\name{#PKGNAME#PATH} \alias{#PKGNAME#PATH} \title{Map protein identifiers to KEGG pathway identifiers} \description{ KEGG (Kyoto Encyclopedia of Genes and Genomes) maintains pathway data for various organisms. #PKGNAME#PATH maps protein identifiers to the identifiers used by KEGG for pathways } \details{ Each KEGG pathway has a name and identifier. Pathway name for a given pathway identifier can be obtained using the KEGG data package that can either be built using AnnBuilder or downloaded from Bioconductor \url{http://www.bioconductor.org}. Graphic presentations of pathways are searchable at url{http://www.genome.ad.jp/kegg/pathway.html} by using pathway identifiers as keys. Mappings were based on data provided by: #SOURCE# #KEGG# #PATH# Package built #DATE# } \references{ \url{http://www.genome.ad.jp/kegg/} } \examples{ # Convert the environment to a list xx <- as.list(#PKGNAME#PATH) # Remove protein identifiers that do not map to any pathway id xx <- xx[!is.na(xx)] if(length(xx) > 0){ # The pathway identifiers for the first two elements of XX xx[1:2] # Get the first one xx[[1]] } } \keyword{datasets}