopy’ version 1.44.0

CNA	Create 'Copy Number Array' data object
coriell	Array CGH data set of Coriell cell lines
cytoBand	Cytogenic band data
default.DNAcopy.bdry	Sequential stopping boundary
DNAcopy	Results of segmenting a CNA data object
exon.segment	Binary segmentation of exon data.
getbdry	Sequential stopping boundary
glFrequency	Additional summary measured for the segments
plot.DNAcopy	Plot the data and results from segment of a CNA object
plotSample	Plot the data and results from segmentation for a single sample
print.CNA	Create 'Copy Number Array' data object
print.DNAcopy	Results of segmenting a CNA data object
segment	Genome Segmentation Program
segments.p	p-values for the change-points
segments.summary	Additional summary measured for the segments
smooth.CNA	Smooth a 'Copy Number Array' data object
subset.CNA	Subset a 'Copy Number Array' data object
subset.DNAcopy	Subset a DNAcopy data object
zoomIntoRegion	Zoomed in view of genomic region