Assays-class            Assays objects
RangedSummarizedExperiment-class
                        RangedSummarizedExperiment objects
SummarizedExperiment0-class
                        SummarizedExperiment0 objects
coverage-methods        Coverage of a RangedSummarizedExperiment object
findOverlaps-methods    Finding overlapping ranges in
                        RangedSummarizedExperiment objects
inter-range-methods     Inter range transformations of a
                        RangedSummarizedExperiment object
intra-range-methods     Intra range transformations of a
                        RangedSummarizedExperiment object
makeSummarizedExperimentFromExpressionSet
                        Make a RangedSummarizedExperiment object from
                        an ExpressionSet and vice-versa
nearest-methods         Finding the nearest range neighbor in
                        RangedSummarizedExperiment objects
readKallisto            Input kallisto or kallisto bootstrap results.