A B C D E F G H I L M N O P Q R S T U V W misc
active | MaskCollection objects |
active-method | MaskCollection objects |
active<- | MaskCollection objects |
active<--method | MaskCollection objects |
all-method | Lists of Atomic Vectors in Natural and Rle Form |
append-method | MaskCollection objects |
applyFun | Applying over spaces |
applyFun-method | Applying over spaces |
applyFun<- | Applying over spaces |
applyFun<--method | Applying over spaces |
applyParams | Applying over spaces |
applyParams-method | Applying over spaces |
applyParams<- | Applying over spaces |
applyParams<--method | Applying over spaces |
as.data.frame-method | GappedRanges objects |
as.data.frame-method | Examples of basic manipulation of Hits objects |
as.data.frame-method | Data on ranges |
as.data.frame-method | Ranges objects |
as.data.frame.GappedRanges | GappedRanges objects |
as.data.frame.Hits | Examples of basic manipulation of Hits objects |
as.data.frame.RangedData | Data on ranges |
as.data.frame.Ranges | Ranges objects |
as.env-method | List of DataFrames |
as.env-method | Data on ranges |
as.integer-method | Ranges objects |
as.list-method | Lists of Atomic Vectors in Natural and Rle Form |
as.list-method | Examples of basic manipulation of Hits objects |
as.list-method | List of IRanges and NormalIRanges |
as.list-method | Vector objects (old man page) |
as.list.CompressedNormalIRangesList | List of IRanges and NormalIRanges |
as.list.Hits | Examples of basic manipulation of Hits objects |
as.list.Vector | Vector objects (old man page) |
as.matrix-method | List of Hits objects |
as.matrix-method | Ranges objects |
as.matrix-method | Views objects |
as.matrix-method | List of Views |
as.table-method | List of Hits objects |
as.vector-method | Lists of Atomic Vectors in Natural and Rle Form |
asNormalIRanges | IRanges utility functions |
AtomicList | Lists of Atomic Vectors in Natural and Rle Form |
AtomicList-class | Lists of Atomic Vectors in Natural and Rle Form |
breakInChunks | IRanges utility functions |
c-method | CompressedList objects |
c-method | GappedRanges objects |
c-method | IRanges and NormalIRanges objects |
c-method | Data on ranges |
c-method | Views objects |
cbind-method | List of DataFrames |
CharacterList | Lists of Atomic Vectors in Natural and Rle Form |
CharacterList-class | Lists of Atomic Vectors in Natural and Rle Form |
chartr-method | Lists of Atomic Vectors in Natural and Rle Form |
class:AtomicList | Lists of Atomic Vectors in Natural and Rle Form |
class:CharacterList | Lists of Atomic Vectors in Natural and Rle Form |
class:ComplexList | Lists of Atomic Vectors in Natural and Rle Form |
class:CompressedAtomicList | Lists of Atomic Vectors in Natural and Rle Form |
class:CompressedCharacterList | Lists of Atomic Vectors in Natural and Rle Form |
class:CompressedComplexList | Lists of Atomic Vectors in Natural and Rle Form |
class:CompressedFactorList | Lists of Atomic Vectors in Natural and Rle Form |
class:CompressedHitsList | List of Hits objects |
class:CompressedIntegerList | Lists of Atomic Vectors in Natural and Rle Form |
class:CompressedIRangesList | List of IRanges and NormalIRanges |
class:CompressedList | CompressedList objects |
class:CompressedLogicalList | Lists of Atomic Vectors in Natural and Rle Form |
class:CompressedNormalIRangesList | List of IRanges and NormalIRanges |
class:CompressedNumericList | Lists of Atomic Vectors in Natural and Rle Form |
class:CompressedRawList | Lists of Atomic Vectors in Natural and Rle Form |
class:CompressedRleList | Lists of Atomic Vectors in Natural and Rle Form |
class:Dups | Grouping objects |
class:FactorList | Lists of Atomic Vectors in Natural and Rle Form |
class:GappedRanges | GappedRanges objects |
class:Grouping | Grouping objects |
class:H2LGrouping | Grouping objects |
class:HitsList | List of Hits objects |
class:IntegerList | Lists of Atomic Vectors in Natural and Rle Form |
class:IRanges | IRanges and NormalIRanges objects |
class:IRangesList | List of IRanges and NormalIRanges |
class:LogicalList | Lists of Atomic Vectors in Natural and Rle Form |
class:ManyToOneGrouping | Grouping objects |
class:MaskCollection | MaskCollection objects |
class:NCList | Nested Containment List objects |
class:NCLists | Nested Containment List objects |
class:NormalIRanges | IRanges and NormalIRanges objects |
class:NormalIRangesList | List of IRanges and NormalIRanges |
class:NumericList | Lists of Atomic Vectors in Natural and Rle Form |
class:Partitioning | Grouping objects |
class:PartitioningByEnd | Grouping objects |
class:PartitioningByWidth | Grouping objects |
class:PartitioningMap | Grouping objects |
class:RangedData | Data on ranges |
class:Ranges | Ranges objects |
class:RangesList-class | List of Ranges |
class:RangesORmissing | Finding the nearest range neighbor |
