Annotate variants, compute amino acid coding changes,
        predict coding outcomes
c(person("Valerie", "Obenchain", role=c("aut", "cre"),
        email="maintainer@bioconductor.org"),
    person("Martin", "Morgan", role="aut"),
    person("Michael", "Lawrence", role="aut"),
    person("Stephanie", "Gogarten", role="ctb"))
R (>= 2.8.0), methods, BiocGenerics (>= 0.15.3), GenomeInfoDb
(>= 1.1.3), GenomicRanges (>= 1.19.47), SummarizedExperiment
(>= 0.3.1), Rsamtools (>= 1.19.52)
utils, DBI, zlibbioc, Biobase, S4Vectors (>= 0.7.11), IRanges
(>= 2.3.25), XVector (>= 0.5.6), Biostrings (>= 2.33.5),
AnnotationDbi (>= 1.27.9), BSgenome (>= 1.37.6), rtracklayer
(>= 1.25.16), GenomicFeatures (>= 1.19.17)
RUnit, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP.20110815,
SNPlocs.Hsapiens.dbSNP.20101109, SIFT.Hsapiens.dbSNP132,
SIFT.Hsapiens.dbSNP137, PolyPhen.Hsapiens.dbSNP131, snpStats,
ggplot2, BiocStyle
S4Vectors, IRanges, XVector, Biostrings, Rsamtools
DataImport, Sequencing, SNP, Annotation, Genetics,
VariantAnnotation
Valerie Obenchain [aut, cre],
  Martin Morgan [aut],
  Michael Lawrence [aut],
  Stephanie Gogarten [ctb]