BASH - BeadArray Subversion of Harshlight
Create files for a Gene Expression Omnibus submission
HULK - Bead Array Normalization by NEighbourhood Residuals
The beadarray package: a tool for low-level analysis of Illumina BeadArrays
Perform check for misregistered array segments.
Convert a BeadLevelList object into a beadLevelData object
A function to generate a targets file given a directory of Illumina bead-level files
Get raw data from a beadLevelData object
Classify each bead according to its control status
Add, modify or remove data in a beadLevelData object
Function to construct the classic MA plots from a dataset
Accessing metrics information in bead-level objects
Gets the number of beads from a beadLevelData object
Plotting the intensities of selected beads on a section
Function to Plot the Layout of an Illumina BeadChip
Scatter plots and MA-plots for all specified arrays
Produce plots of the Illumina tiff images
Prepare iScan data for use with beadarray
Read a Sample sheet for a BeadArray experiment
Gets the section names from a beadLevelData Object
Functions for transforming the data store in a 'beadLevelData' object for easier visualisation or summarisation.