class:RawList | Lists of Atomic Vectors in Natural and Rle Form |
class:RleList | Lists of Atomic Vectors in Natural and Rle Form |
class:RleViews | The RleViews class |
class:SimpleAtomicList | Lists of Atomic Vectors in Natural and Rle Form |
class:SimpleCharacterList | Lists of Atomic Vectors in Natural and Rle Form |
class:SimpleComplexList | Lists of Atomic Vectors in Natural and Rle Form |
class:SimpleFactorList | Lists of Atomic Vectors in Natural and Rle Form |
class:SimpleIntegerList | Lists of Atomic Vectors in Natural and Rle Form |
class:SimpleIRangesList | List of IRanges and NormalIRanges |
class:SimpleLogicalList | Lists of Atomic Vectors in Natural and Rle Form |
class:SimpleNormalIRangesList | List of IRanges and NormalIRanges |
class:SimpleNumericList | Lists of Atomic Vectors in Natural and Rle Form |
class:SimpleRangesList-class | List of Ranges |
class:SimpleRawList | Lists of Atomic Vectors in Natural and Rle Form |
class:SimpleRleList | Lists of Atomic Vectors in Natural and Rle Form |
class:SimpleViewsList | List of Views |
class:Views | Views objects |
class:ViewsList | List of Views |
classNameForDisplay-method | CompressedList objects |
coerce-method | Lists of Atomic Vectors in Natural and Rle Form |
coerce-method | CompressedList objects |
coerce-method | List of DataFrames |
coerce-method | GappedRanges objects |
coerce-method | Grouping objects |
coerce-method | Examples of basic manipulation of Hits objects |
coerce-method | IRanges and NormalIRanges objects |
coerce-method | IRanges utility functions |
coerce-method | Interval Search Forests |
coerce-method | Interval Search Trees |
coerce-method | MaskCollection objects |
coerce-method | Nested Containment List objects |
coerce-method | Data on ranges |
coerce-method | Selection of ranges and columns |
coerce-method | List of Ranges |
coerce-method | Rle objects (old man page) |
coerce-method | The RleViews class |
coerce-method | List of RleViews |
coerce-method | Views objects |
collapse | MaskCollection objects |
collapse-method | MaskCollection objects |
colnames-method | List of DataFrames |
colnames-method | Data on ranges |
colnames-method | Selection of ranges and columns |
colnames<--method | List of DataFrames |
colnames<--method | Data on ranges |
colnames<--method | Selection of ranges and columns |
columnMetadata | List of DataFrames |
columnMetadata-method | List of DataFrames |
columnMetadata-method | Data on ranges |
columnMetadata<- | List of DataFrames |
columnMetadata<--method | List of DataFrames |
columnMetadata<--method | Data on ranges |
compare | Comparing and ordering ranges |
compare-method | Comparing and ordering ranges |
Complex-method | Lists of Atomic Vectors in Natural and Rle Form |
ComplexList | Lists of Atomic Vectors in Natural and Rle Form |
ComplexList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedAtomicList | Lists of Atomic Vectors in Natural and Rle Form |
CompressedAtomicList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedCharacterList | Lists of Atomic Vectors in Natural and Rle Form |
CompressedCharacterList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedComplexList | Lists of Atomic Vectors in Natural and Rle Form |
CompressedComplexList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedFactorList | Lists of Atomic Vectors in Natural and Rle Form |
CompressedFactorList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedHitsList | List of Hits objects |
CompressedHitsList-class | List of Hits objects |
CompressedIntegerList | Lists of Atomic Vectors in Natural and Rle Form |
CompressedIntegerList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedIRangesList | List of IRanges and NormalIRanges |
CompressedIRangesList-class | List of IRanges and NormalIRanges |
CompressedList | CompressedList objects |
CompressedList-class | CompressedList objects |
CompressedLogicalList | Lists of Atomic Vectors in Natural and Rle Form |
CompressedLogicalList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedNormalIRangesList | List of IRanges and NormalIRanges |
CompressedNormalIRangesList-class | List of IRanges and NormalIRanges |
CompressedNumericList | Lists of Atomic Vectors in Natural and Rle Form |
CompressedNumericList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedRawList | Lists of Atomic Vectors in Natural and Rle Form |
CompressedRawList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedRleList | Lists of Atomic Vectors in Natural and Rle Form |
CompressedRleList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedSplitDataFrameList-class | List of DataFrames |
cor-method | Lists of Atomic Vectors in Natural and Rle Form |
countOverlaps | Finding overlapping ranges |
countOverlaps-method | Finding overlapping ranges |
cov-method | Lists of Atomic Vectors in Natural and Rle Form |
coverage | Coverage of a set of ranges |
coverage-method | Coverage of a set of ranges |
