GAGO Gene set testing of gene set databases using GlobalAncova GlobalAncova Global test for differential gene expression GlobalAncova-methods Methods for Function GlobalAncova GlobalAncova.closed Closed testing procedure for testing several groups of genes using GlobalAncova GlobalAncova.closed-methods Methods for Function GlobalAncova.closed GlobalAncova.decomp GlobalAncova with sequential and type III sum of squares decomposition and adjustment for global covariates Plot.all Combined visualization of sequential decomposition and influence of single genes on the GlobalAncova statistic Plot.genes Genes Plot for Global Ancova Plot.genes-methods Methods for Function Plot.genes Plot.sequential Visualization of sequential decomposition Plot.subjects Subjects Plot for GlobalAncova Plot.subjects-methods Methods for Function Plot.subjects colon.normal Gene expression data colon.pheno Covariate information for the colon data colon.tumour Gene expression data pair.compare Pairwise comparisons of factor levels within GlobalAncova pathways Cancer related pathways phenodata Covariate information for the van t'Veer data vantVeer Gene expression data