arrangeFigs |
Arranging two trellis objects on a grid. |
arrangeSideBySide |
Helper function to arrange two trellis objects side by side on a grid. |
centromere |
Coordinates of centromere |
dataFrame |
Generic function for coercing gSet objects to data.frame |
dataFrame-method |
Construct a data.frame from genomic data for plotting |
dataFrame-methods |
Construct a data.frame from genomic data for plotting |
getCytoband |
getCytoband |
latticeFigs |
Generate trellis objects of log R ratios and B allele frequencies |
plotCytoband2 |
Plots idiogram for one chromosome |
plotIdiogram |
Plots idiogram for one chromosome |
xypanel |
A panel function for plotting copy number versus physical position |
xypanelBaf |
Panel function for plotting copy number and B allele frequencies for a genomic interval. |
xyplot2 |
Plot copy number and physical position for a set of genomic intervals. |
xyplot2-method |
Plot copy number and physical position for a set of genomic intervals. |
xyplotLrrBaf |
xyplot lattice function for RangedData and oligoSnpSet objects |