coverage-methods | Coverage of a set of ranges |
cummax-method | Lists of Atomic Vectors in Natural and Rle Form |
cummin-method | Lists of Atomic Vectors in Natural and Rle Form |
cumprod-method | Lists of Atomic Vectors in Natural and Rle Form |
cumsum-method | Lists of Atomic Vectors in Natural and Rle Form |
DataFrame-utils | Common operations on DataFrame objects |
DataFrameList | List of DataFrames |
DataFrameList-class | List of DataFrames |
desc | MaskCollection objects |
desc-method | MaskCollection objects |
desc<- | MaskCollection objects |
desc<--method | MaskCollection objects |
diff-method | Lists of Atomic Vectors in Natural and Rle Form |
dim-method | List of DataFrames |
dimnames-method | List of DataFrames |
dimnames<--method | List of DataFrames |
disjoin | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
disjoin-method | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
disjointBins | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
disjointBins-method | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
distance | Finding the nearest range neighbor |
distance-method | Finding the nearest range neighbor |
distanceToNearest | Finding the nearest range neighbor |
distanceToNearest-method | Finding the nearest range neighbor |
drop-method | Lists of Atomic Vectors in Natural and Rle Form |
duplicated-method | Lists of Atomic Vectors in Natural and Rle Form |
duplicated-method | Grouping objects |
duplicated.CompressedIntegerList | Lists of Atomic Vectors in Natural and Rle Form |
duplicated.CompressedList | Lists of Atomic Vectors in Natural and Rle Form |
duplicated.Dups | Grouping objects |
Dups | Grouping objects |
Dups-class | Grouping objects |
elementLengths-method | CompressedList objects |
elementLengths-method | GappedRanges objects |
elementLengths-method | Interval Search Forests |
elementLengths-method | Nested Containment List objects |
elementLengths-method | Data on ranges |
elementLengths-method | Ranges objects |
elementLengths-method | Views objects |
end-method | GappedRanges objects |
end-method | Grouping objects |
end-method | List of IRanges and NormalIRanges |
end-method | Interval Search Forests |
end-method | Interval Search Trees |
end-method | Nested Containment List objects |
end-method | Data on ranges |
end-method | Ranges objects |
end-method | List of Ranges |
end-method | Views objects |
end-method | List of Views |
end<- | Ranges objects |
end<--method | IRanges and NormalIRanges objects |
end<--method | Data on ranges |
end<--method | List of Ranges |
end<--method | Views objects |
endoapply-method | CompressedList objects |
endoapply-method | Data on ranges |
eval | Vector objects (old man page) |
eval-method | Vector objects (old man page) |
expand | The expand method for uncompressing compressed data columns |
expand-method | The expand method for uncompressing compressed data columns |
extractList | Group elements of a vector-like object into a list-like object |
extractList-method | Group elements of a vector-like object into a list-like object |
FactorList | Lists of Atomic Vectors in Natural and Rle Form |
FactorList-class | Lists of Atomic Vectors in Natural and Rle Form |
filterRules | Applying over spaces |
filterRules-method | Applying over spaces |
filterRules<- | Applying over spaces |
filterRules<--method | Applying over spaces |
findOverlaps | Finding overlapping ranges |
findOverlaps-method | Finding overlapping ranges |
findOverlaps-methods | Finding overlapping ranges |
findRange | Rle objects (old man page) |
findRange-method | Rle objects (old man page) |
flank | Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object |
flank-method | Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object |
follow | Finding the nearest range neighbor |
follow-method | Finding the nearest range neighbor |
GappedRanges | GappedRanges objects |
GappedRanges-class | GappedRanges objects |
gaps | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
gaps-method | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
Grouping | Grouping objects |
Grouping-class | Grouping objects |
grouplength | Grouping objects |
grouplength-method | Grouping objects |
grouprank | Grouping objects |
grouprank-method | Grouping objects |
gsub-method | Lists of Atomic Vectors in Natural and Rle Form |
H2LGrouping | Grouping objects |
H2LGrouping-class | Grouping objects |
high2low | Grouping objects |
high2low-method | Grouping objects |
Hits-examples | Examples of basic manipulation of Hits objects |
HitsList | List of Hits objects |
HitsList-class | List of Hits objects |
IntegerList | Lists of Atomic Vectors in Natural and Rle Form |
IntegerList-class | Lists of Atomic Vectors in Natural and Rle Form |
inter-range-methods | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
