# Sequence information for GRCh38.p2 assembly # ------------------------------------------- # # This information can be obtained from: # # http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/data/index.shtml # # (select GRCh38.p2), or from: # # ftp://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/All/GCF_000001405.28.assembly.txt # # For chMT, you can get the RefSeqID by looking at 5th col in output of: # # grep 'GRCh38.p2' ds_flat_chMT.flat | grep 'chr=MT' | more # # then lookup RefSeqID NC_012920.1 on: # # http://www.ncbi.nlm.nih.gov/nuccore/ # # and, finally, on the result page, click on "Identical GenBank Sequence" (on # the right, under Related information") to get the GenBankID. # # seqnames seqlengths isCircular GenBankID RefSeqID ch1 248956422 FALSE CM000663.2 NC_000001.11 ch2 242193529 FALSE CM000664.2 NC_000002.12 ch3 198295559 FALSE CM000665.2 NC_000003.12 ch4 190214555 FALSE CM000666.2 NC_000004.12 ch5 181538259 FALSE CM000667.2 NC_000005.10 ch6 170805979 FALSE CM000668.2 NC_000006.12 ch7 159345973 FALSE CM000669.2 NC_000007.14 ch8 145138636 FALSE CM000670.2 NC_000008.11 ch9 138394717 FALSE CM000671.2 NC_000009.12 ch10 133797422 FALSE CM000672.2 NC_000010.11 ch11 135086622 FALSE CM000673.2 NC_000011.10 ch12 133275309 FALSE CM000674.2 NC_000012.12 ch13 114364328 FALSE CM000675.2 NC_000013.11 ch14 107043718 FALSE CM000676.2 NC_000014.9 ch15 101991189 FALSE CM000677.2 NC_000015.10 ch16 90338345 FALSE CM000678.2 NC_000016.10 ch17 83257441 FALSE CM000679.2 NC_000017.11 ch18 80373285 FALSE CM000680.2 NC_000018.10 ch19 58617616 FALSE CM000681.2 NC_000019.10 ch20 64444167 FALSE CM000682.2 NC_000020.11 ch21 46709983 FALSE CM000683.2 NC_000021.9 ch22 50818468 FALSE CM000684.2 NC_000022.11 chX 156040895 FALSE CM000685.2 NC_000023.11 chY 57227415 FALSE CM000686.2 NC_000024.10 chMT 16569 TRUE J01415.2 NC_012920.1