Package: MEDIPS
Type: Package
Title: DNA IP-seq data analysis
Version: 1.20.1
Date: 2016-01-19
Author: Lukas Chavez, Matthias Lienhard, Joern Dietrich, Isaac Lopez Moyado
Maintainer: Lukas Chavez <l.chavez@dkfz.de>
Description: MEDIPS was developed for analyzing data derived from
        methylated DNA immunoprecipitation (MeDIP) experiments followed
        by sequencing (MeDIP-seq). However, MEDIPS provides functionalities for the analysis of any kind of quantitative
        sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others)
        including calculation of differential coverage between groups
        of samples and saturation and correlation analysis.
License: GPL (>=2)
LazyLoad: yes
Depends: R (>= 3.0), BSgenome, Rsamtools
Imports: GenomicRanges, Biostrings, graphics, gtools, IRanges, methods,
        stats, utils, edgeR, DNAcopy, biomaRt, rtracklayer,
        preprocessCore
Suggests: BSgenome.Hsapiens.UCSC.hg19, MEDIPSData, BiocStyle
biocViews: DNAMethylation, CpGIsland, DifferentialExpression,
        Sequencing, ChIPSeq, Preprocessing, QualityControl,
        Visualization, Microarray, Genetics, Coverage,
        GenomeAnnotation, CopyNumberVariation, SequenceMatching
NeedsCompilation: no
Packaged: 2016-01-20 02:35:27 UTC; biocbuild
Built: R 3.2.3; ; 2016-10-26 17:58:56 UTC; unix