intersect-method | Set operations on IRanges and RangesList objects |
IntervalForest | Interval Search Forests |
IntervalForest-class | Interval Search Forests |
IntervalTree | Interval Search Trees |
IntervalTree-class | Interval Search Trees |
intra-range-methods | Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object |
IQR-method | Lists of Atomic Vectors in Natural and Rle Form |
IRanges | The IRanges constructor and supporting functions |
IRanges-class | IRanges and NormalIRanges objects |
IRanges-constructor | The IRanges constructor and supporting functions |
IRanges-utils | IRanges utility functions |
IRangesList | List of IRanges and NormalIRanges |
IRangesList-class | List of IRanges and NormalIRanges |
isDisjoint | Ranges objects |
isDisjoint-method | IRanges and NormalIRanges objects |
isDisjoint-method | Ranges objects |
isDisjoint-method | List of Ranges |
isEmpty-method | IRanges and NormalIRanges objects |
isEmpty-method | Ranges objects |
isNormal | Ranges objects |
isNormal-method | IRanges and NormalIRanges objects |
isNormal-method | List of IRanges and NormalIRanges |
isNormal-method | Ranges objects |
isNormal-method | List of Ranges |
iteratorFun | Applying over spaces |
iteratorFun-method | Applying over spaces |
iteratorFun<- | Applying over spaces |
iteratorFun<--method | Applying over spaces |
lapply-method | Lists of Atomic Vectors in Natural and Rle Form |
lapply-method | CompressedList objects |
lapply-method | Data on ranges |
length-method | CompressedList objects |
length-method | GappedRanges objects |
length-method | Grouping objects |
length-method | Interval Search Forests |
length-method | Interval Search Trees |
length-method | MaskCollection objects |
length-method | Nested Containment List objects |
length-method | Data on ranges |
length-method | Ranges objects |
length-method | Views objects |
length<--method | Grouping objects |
LogicalList | Lists of Atomic Vectors in Natural and Rle Form |
LogicalList-class | Lists of Atomic Vectors in Natural and Rle Form |
low2high | Grouping objects |
low2high-method | Grouping objects |
mad-method | Lists of Atomic Vectors in Natural and Rle Form |
ManyToOneGrouping | Grouping objects |
ManyToOneGrouping-class | Grouping objects |
mapCoords | Mapping of ranges to another sequence |
mapCoords-methods | Mapping of ranges to another sequence |
mapOrder | Grouping objects |
mapOrder-method | Grouping objects |
Mask | MaskCollection objects |
MaskCollection | MaskCollection objects |
MaskCollection-class | MaskCollection objects |
MaskCollection.show_frame | MaskCollection objects |
maskedratio | MaskCollection objects |
maskedratio-method | MaskCollection objects |
maskedwidth | MaskCollection objects |
maskedwidth-method | MaskCollection objects |
match-method | Comparing and ordering ranges |
Math-method | Lists of Atomic Vectors in Natural and Rle Form |
Math2-method | Lists of Atomic Vectors in Natural and Rle Form |
max-method | IRanges and NormalIRanges objects |
max-method | List of IRanges and NormalIRanges |
max-method | MaskCollection objects |
max-method | Summarize views on a vector-like object with numeric values |
mean-method | Lists of Atomic Vectors in Natural and Rle Form |
mean-method | Summarize views on a vector-like object with numeric values |
median-method | Lists of Atomic Vectors in Natural and Rle Form |
members | Grouping objects |
members-method | Grouping objects |
mendoapply-method | CompressedList objects |
merge-method | List of Ranges |
mergeByOverlaps | Finding overlapping ranges |
mid | Ranges objects |
mid-method | Ranges objects |
min-method | IRanges and NormalIRanges objects |
min-method | List of IRanges and NormalIRanges |
min-method | MaskCollection objects |
min-method | Summarize views on a vector-like object with numeric values |
mstack | Vector objects (old man page) |
mstack-method | Common operations on DataFrame objects |
mstack-method | Vector objects (old man page) |
multisplit | Split elements belonging to multiple groups |
names-method | CompressedList objects |
names-method | GappedRanges objects |
names-method | Grouping objects |
names-method | IRanges and NormalIRanges objects |
names-method | Interval Search Forests |
names-method | MaskCollection objects |
names-method | Nested Containment List objects |
names-method | Data on ranges |
names-method | Views objects |
names<--method | CompressedList objects |
names<--method | GappedRanges objects |
names<--method | Grouping objects |
names<--method | IRanges and NormalIRanges objects |
names<--method | MaskCollection objects |
names<--method | Data on ranges |
names<--method | Views objects |
narrow | Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object |
narrow-method | Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object |
nchar-method | Lists of Atomic Vectors in Natural and Rle Form |
NCList | Nested Containment List objects |
