citHeader("A number of different references are relevant for affyPLM and the methodology implemented there in:") citEntry(entry="phdthesis", title="Low Level Analysis of High-density Oligonucleotide Array Data: Background, Normalization and Summarization", year = "2004", school = "University of California, Berkeley.", author = person(first="Benjamin",middle="M",last="Bolstad"), textVersion="Bolstad, BM (2004) Low Level Analysis of High-density Oligonucleotide Array Data: Background, Normalization and Summarization. Dissertation. University of California, Berkeley." , header = "General methodology for fitPLM, threestep and normalization methods") citEntry(entry="inbook", title = "Quality Assessment of Affymetrix GeneChip Data", author = personList(person(first="Benjamin",middle="M",last="Bolstad"), person(first="Francois",last="Collin"), person(first="Julia",last="Brettschneider"), person(first="Ken",last="Simpson"), person(first="Leslie",last="Cope"), person(first="Rafael",middle="A",last="Irizarry"), person(first="Terence",middle="P",last="Speed")), booktitle="Bioinformatics and Computational Biology Solutions using R and Bioconductor", editor=personList(person("R.","Gentleman"),person("V.","Carey"),person("W.","Huber"),person("R","Irizarry"),person("S","Dudoit")), publisher="Springer", address="New York", year = 2005, chapter = 3, pages ="33--47", textVersion = paste("Bolstad BM, Collin F, Brettschneider J, Simpson K, Cope L, Irizarry RA, and Speed TP. (2005) Quality Assessment of Affymetrix GeneChip Data in Bioinformatics and Computational Biology Solutions Using R and Bioconductor. Gentleman R, Carey V, Huber W, Irizarry R, and Dudoit S. (Eds.), Springer, New York."), header="Applying the software routines for quality assessment") citEntry(entry="article", title="Quality assessment for short oligonucleotide arrays.", author=personList(person(first="Julia",last="Brettschneider"), person(first="Francois",last="Collin"), person(first="Benjamin",middle="M",last="Bolstad"), person(first="Terence",middle="P",last="Speed")), journal= "Technometrics", year="2007", volume="In press", textVersion=paste("Brettschneider J, Collin F, Bolstad BM, and Speed TP. (2007) Quality assessment for short oligonucleotide arrays. Technometrics. In press"), header="Quality assessment methodology, NUSE and RLE") citFooter("Considerable effort has been put into developing affyPLM. If you make use of this software package please take the time to cite it appropriately.")