# This is part of the parser for processing the results of blast.

while($line=<IN1>){
	chomp($line);
	@array = split(/\t/,$line) ;
	$L{$array[0]} = $array[1];
}

while($line=<IN2>){
	chomp($line);
	@array = split(/\t/,$line) ;
	$L{$array[0]} = $array[1];
}

@match = split(/\t/, $organism) ;

print OUT "query\tsubject\tidentity\talignment_length\t".
"mismatches\tgap openings\tq.start\tq.end\ts.start\ts.end\t".
"e-value\tbit_score\n" ;
while($line=<DATA>){
	@array = split(/\t/,$line) ;
	if (($array[2]/100 >=$match[0]) and ($array[3]/$L{$array[0]} >=$match[1]) 
	     and ($array[3]/$L{$array[1]} >=$match[1]) ){
		print OUT $line ;
	}
}

close IN1;
close IN2;
close DATA;
close OUT;