NCList-class | Nested Containment List objects |
NCLists | Nested Containment List objects |
NCLists-class | Nested Containment List objects |
ncol-method | List of DataFrames |
ncol-method | Data on ranges |
nearest | Finding the nearest range neighbor |
nearest-method | Finding the nearest range neighbor |
nearest-methods | Finding the nearest range neighbor |
newViews | Views objects |
ngap | GappedRanges objects |
ngap-method | GappedRanges objects |
nir_list | MaskCollection objects |
nir_list-method | MaskCollection objects |
nobj | Grouping objects |
nobj-method | Grouping objects |
NormalIRanges | IRanges and NormalIRanges objects |
NormalIRanges-class | IRanges and NormalIRanges objects |
NormalIRangesList | List of IRanges and NormalIRanges |
NormalIRangesList-class | List of IRanges and NormalIRanges |
nrow-method | List of DataFrames |
nrow-method | Data on ranges |
NumericList | Lists of Atomic Vectors in Natural and Rle Form |
NumericList-class | Lists of Atomic Vectors in Natural and Rle Form |
Ops-method | Lists of Atomic Vectors in Natural and Rle Form |
Ops-method | Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object |
order-method | Lists of Atomic Vectors in Natural and Rle Form |
order-method | Comparing and ordering ranges |
overlapsAny | Finding overlapping ranges |
overlapsAny-method | Finding overlapping ranges |
Partitioning | Grouping objects |
Partitioning-class | Grouping objects |
PartitioningByEnd | Grouping objects |
PartitioningByEnd-class | Grouping objects |
PartitioningByWidth | Grouping objects |
PartitioningByWidth-class | Grouping objects |
PartitioningMap | Grouping objects |
PartitioningMap-class | Grouping objects |
pgap | Set operations on IRanges and RangesList objects |
pgap-method | Set operations on IRanges and RangesList objects |
pintersect | Set operations on IRanges and RangesList objects |
pintersect-method | Set operations on IRanges and RangesList objects |
pmapCoords | Mapping of ranges to another sequence |
pmax-method | Lists of Atomic Vectors in Natural and Rle Form |
pmax.int-method | Lists of Atomic Vectors in Natural and Rle Form |
pmin-method | Lists of Atomic Vectors in Natural and Rle Form |
pmin.int-method | Lists of Atomic Vectors in Natural and Rle Form |
precede | Finding the nearest range neighbor |
precede-method | Finding the nearest range neighbor |
promoters | Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object |
promoters-method | Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object |
psetdiff | Set operations on IRanges and RangesList objects |
psetdiff-method | Set operations on IRanges and RangesList objects |
punion | Set operations on IRanges and RangesList objects |
punion-method | Set operations on IRanges and RangesList objects |
quantile-method | Lists of Atomic Vectors in Natural and Rle Form |
queryHits-method | List of Hits objects |
queryLength-method | List of Hits objects |
range | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
range-method | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
rangeComparisonCodeToLetter | Comparing and ordering ranges |
RangedData | Data on ranges |
rangedData | Applying over spaces |
RangedData-class | Data on ranges |
rangedData-method | Applying over spaces |
rangedData<- | Applying over spaces |
rangedData<--method | Applying over spaces |
RangedDataList | Lists of RangedData |
RangedDataList-class | Lists of RangedData |
RangedSelection | Selection of ranges and columns |
RangedSelection-class | Selection of ranges and columns |
Ranges | Ranges objects |
ranges | Views objects |
Ranges-class | Ranges objects |
Ranges-comparison | Comparing and ordering ranges |
ranges-method | Lists of Atomic Vectors in Natural and Rle Form |
ranges-method | List of Hits objects |
ranges-method | Nested Containment List objects |
ranges-method | Data on ranges |
ranges-method | Selection of ranges and columns |
ranges-method | Rle objects (old man page) |
ranges-method | Views objects |
ranges-method | List of Views |
ranges-method | Finding overlapping ranges |
ranges<- | Views objects |
ranges<--method | Data on ranges |
ranges<--method | Selection of ranges and columns |
ranges<--method | Views objects |
RangesList | List of Ranges |
RangesList-class | List of Ranges |
RangesORmissing | Finding the nearest range neighbor |
RangesORmissing-class | Finding the nearest range neighbor |
rank-method | Lists of Atomic Vectors in Natural and Rle Form |
RawList | Lists of Atomic Vectors in Natural and Rle Form |
RawList-class | Lists of Atomic Vectors in Natural and Rle Form |
rbind-method | List of DataFrames |
rbind-method | Data on ranges |
rdapply | Applying over spaces |
rdapply-method | Applying over spaces |
RDApplyParams | Applying over spaces |
RDApplyParams-class | Applying over spaces |
read.agpMask | Read a mask from a file |
