Bk - Calculating Fowlkes-Mallows Index for two dendrogram
Bk permutation - Calculating Fowlkes-Mallows Index for two dendrogram
Bk plot - ploting the Fowlkes-Mallows Index of two dendrogram for various k's
Calculating Fowlkes-Mallows Index under H0
Calculating Fowlkes-Mallows index using the profdpm R package
Global Comparison of two (or more) dendrograms
Check if all the elements in a vector are unique
Convert dendrogram Objects to Class hclust
Populates dendextend functions into dendextend_options
Assign values to edgePar of dendrogram's branches
Assign values to edgePar of dendrogram's leaves
Assign values to nodePar of dendrogram's leaves
Assign values to nodePar of dendrogram's nodes
Change col/lwd/lty of branches based on clusters
Change col/lwd/lty of branches matching labels condition
Collapse branches under a tolerance level
Color tree's branches according to sub-clusters
Color dend's labels according to sub-clusters
Correlation matrix between a list of trees.
Proportion of commong nodes between two trees
Cophenetic correlation between two trees
Counts the number of terminal nodes (merging 0 nodes!)
Cut a dendrogram - and run a function on the output
Cut a Tree (Dendrogram/hclust/phylo) into Groups of Data
cutree for dendrogram (by 1 height only!)
cutree for dendrogram (by 1 k value only!)
Get or set current defaults for d3dendrogram
Plots two trees side by side, highlighting edges unique to each tree in red.
Functions for extending dendrogram objects
Creating a dendlist object from several dendrograms
Topological Distances Between Two dendrograms
Finds distinct edges in one tree compared to another
Find the (estimated) number of clusters for a dendrogram using average silhouette width
Flatten the branches of a dendrogram's root
Get height attributes from a dendrogram's children
Get/set attributes of dendrogram's leaves
Get an attribute of the branches of a dendrogram's leaves
Get the colors of the branches of a dendrogram's leaves
Get the x-y coordinates of a dendrogram's nodes
get attributes from the dendrogram's root(!) branches
Which height will result in which k for a dendrogram
Highlight distint edges in a tree (compared to another one)
Identify Clusters in a Dendrogram (not hclust)
Checks if an object is of class dendlist
Microarray gene expression dataset from Khan et al., 2001. Subset of 306 genes.
Retrieve/assign cex to the labels of a dendrogram
Retrieve/assign colors to the labels of a dendrogram
Find lowest common branch were the two items are shared
Adjust the order of one dendrogram based on another (using labels)
Adjust the order of one dendrogram based on another (using order)
Counts the number of nodes (Vertices) in a tree
Ordering of the Leaves in a hclust Dendrogram
A list with labels for each subtree (edge)
Plotting a left-tip-adjusted horizontal dendrogram
The significant branches in a dendrogram, based on a pvclust object
Significance gradient of branches in a dendrogram (via pvclust)
Fix rank of leaves order values in a dendrogram
Draw Rectangles Around a Dendrogram's Clusters
Remove all edgePar values from a dendrogram's branches
Remove all nodePar values from a dendrogram's leaves
Remove all nodePar values from a dendrogram's nodes
Rotates a dendrogram based on a seriation of a distance matrix
Sorts two clusters vector by their names
Sorts a distance matrix by rows and columns names
Creates completely blank theme in ggplot
Stepwise untangle one tree compared to another
Stepwise untangle two trees one at a time
Which node id is common to a group of labels