import(AnnotationDbi)
import(VariantFiltering)

importMethodsFrom(RSQLite, dbConnect,
                           dbDisconnect)
importMethodsFrom(VariantAnnotation, readVcf,
                                     scanVcfHeader,
                                     ScanVcfParam,
                                     info)
importMethodsFrom(Rsamtools, headerTabix)
importMethodsFrom(IRanges, elementLengths,
                           start,
                           width,
                           nchar,
                           unlist)
importMethodsFrom(GenomicRanges, seqnames,
                                 rowRanges)
importMethodsFrom(Biostrings, unlist,
                              unstrsplit)

importFrom(Biobase, createPackage)
importFrom(RSQLite, SQLite)
importFrom(Rsamtools, TabixFile)

export(makeMafDbPackageExAC,
       MafDbExACdefaultURL,
       MafDbExACdefaultPkgName)

## the MafDb object is exported dynamically at load time (see R/zzz.R)