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| GOstats-package | Tools for manipulating GO and microarrays. |
| Bdists | Distance matrices for the BCR/ABL and NEG subgroups. |
| combGOGraph | Defunct Functions in GOstats Package |
| compCorrGraph | A function to compute a correlation based graph from Gene Expression Data |
| compGdist | A function to compute the distance between pairs of nodes in a graph. |
| conditional-method | Class "GOHyperGResult" |
| enumPairs | Triad Functions |
| expectedCounts-method | Class "GOHyperGResult" |
| geneCounts-method | Class "GOHyperGResult" |
| geneIdUniverse-method | Class "GOHyperGResult" |
| getGoGraph | Defunct Functions in GOstats Package |
| goDag | Class "GOHyperGResult" |
| goDag-method | Class "GOHyperGResult" |
| GOGraph | Construct the GO graph given a set of leaves. |
| GOHyperG | Defunct Functions in GOstats Package |
| GOHyperGResult-class | Class "GOHyperGResult" |
| GOKEGGHyperG | Defunct Functions in GOstats Package |
| GOLeaves | Defunct Functions in GOstats Package |
| GOstats | Tools for manipulating GO and microarrays. |
| GOstats-defunct | Defunct Functions in GOstats Package |
| htmlReport-method | Class "GOHyperGResult" |
| hyperG2Affy | Defunct Functions in GOstats Package |
| hyperGtable | Defunct Functions in GOstats Package |
| hyperGTest | Hypergeometric Tests for GO term association |
| hyperGTest-method | Hypergeometric Tests for GO term association |
| idx2dimnames | Index to Dimnames |
| inducedTermGraph | Extraction and Plotting of GO Terms from a GOHyperGResult Object |
| isTriad | Triad Functions |
| makeGOGraph | Construct a GO Graph |
| Ndists | Distance matrices for the BCR/ABL and NEG subgroups. |
| notConn | Find genes that are not connected to the others. |
| oddsRatios-method | Class "GOHyperGResult" |
| oneGOGraph | Construct the GO graph given a set of leaves. |
| plotGOTermGraph | Extraction and Plotting of GO Terms from a GOHyperGResult Object |
| probeSetSummary | Summarize Probe Sets Associated with a hyperGTest Result |
| pvalues-method | Class "GOHyperGResult" |
| reduce2Degreek | Triad Functions |
| selectedGenes | Defunct Functions in GOstats Package |
| shortestPath | Shortest Path Analysis |
| simLL | Functions to compute similarities between GO graphs and also between Entrez Gene IDs based on their induced GO graphs. |
| simLP | Functions to compute similarities between GO graphs and also between Entrez Gene IDs based on their induced GO graphs. |
| simUI | Functions to compute similarities between GO graphs and also between Entrez Gene IDs based on their induced GO graphs. |
| summary-method | Class "GOHyperGResult" |
| termGraphs | Extraction and Plotting of GO Terms from a GOHyperGResult Object |
| triad | Triad Functions |
| triadCensus | Triad Functions |