RPA: probabilistic analysis of probe reliability and gene expression
RPA.iteration Estimating model parameters d and tau2.
RPA.preprocess Preprocess AffyBatch object for RPA.
frpa frozen-RPA preprocessing using precalculated probe parameters
hyperparameter.update Update hyperparameters Update shape (alpha) and scale (beta) parameters of the inverse gamma distribution.
online.quantile Quantile normalization tools for online preprocessing. Estimate quantiles for quantile normalization based on subset of the data (random, or specified by the user).
probeplot Plot RPA results and probe-level data for a specified probeset.
rpa.complete RPA preprocessing, also returns probe parameters
rpa.online RPA-online for preprocessing very large expression data sets.
rpa.plot Plot RPA results and probe-level data for a specified probeset.
rpaplot Plot RPA results and probe-level data for a specified probeset.
sample.probeset Toydata generator for probeset data.