Genotype Calling (CRLMM) and Copy Number Analysis tool for
Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
Benilton S Carvalho, Robert Scharpf, Matt Ritchie, Ingo
        Ruczinski, Rafael A Irizarry
Benilton S Carvalho <benilton@unicamp.br>,
Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie
<mritchie@wehi.EDU.AU>
Faster implementation of CRLMM specific to SNP 5.0 and 6.0
        arrays, as well as a copy number tool specific to 5.0, 6.0, and
        Illumina platforms
methods, Biobase (>= 2.15.4), BiocGenerics, affyio (>=
1.23.2), illuminaio, ellipse, mvtnorm, splines, stats, SNPchip,
utils, lattice, ff, foreach, RcppEigen (>= 0.3.1.2.1),
matrixStats, VGAM, parallel
hapmapsnp6, genomewidesnp6Crlmm (>= 1.0.7), GGdata, snpStats,
RUnit
AllGenerics.R AllClasses.R methods-AssayData.R methods-CNSet.R
methods-CNSetLM.R methods-eSet.R methods-SnpSuperSet.R
methods-PredictionRegion.R cnrma-functions.R cnset-accessors.R
crlmm-functions.R crlmmGT2.R crlmm-illumina.R krlmm.R
snprma-functions.R utils.R zzz.R test_crlmm_package.R