Data frame describing loci on the 27 and 450k arrays.
The base class for storing Illumina Methylation data
Class "MethyLumiM": for Illumina Methylation microarray data using logRatios
Class '"MethyLumiQC"' for holding Illumina methylation QC data
Class '"MethyLumiSet"' for containing Illumina methylation data
Estimate methylation M-value matrix
Extract the Barcode and Position Information from Sentrix ID
Annotation-based Filtering of Features (CpG sites) in a MethyLumiSet or MethyLumiM object
methylumi accessors
Return a data.frame of AssayData name substitutions.
Class '"methylData"', superclass for MethyLumiSet and MethyLumiM
methylumIDAT
Handle Illumina methylation data
Generics defined in methylumi
Load data from Illumina methylation platform
Example SAM format Illumina methylation dataset
Normalize a MethyLumiSet, accounting for dye bias
Plot the sample intensities.
Methods for dealing with control data for Illumina methylation data.
Strip excessive probe-level data from MethyLumiSets
Variation-based Filtering of Features (CpG sites) in a MethyLumiSet or MethyLumiM object