1. Dictionary
2. Cell coordinates and cell indices
9. Advanced - Cell-index maps for reading and writing
Package affxparser
Applies a function to a list of fields of each group in a CDF structure
Applies a function over the groups in a CDF structure
Moves CEL files to subdirectories with names corresponding to the chip types
Adds the number of allele A and allele B mismatching nucleotides of the probes in a CDF structure
Adds the PLASQ types for the probes in a CDF structure
Adds probe offsets to the groups in a CDF structure
Gets a subset of groups fields in a CDF structure
Gets a subset of groups in a CDF structure
Function to immitate Affymetrix' gtype\_cel\_to\_pq software
Creates a valid CEL header from a CDF header
Function to join CDF allele A and allele B groups strand by strand
Function to join CDF groups with the same names
Function to re-arrange CDF groups values in quartets
Orders the fields according to the value of another field in the same CDF group
Orders the columns of fields according to the values in a certain row of another field in the same CDF group
Sets the dimension of an object
Compares the contents of two CDF files
Compares the contents of two CEL files
Converts a CDF into the same CDF but with another format
Converts a CEL into the same CEL but with another format
Copies a CEL file
Creates an empty CEL file
Search for CDF files in multiple directories
Finds one or several files in multiple directories
Inverts a read or a write map
Checks if a file is a CEL file or not
Parses a DAT header string
Parses a Bpmap file
Reads an Affymetrix Command Console Generic (CCG) Data file
Reads an the header of an Affymetrix Command Console Generic (CCG) file
Parsing a CDF file using Affymetrix Fusion SDK
Reads (one-based) cell indices of units (probesets) in an Affymetrix CDF file
Reads units (probesets) from an Affymetrix CDF file
Reads group names for a set of units (probesets) in an Affymetrix CDF file
Reads the header associated with an Affymetrix CDF file
Checks if cells in a CDF file are perfect-match probes or not
Gets the number of cells (probes) that each group of each unit in a CDF file
Reads the QC units of CDF file
Reads unit (probeset) names from an Affymetrix CDF file
Reads units (probesets) from an Affymetrix CDF file
Generates an Affymetrix cell-index write map from a CDF file
Reads an Affymetrix CEL file
Parsing the header of an Affymetrix CEL file
Reads the intensities contained in several Affymetrix CEL files
Reads a spatial subset of probe-level data from Affymetrix CEL files
Reads probe-level data ordered as units (probesets) from one or several Affymetrix CEL files
A function to read Affymetrix CHP files
Parsing a CLF file using Affymetrix Fusion SDK
Parsing a CLF file using Affymetrix Fusion SDK
Read the header of a CLF file.
Parsing a PGF file using Affymetrix Fusion SDK
Parsing a PGF file using Affymetrix Fusion SDK
Read the header of a PGF file into a list.
Updates a CEL file
Updates a CEL file unit by unit
Creates a binary CDF file
Writes a CDF header
Writes CDF QC units
Writes CDF units
Writes a CEL header to a connection
Writes BPMAP and TPMAP files.