# This is part of the parser for DBSubLoc data 

print OUT  "SPAC\tSPECIES\tDE\tSUBCELLULAR\tSQ\n" ;
&setOut;

while($line=<DATA>){
	chomp($line);
	if($line=~/^DE\s+(.*)/){
		$outFile{"DE"} = $1 ;
	}
	elsif($line=~/^OS\s+(.*)\./){
		$outFile{"ORGANISM"} = $1 ;
	}
	elsif($line=~/^LC\s+(.*)/){
		$outFile{"LC"} = $1 ;
		$outFile{"LC"} =~s/\t/;/g ;
	}
	elsif($line=~/^CX\s+SWISS-PROT:([\w\d]+)/){
		$outFile{"ID"} = $1 ;
	}
	elsif($line=~/^SQ\s+(.*)/){
		if( $outFile{"SQ"} eq "NA" ){
			$outFile{"SQ"}=$1;
		}else{
			$outFile{"SQ"}=$outFile{"SQ"}.$1;
		}
	}
	
	if($line=~/^\/\//){
		$outFile{"SQ"}=~s/[\s\n\/]//g;
    		&writeOut ;
    		&setOut ;
	}
}
close DATA;
close OUT;

sub writeOut {
 	print OUT $outFile{"ID"}, "\t", 
	$outFile{"ORGANISM"}, "\t",
	$outFile{"DE"}, "\t",
  	$outFile{"LC"}, "\t",
	$outFile{"SQ"}, "\n" ;
}

sub setOut{
	$outFile{"ID"} = "NA";	
	$outFile{"ORGANISM"} = "NA";	
	$outFile{"DE"} = "NA";	
	$outFile{"LC"} = "NA";	
	$outFile{"SQ"} = "NA";	
}