Illumina Golden Gate Human Methylation Cancer Panel Version 1 annotation data (chip GGHumanMethCancerPanelv1)


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Documentation for package ‘GGHumanMethCancerPanelv1.db’ version 1.4.1

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GGHumanMethCancerPanelv1 Bioconductor annotation data package
GGHumanMethCancerPanelv1.db Bioconductor annotation data package
GGHumanMethCancerPanelv1ACCNUM Map Manufacturer identifiers to Accession Numbers
GGHumanMethCancerPanelv1ALIAS2PROBE Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
GGHumanMethCancerPanelv1CHR Map Manufacturer IDs to Chromosomes
GGHumanMethCancerPanelv1CHRLENGTHS A named vector for the length of each of the chromosomes
GGHumanMethCancerPanelv1CHRLOC Map Manufacturer IDs to Chromosomal Location
GGHumanMethCancerPanelv1CHRLOCEND Map Manufacturer IDs to Chromosomal Location
GGHumanMethCancerPanelv1CPGCOORDINATE Map Manufacturer IDs to genomic coordinate
GGHumanMethCancerPanelv1DISTTOTSS Map Manufacturer IDs to the distance to the transcript start of the nearest gene
GGHumanMethCancerPanelv1ENSEMBL Map Ensembl gene accession numbers with Entrez Gene identifiers
GGHumanMethCancerPanelv1ENSEMBL2PROBE Map Ensembl gene accession numbers with Entrez Gene identifiers
GGHumanMethCancerPanelv1ENTREZID Map between Manufacturer Identifiers and Entrez Gene
GGHumanMethCancerPanelv1ENZYME Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
GGHumanMethCancerPanelv1ENZYME2PROBE Map between Enzyme Commission Numbers and Manufacturer Identifiers
GGHumanMethCancerPanelv1GENENAME Map between Manufacturer IDs and Genes
GGHumanMethCancerPanelv1GO Map between Manufacturer IDs and Gene Ontology (GO)
GGHumanMethCancerPanelv1GO2ALLPROBES Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
GGHumanMethCancerPanelv1GO2PROBE Map between Gene Ontology (GO) and Manufacturer Identifiers
GGHumanMethCancerPanelv1ISCPGISLAND Determine whether a probe is within a CpG island
GGHumanMethCancerPanelv1LOCUSID Map between Manufacturer Identifiers and Entrez Gene
GGHumanMethCancerPanelv1MAP Map between Manufacturer Identifiers and cytogenetic maps/bands
GGHumanMethCancerPanelv1MAPCOUNTS Number of mapped keys for the maps in package GGHumanMethCancerPanelv1.db
GGHumanMethCancerPanelv1OMIM Map between Manufacturer Identifiers and Mendelian Inheritance in Man (MIM) identifiers
GGHumanMethCancerPanelv1ORGANISM The Organism information for GGHumanMethCancerPanelv1
GGHumanMethCancerPanelv1ORGPKG The Organism information for GGHumanMethCancerPanelv1
GGHumanMethCancerPanelv1PATH Mappings between probe identifiers and KEGG pathway identifiers
GGHumanMethCancerPanelv1PATH2PROBE Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
GGHumanMethCancerPanelv1PFAM Map Manufacturer IDs to Pfam IDs
GGHumanMethCancerPanelv1PMID Map between Manufacturer Identifiers and PubMed Identifiers
GGHumanMethCancerPanelv1PMID2PROBE Map between PubMed Identifiers and Manufacturer Identifiers
GGHumanMethCancerPanelv1PROSITE Map Manufacturer IDs to PROSITE ID
GGHumanMethCancerPanelv1REFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
GGHumanMethCancerPanelv1SYMBOL Map between Manufacturer Identifiers and Gene Symbols
GGHumanMethCancerPanelv1UNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers
GGHumanMethCancerPanelv1UNIPROT Map Uniprot accession numbers with Entrez Gene identifiers
GGHumanMethCancerPanelv1UNIPROT2PROBE Map Uniprot accession numbers with Entrez Gene identifiers
GGHumanMethCancerPanelv1_dbconn Collect information about the package annotation DB
GGHumanMethCancerPanelv1_dbfile Collect information about the package annotation DB
GGHumanMethCancerPanelv1_dbInfo Collect information about the package annotation DB
GGHumanMethCancerPanelv1_dbschema Collect information about the package annotation DB