read.gapMask | Read a mask from a file |
read.liftMask | Read a mask from a file |
read.Mask | Read a mask from a file |
read.rmMask | Read a mask from a file |
read.trfMask | Read a mask from a file |
reduce | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
reduce-method | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
reducerFun | Applying over spaces |
reducerFun-method | Applying over spaces |
reducerFun<- | Applying over spaces |
reducerFun<--method | Applying over spaces |
reducerParams | Applying over spaces |
reducerParams-method | Applying over spaces |
reducerParams<- | Applying over spaces |
reducerParams<--method | Applying over spaces |
reflect | Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object |
reflect-method | Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object |
relist-method | Group elements of a vector-like object into a list-like object |
relistToClass | Group elements of a vector-like object into a list-like object |
relistToClass-method | Group elements of a vector-like object into a list-like object |
rep-method | Vector objects (old man page) |
rep.int-method | Vector objects (old man page) |
resize | Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object |
resize-method | Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object |
restrict | Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object |
restrict-method | Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object |
rev-method | Vector objects (old man page) |
revElements-method | CompressedList objects |
reverse | reverse |
reverse-method | reverse |
RleList | Lists of Atomic Vectors in Natural and Rle Form |
RleList-class | Lists of Atomic Vectors in Natural and Rle Form |
RleList-method | Lists of Atomic Vectors in Natural and Rle Form |
RleViews | The RleViews class |
RleViews-class | The RleViews class |
RleViewsList | List of RleViews |
RleViewsList-class | List of RleViews |
rownames-method | List of DataFrames |
rownames-method | Data on ranges |
rownames<--method | List of DataFrames |
rownames<--method | Data on ranges |
runLength-method | Lists of Atomic Vectors in Natural and Rle Form |
runmean-method | Lists of Atomic Vectors in Natural and Rle Form |
runmed-method | Lists of Atomic Vectors in Natural and Rle Form |
runq-method | Lists of Atomic Vectors in Natural and Rle Form |
runsum-method | Lists of Atomic Vectors in Natural and Rle Form |
runValue-method | Lists of Atomic Vectors in Natural and Rle Form |
runValue<--method | Lists of Atomic Vectors in Natural and Rle Form |
runwtsum-method | Lists of Atomic Vectors in Natural and Rle Form |
score-method | Data on ranges |
score<--method | Data on ranges |
sd-method | Lists of Atomic Vectors in Natural and Rle Form |
selfmatch-method | Comparing and ordering ranges |
setdiff-method | Set operations on IRanges and RangesList objects |
setops-methods | Set operations on IRanges and RangesList objects |
shift | Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object |
shift-method | Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object |
shiftApply | Vector objects (old man page) |
shiftApply-method | Vector objects (old man page) |
show-method | Lists of Atomic Vectors in Natural and Rle Form |
show-method | List of DataFrames |
show-method | GappedRanges objects |
show-method | Grouping objects |
show-method | Interval Search Forests |
show-method | MaskCollection objects |
show-method | Data on ranges |
show-method | Ranges objects |
show-method | List of Ranges |
show-method | The RleViews class |
showAsCell-method | Lists of Atomic Vectors in Natural and Rle Form |
showAsCell-method | Ranges objects |
showAsCell-method | List of Ranges |
showAsCell-method | Vector objects (old man page) |
SimpleAtomicList | Lists of Atomic Vectors in Natural and Rle Form |
SimpleAtomicList-class | Lists of Atomic Vectors in Natural and Rle Form |
SimpleCharacterList | Lists of Atomic Vectors in Natural and Rle Form |
SimpleCharacterList-class | Lists of Atomic Vectors in Natural and Rle Form |
SimpleComplexList | Lists of Atomic Vectors in Natural and Rle Form |
SimpleComplexList-class | Lists of Atomic Vectors in Natural and Rle Form |
SimpleDataFrameList-class | List of DataFrames |
SimpleFactorList | Lists of Atomic Vectors in Natural and Rle Form |
SimpleFactorList-class | Lists of Atomic Vectors in Natural and Rle Form |
SimpleIntegerList | Lists of Atomic Vectors in Natural and Rle Form |
SimpleIntegerList-class | Lists of Atomic Vectors in Natural and Rle Form |
SimpleIRangesList | List of IRanges and NormalIRanges |
SimpleIRangesList-class | List of IRanges and NormalIRanges |
SimpleLogicalList | Lists of Atomic Vectors in Natural and Rle Form |
SimpleLogicalList-class | Lists of Atomic Vectors in Natural and Rle Form |
SimpleNormalIRangesList | List of IRanges and NormalIRanges |
