Calculates a global test for differential gene expression between groups

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Documentation for package ‘GlobalAncova’ version 3.38.0

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colon.normal Gene expression data
colon.pheno Covariate information for the colon data
colon.tumour Gene expression data
GABroad Gene set testing of gene set databases using GlobalAncova
GAGO Gene set testing of gene set databases using GlobalAncova
GAKEGG Gene set testing of gene set databases using GlobalAncova
GlobalAncova Global test for differential gene expression
GlobalAncova-method Global test for differential gene expression
GlobalAncova-methods Methods for Function GlobalAncova
GlobalAncova.closed Closed testing procedure for testing several groups of genes using GlobalAncova
GlobalAncova.closed-method Closed testing procedure for testing several groups of genes using GlobalAncova
GlobalAncova.closed-methods Methods for Function GlobalAncova.closed
GlobalAncova.decomp GlobalAncova with sequential and type III sum of squares decomposition and adjustment for global covariates
pair.compare Pairwise comparisons of factor levels within GlobalAncova
pathways Cancer related pathways
phenodata Covariate information for the van t'Veer data
Plot.all Combined visualization of sequential decomposition and influence of single genes on the GlobalAncova statistic
Plot.genes Genes Plot for Global Ancova
Plot.genes-method Genes Plot for Global Ancova
Plot.genes-methods Methods for Function Plot.genes
Plot.sequential Visualization of sequential decomposition
Plot.subjects Subjects Plot for GlobalAncova
Plot.subjects-method Subjects Plot for GlobalAncova
Plot.subjects-methods Methods for Function Plot.subjects
vantVeer Gene expression data