DNA copy number data analysis


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Documentation for package ‘DNAcopy’ version 1.44.0

Help Pages

CNA Create 'Copy Number Array' data object
coriell Array CGH data set of Coriell cell lines
cytoBand Cytogenic band data
default.DNAcopy.bdry Sequential stopping boundary
DNAcopy Results of segmenting a CNA data object
exon.segment Binary segmentation of exon data.
getbdry Sequential stopping boundary
glFrequency Additional summary measured for the segments
plot.DNAcopy Plot the data and results from segment of a CNA object
plotSample Plot the data and results from segmentation for a single sample
print.CNA Create 'Copy Number Array' data object
print.DNAcopy Results of segmenting a CNA data object
segment Genome Segmentation Program
segments.p p-values for the change-points
segments.summary Additional summary measured for the segments
smooth.CNA Smooth a 'Copy Number Array' data object
subset.CNA Subset a 'Copy Number Array' data object
subset.DNAcopy Subset a DNAcopy data object
zoomIntoRegion Zoomed in view of genomic region