SimpleNormalIRangesList-class | List of IRanges and NormalIRanges |
SimpleNumericList | Lists of Atomic Vectors in Natural and Rle Form |
SimpleNumericList-class | Lists of Atomic Vectors in Natural and Rle Form |
SimpleRangesList | List of Ranges |
SimpleRangesList-class | List of Ranges |
SimpleRawList | Lists of Atomic Vectors in Natural and Rle Form |
SimpleRawList-class | Lists of Atomic Vectors in Natural and Rle Form |
SimpleRleList | Lists of Atomic Vectors in Natural and Rle Form |
SimpleRleList-class | Lists of Atomic Vectors in Natural and Rle Form |
SimpleRleViewsList-class | List of RleViews |
SimpleSplitDataFrameList-class | List of DataFrames |
SimpleViewsList | List of Views |
SimpleViewsList-class | List of Views |
simplify | Applying over spaces |
simplify-method | Applying over spaces |
simplify<- | Applying over spaces |
simplify<--method | Applying over spaces |
slice | Slice a vector-like or list-like object |
slice-method | Slice a vector-like or list-like object |
slice-methods | Slice a vector-like or list-like object |
smoothEnds-method | Lists of Atomic Vectors in Natural and Rle Form |
solveUserSEW | The IRanges constructor and supporting functions |
solveUserSEW0 | The IRanges constructor and supporting functions |
sort-method | Lists of Atomic Vectors in Natural and Rle Form |
sort.List | Lists of Atomic Vectors in Natural and Rle Form |
space | List of Ranges |
space-method | List of Hits objects |
space-method | Data on ranges |
space-method | List of Ranges |
split-method | Data on ranges |
split<--method | 2 methods that should be documented somewhere else |
splitAsList | Group elements of a vector-like object into a list-like object |
splitAsList,ANY,List | Group elements of a vector-like object into a list-like object |
splitAsList,ANY,Rle | Group elements of a vector-like object into a list-like object |
splitAsList,ANY,vectorORfactor | Group elements of a vector-like object into a list-like object |
SplitDataFrameList | List of DataFrames |
SplitDataFrameList-class | List of DataFrames |
splitRanges | Rle objects (old man page) |
splitRanges-method | Rle objects (old man page) |
stack-method | List of DataFrames |
stack-method | List objects (old man page) |
stack-method | Lists of RangedData |
start-method | GappedRanges objects |
start-method | Grouping objects |
start-method | IRanges and NormalIRanges objects |
start-method | List of IRanges and NormalIRanges |
start-method | Interval Search Forests |
start-method | Interval Search Trees |
start-method | Nested Containment List objects |
start-method | Data on ranges |
start-method | Ranges objects |
start-method | List of Ranges |
start-method | Views objects |
start-method | List of Views |
start<- | Ranges objects |
start<--method | IRanges and NormalIRanges objects |
start<--method | Data on ranges |
start<--method | List of Ranges |
start<--method | Views objects |
sub-method | Lists of Atomic Vectors in Natural and Rle Form |
subject | Views objects |
subject-method | List of RleViews |
subject-method | Views objects |
subjectHits-method | List of Hits objects |
subjectLength-method | List of Hits objects |
subset-method | Vector objects (old man page) |
subsetByOverlaps | Finding overlapping ranges |
subsetByOverlaps-method | Finding overlapping ranges |
subviews | Views objects |
subviews-method | Views objects |
successiveIRanges | IRanges utility functions |
successiveViews | Views objects |
sum-method | Lists of Atomic Vectors in Natural and Rle Form |
sum-method | Summarize views on a vector-like object with numeric values |
Summary-method | Lists of Atomic Vectors in Natural and Rle Form |
Summary-method | Summarize views on a vector-like object with numeric values |
summary-method | List of IRanges and NormalIRanges |
t-method | List of Hits objects |
table-method | Lists of Atomic Vectors in Natural and Rle Form |
tapply-method | Vector objects (old man page) |
threebands | Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object |
threebands-method | Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object |
tile | Ranges objects |
tile-method | Ranges objects |
togroup | Grouping objects |
togroup-method | Grouping objects |
togrouplength | Grouping objects |
togrouplength-method | Grouping objects |
togrouprank | Grouping objects |
togrouprank-method | Grouping objects |
tolower-method | Lists of Atomic Vectors in Natural and Rle Form |
toupper-method | Lists of Atomic Vectors in Natural and Rle Form |
transform-method | List of DataFrames |
trim | Views objects |
trim-method | Views objects |
union-method | Set operations on IRanges and RangesList objects |
unique-method | Lists of Atomic Vectors in Natural and Rle Form |
unique.CompressedList | Lists of Atomic Vectors in Natural and Rle Form |
unique.RleList | Lists of Atomic Vectors in Natural and Rle Form |
universe | List of Ranges |
