Tools for manipulating GO and microarrays.


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Documentation for package ‘GOstats’ version 2.36.0

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GOstats-package Tools for manipulating GO and microarrays.
Bdists Distance matrices for the BCR/ABL and NEG subgroups.
combGOGraph Defunct Functions in GOstats Package
compCorrGraph A function to compute a correlation based graph from Gene Expression Data
compGdist A function to compute the distance between pairs of nodes in a graph.
conditional-method Class "GOHyperGResult"
enumPairs Triad Functions
expectedCounts-method Class "GOHyperGResult"
geneCounts-method Class "GOHyperGResult"
geneIdUniverse-method Class "GOHyperGResult"
getGoGraph Defunct Functions in GOstats Package
goDag Class "GOHyperGResult"
goDag-method Class "GOHyperGResult"
GOGraph Construct the GO graph given a set of leaves.
GOHyperG Defunct Functions in GOstats Package
GOHyperGResult-class Class "GOHyperGResult"
GOKEGGHyperG Defunct Functions in GOstats Package
GOLeaves Defunct Functions in GOstats Package
GOstats Tools for manipulating GO and microarrays.
GOstats-defunct Defunct Functions in GOstats Package
htmlReport-method Class "GOHyperGResult"
hyperG2Affy Defunct Functions in GOstats Package
hyperGtable Defunct Functions in GOstats Package
hyperGTest Hypergeometric Tests for GO term association
hyperGTest-method Hypergeometric Tests for GO term association
idx2dimnames Index to Dimnames
inducedTermGraph Extraction and Plotting of GO Terms from a GOHyperGResult Object
isTriad Triad Functions
makeGOGraph Construct a GO Graph
Ndists Distance matrices for the BCR/ABL and NEG subgroups.
notConn Find genes that are not connected to the others.
oddsRatios-method Class "GOHyperGResult"
oneGOGraph Construct the GO graph given a set of leaves.
plotGOTermGraph Extraction and Plotting of GO Terms from a GOHyperGResult Object
probeSetSummary Summarize Probe Sets Associated with a hyperGTest Result
pvalues-method Class "GOHyperGResult"
reduce2Degreek Triad Functions
selectedGenes Defunct Functions in GOstats Package
shortestPath Shortest Path Analysis
simLL Functions to compute similarities between GO graphs and also between Entrez Gene IDs based on their induced GO graphs.
simLP Functions to compute similarities between GO graphs and also between Entrez Gene IDs based on their induced GO graphs.
simUI Functions to compute similarities between GO graphs and also between Entrez Gene IDs based on their induced GO graphs.
summary-method Class "GOHyperGResult"
termGraphs Extraction and Plotting of GO Terms from a GOHyperGResult Object
triad Triad Functions
triadCensus Triad Functions