Data frame describing loci on the 27 and 450k arrays.
The base class for storing Illumina Methylation data
Class "MethyLumiM": for Illumina Methylation microarray data using logRatios
Class '"MethyLumiQC"' for holding Illumina methylation QC data
Class '"MethyLumiSet"' for containing Illumina methylation data
Extract the Barcode and Position Information from Sentrix ID
Annotation-based Filtering of Features (CpG sites) in a MethyLumiSet or MethyLumiM object
Return a data.frame of AssayData name substitutions.
Class '"methylData"', superclass for MethyLumiSet and MethyLumiM
Load data from Illumina methylation platform
Example SAM format Illumina methylation dataset
Normalize a MethyLumiSet, accounting for dye bias
Methods for dealing with control data for Illumina methylation data.
Strip excessive probe-level data from MethyLumiSets
Variation-based Filtering of Features (CpG sites) in a MethyLumiSet or MethyLumiM object