universe-method | Data on ranges |
universe-method | List of Ranges |
universe-method | List of Views |
universe<- | List of Ranges |
universe<--method | Data on ranges |
universe<--method | List of Ranges |
universe<--method | List of Views |
unlist,SimpleFactorList | Lists of Atomic Vectors in Natural and Rle Form |
unlist,SimpleRleList | Lists of Atomic Vectors in Natural and Rle Form |
unlist-method | CompressedList objects |
unlist-method | List of IRanges and NormalIRanges |
unlist-method | Lists of RangedData |
unlist-method | Ranges objects |
unsplit-method | 2 methods that should be documented somewhere else |
unstrsplit-method | Lists of Atomic Vectors in Natural and Rle Form |
update-method | IRanges and NormalIRanges objects |
update-method | Ranges objects |
updateObject-method | Update an object of a class defined in the IRanges package to its current class definition |
updateObject-methods | Update an object of a class defined in the IRanges package to its current class definition |
values-method | Data on ranges |
values<--method | Data on ranges |
var-method | Lists of Atomic Vectors in Natural and Rle Form |
view-summarization-methods | Summarize views on a vector-like object with numeric values |
viewApply | Summarize views on a vector-like object with numeric values |
viewApply-method | Summarize views on a vector-like object with numeric values |
viewMaxs | Summarize views on a vector-like object with numeric values |
viewMaxs-method | Summarize views on a vector-like object with numeric values |
viewMeans | Summarize views on a vector-like object with numeric values |
viewMeans-method | Summarize views on a vector-like object with numeric values |
viewMins | Summarize views on a vector-like object with numeric values |
viewMins-method | Summarize views on a vector-like object with numeric values |
viewRangeMaxs | Summarize views on a vector-like object with numeric values |
viewRangeMaxs-method | Summarize views on a vector-like object with numeric values |
viewRangeMins | Summarize views on a vector-like object with numeric values |
viewRangeMins-method | Summarize views on a vector-like object with numeric values |
Views | Views objects |
Views-class | Views objects |
Views-method | The RleViews class |
Views-method | List of RleViews |
ViewsList | List of Views |
ViewsList-class | List of Views |
viewSums | Summarize views on a vector-like object with numeric values |
viewSums-method | Summarize views on a vector-like object with numeric values |
viewWhichMaxs | Summarize views on a vector-like object with numeric values |
viewWhichMaxs-method | Summarize views on a vector-like object with numeric values |
viewWhichMins | Summarize views on a vector-like object with numeric values |
viewWhichMins-method | Summarize views on a vector-like object with numeric values |
vmembers | Grouping objects |
vmembers-method | Grouping objects |
which-method | Lists of Atomic Vectors in Natural and Rle Form |
which.max-method | Lists of Atomic Vectors in Natural and Rle Form |
which.max-method | Summarize views on a vector-like object with numeric values |
which.min-method | Lists of Atomic Vectors in Natural and Rle Form |
which.min-method | Summarize views on a vector-like object with numeric values |
whichAsIRanges | IRanges utility functions |
whichFirstNotNormal | Ranges objects |
whichFirstNotNormal-method | Ranges objects |
whichFirstNotNormal-method | List of Ranges |
width | Ranges objects |
width-method | Grouping objects |
width-method | IRanges and NormalIRanges objects |
width-method | List of IRanges and NormalIRanges |
width-method | Interval Search Forests |
width-method | MaskCollection objects |
width-method | Nested Containment List objects |
width-method | Data on ranges |
width-method | Ranges objects |
width-method | List of Ranges |
width-method | Views objects |
width-method | List of Views |
width<- | Ranges objects |
width<--method | IRanges and NormalIRanges objects |
width<--method | Data on ranges |
width<--method | List of Ranges |
width<--method | Views objects |
window<--method | Vector objects (old man page) |
window<-.factor | Vector objects (old man page) |
window<-.Vector | Vector objects (old man page) |
window<-.vector | Vector objects (old man page) |
with-method | Vector objects (old man page) |
within-method | Data on ranges |
!-method | CompressedList objects |
$<--method | CompressedList objects |
$<--method | Data on ranges |
%outside% | Finding overlapping ranges |
%over% | Finding overlapping ranges |
%within% | Finding overlapping ranges |
[-method | List of DataFrames |
[-method | Interval Search Forests |
[-method | Data on ranges |
[<--method | List of DataFrames |
[[-method | List of DataFrames |
[[-method | Data on ranges |
[[<--method | CompressedList objects |
[[<--method | List of DataFrames |
[[<--method | Data on ranges |