A panel function for plotting prediction regions and log-normalized intensities
Methods for class "AssayData" in crlmm
crlmm methods for class "CNSet"
Methods for Function 'BafLrrSetList' in Package 'crlmm' ~~
Class '"PredictionRegion"'
Accessors for batch-specific summary statistics.
Calculate log R ratios and B allele frequencies.
Reads cel files and return an error if a file is not read
Object of class 'CNSet'
quantile normalize nonpolymorphic markers
Construct an object of class CNSet from Affymetrix cel files
Instantiate an object of class CNSet for the Infinium platforms.
Accessors for allele-specific or total copy number
Genotype Calling via CRLMM Algorithm
Genotype oligonucleotide arrays with CRLMM
Locus- and allele-specific estimation of copy number
Genotype Illumina Infinium II BeadChip data with CRLMM
Read and Genotype Illumina Infinium II BeadChip data with CRLMM
Preprocessing and genotyping of Illumina Infinium II arrays.
Preprocessing and genotyping of Affymetrix arrays.
Genotype Affymetrix CEL files
Genotyping of Illumina Infinium II arrays.
The possible genotypes for an integer copy number.
Calculate the posterior probability for integer copy numbers.
Prediction regions for integer copy number
Preprocessing of Illumina Infinium II arrays.
Read X and Y intensities from GenCall output
Reads Idat Files from Infinium II Illumina BeadChips
Preprocessing tool for SNP arrays.
Quantile normalize intensities for SNPs
Supported annotation packages for crlmm genotyping
Plot prediction regions and normalized intensities.