Binary alignment (BAM), FASTA, variant call (BCF), and tabix
file import
Martin Morgan, Herv\'e Pag\`es, Valerie Obenchain, Nathaniel Hayden
This package provides an interface to the 'samtools',
        'bcftools', and 'tabix' utilities (see 'LICENCE') for
        manipulating SAM (Sequence Alignment / Map), FASTA, binary
        variant call (BCF) and compressed indexed tab-delimited
        (tabix) files.
methods, S4Vectors (>= 0.7.11), IRanges (>= 2.3.7),
GenomeInfoDb (>= 1.1.3), GenomicRanges (>= 1.21.6), XVector (>=
0.9.1), Biostrings (>= 2.37.1)
utils, BiocGenerics (>= 0.1.3), zlibbioc, bitops, BiocParallel
GenomicAlignments, ShortRead (>= 1.19.10), GenomicFeatures,
TxDb.Dmelanogaster.UCSC.dm3.ensGene, KEGG.db,
TxDb.Hsapiens.UCSC.hg18.knownGene, RNAseqData.HNRNPC.bam.chr14,
BSgenome.Hsapiens.UCSC.hg19, pasillaBamSubset, RUnit, BiocStyle
DataImport, Sequencing, Coverage, Alignment, QualityControl