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| RPA-package | RPA: probabilistic analysis of probe reliability and gene expression |
| collect.hyperparameters | collect.hyperparameters |
| d.update.fast | d.update.fast |
| estimate.affinities | estimate.affinities |
| estimate.hyperparameters | estimate.hyperparameters Hyperparameter estimation |
| frpa | frpa frozen-RPA preprocessing using precalculated probe parameters |
| get.batches | get.batches Split data into batches |
| get.probe.matrix | get.probe.matrix |
| get.probe.parameters | get.probe.parameters |
| hyperparameter.update | hyperparameter.update Update hyperparameters Update shape (alpha) and scale (beta) parameters of the inverse gamma distribution. |
| online.quantile | online.quantile Quantile normalization tools for online preprocessing. Estimate quantiles for quantile normalization based on subset of the data (random, or specified by the user). |
| probe.parameters.tolist | probe.parameters.tolist |
| probe.performance | probe.performance |
| probeplot | probeplot Plot RPA results and probe-level data for a specified probeset. |
| probetable | probetable |
| RPA | RPA: probabilistic analysis of probe reliability and gene expression |
| rpa | rpa Wrapper for RPA preprocessing. |
| rpa.complete | rpa.complete RPA preprocessing, also returns probe parameters |
| rpa.fit | rpa.fit |
| RPA.iteration | RPA.iteration Estimating model parameters d and tau2. |
| rpa.online | rpa.online RPA-online for preprocessing very large expression data sets. |
| rpa.plot | rpa.plot Plot RPA results and probe-level data for a specified probeset. |
| RPA.preprocess | RPA.preprocess Preprocess AffyBatch object for RPA. |
| rpa.summarize | rpa.summarize |
| rpaplot | rpaplot Plot RPA results and probe-level data for a specified probeset. |
| sample.probeset | sample.probeset Toydata generator for probeset data. |
| summarize.batch | summarize.batch |
| summarize.batches | summarize.batches |
| updating.hyperparameters | updating.hyperparameters Hyperparameter update |