Class "BaseTrack" represents base specific data
Class "DisplayPars" is used to specify graphical parameters to gdObjects.
DisplayPars constructs objects of type DisplayPars which are used to effect the display of gdObjects
Class "ExonArray" representing probe level exon array data from Affymetrix
Class "Gene" represents the Ensembl Gene level annotation
Class "GeneModel", represents a custom gene model
Class "GeneRegion", representing gene structures in a defined genomic region
Class "GenericArray", representing array data
Class "GenomeAxis", representing a genomic coordinate axis
Class "HighlightRegion" is used to highlight vertical blocks of genomic regions.
Class "Legend", represents a legend to add to a plot
Class "Segmentation" is used to specify segmentations to any class that extends Segmentable (GenericArray, BaseTrack)
Class "Title" representing the title of a plot
Represent known transcript isoforms as annoted by Ensembl
Class "TranscriptRegion", representing a genomic region with transcripts
Generic called on each gdObject to do the plotting.
This method does the drawing of a track overlay. One should implement this method to gain track plotting functionality.
Class "gdObject" is the parent class of all of the objects in the system.
gdPlot is the main plotting function of the GenomeGraphs package
Construct an AnnotationTrack object from biomaRt.
Retrieves the genomic range of an object
Retrieves a display parameter from an object.
Creates an object of class Gene containing the intron-exon structures of genes
Contains dummy expression array probe start positions
Contains dummy copy number segmentation end positions
Contains dummy copy number segmentation start positions data
This is an example data set from chromosome 4 of yeast from various publicly available datasets.
Print standard display options, DisplayPars for an object or a class
Contains probe start and end positions of exon array probes