Package: GenomeInfoDb Title: Utilities for manipulating chromosome and other 'seqname' identifiers Description: Contains data and functions that define and allow translation between different chromosome sequence naming conventions (e.g., "chr1" versus "1"), including a function that attempts to place sequence names in their natural, rather than lexicographic, order. Version: 1.6.3 Author: Sonali Arora, Martin Morgan, Marc Carlson, H. Pages Maintainer: Bioconductor Package Maintainer biocViews: Genetics, DataRepresentation, Annotation, GenomeAnnotation Depends: R (>= 3.1), methods, stats4, BiocGenerics (>= 0.13.8), S4Vectors (>= 0.7.11), IRanges (>= 1.99.26) Imports: methods, BiocGenerics, S4Vectors Suggests: GenomicRanges, Rsamtools, GenomicAlignments, BSgenome, GenomicFeatures, BSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Celegans.UCSC.ce2, BSgenome.Hsapiens.NCBI.GRCh38, TxDb.Dmelanogaster.UCSC.dm3.ensGene, RUnit, BiocStyle, knitr License: Artistic-2.0 Collate: utils.R rankSeqlevels.R assembly-utils.R taxIDSpeciesLookup.R fetchExtendedChromInfoFromUCSC.R fetchSequenceInfo.R seqinfo.R seqlevelsStyle.R seqlevels-wrappers.R Seqinfo-class.R GenomeDescription-class.R test_GenomeInfoDb_package.R VignetteBuilder: knitr Video: http://youtu.be/wdEjCYSXa7w NeedsCompilation: no Packaged: 2016-01-26 04:05:50 UTC; biocbuild Built: R 3.2.3; ; 2016-10-26 17:39:05 UTC; unix