Seasonal influenza (H3N2) HA segment data
Hardy-Weinberg Equilibrium test for multilocus data
Test differences in expected heterozygosity (Hs)
Converting genind/genpop objects to other classes
Compute and optimize a-score for Discriminant Analysis of Principal Components (DAPC)
Represents a cloud of points with colors
Returns original points in results paths of an object of class 'monmonier'
Discriminant Analysis of Principal Components (DAPC)
Graphics for Discriminant Analysis of Principal Components (DAPC)
Convert a data.frame of allele data to a genind object.
Extract Single Nucleotide Polymorphism (SNPs) from alignments
find.cluster: cluster identification using successive K-means
adegenet formal class (S4) for individual genotypes
Convert a genind object to a data.frame.
Conversion from a genind to a genpop object
adegenet formal class (S4) for allele counts in populations
Auxiliary functions for genlight objects
Principal Component Analysis for genlight objects
Access and manipulate the population hierarchy for genind or genlight objects.
Function hybridize takes two genind in inputs and generates hybrids individuals having one parent in both objects.
Importing data from several softwares to a genind object
Assess polymorphism in genind/genpop objects
Microsatellites genotypes of 15 cattle breeds
Boundary detection using Monmonier algorithm
Identify mutations between DNA sequences
Microsatellites genotypes of 237 cats from 17 colonies of Nancy (France)
Convert objects with obsolete classes into new objects
Manipulate the population factor of genind objects.
Compute the proportion of typed elements
Reading PLINK Single Nucleotide Polymorphism data
Reading Single Nucleotide Polymorphism data
Pool several genotypes into a single dataset
Microsatellites genotypes of 335 chamois (Rupicapra rupicapra) from the Bauges mountains (France)
Select genotypes of well-represented populations
SeqTrack algorithm for reconstructing genealogies
Importing data from an alignement of sequences to a genind object
Simulated genotypes of two georeferenced populations
Analyse the position of polymorphic sites
Access and manipulate the population strata for genind or genlight objects.
Functions to access online resources for adegenet
Cross-validation for Discriminant Analysis of Principal Components (DAPC)