methylumiR(filename = system.file("extdata/exampledata.samples.txt",     package = "methylumi"), qcfile = system.file("extdata/exampledata.controls.txt",     package = "methylumi"), sampleDescriptions = samps)

5H9, BA2, P24, GIG2, MIC3, MRP-1, BTCC-1, DRAP-27, TSPAN29
AAA, AD1, PN2, ABPP, APPI, CVAP, ABETA, CTFgamma
AAT4, FAA4, SMHC, SMMHC, MGC32963, MGC126726, DKFZp686D10126
AFGF, ECGF, FGFA, ECGFA, ECGFB, HBGF1, GLIO703, ECGF-beta, FGF-alpha
AGS, AHD, AWS, HJ1, CD339, JAGL1, MGC104644
APT1, CD95, FAS1, APO-1, FASTM, ALPS1A, TNFRSF6, Apo-1 Fas
ARF, MLM, p14, p16, p19, CMM2, INK4, MTS1, TP16, CDK4I, CDKN2, INK4a, p14ARF, p16INK4, p16INK4a
AT, ATK, BPK, XLA, IMD1, AGMX1, PSCTK1, MGC126261, MGC126262
AT1, AG2S, AT1B, AT2R1, HAT1R, AGTR1A, AGTR1B, AT2R1A, AT2R1B
B3T5, GLCT5, B3GalTx, B3GalT-V, beta3Gal-T5
BCL1, PRAD1, U21B31, D11S287E, cyclin D1
BEK, JWS, CEK3, CFD1, ECT1, KGFR, TK14, TK25, BFR-1, CD332, K-SAM
BIT, MFR, P84, SIRP, MYD-1, SHPS1, SIRPA, CD172A, SHPS-1, SIRPalpha, SIRPalpha2, SIRP-ALPHA-1
BL2, ST17, NECL2, TSLC1, IGSF4A, SYNCAM, sTSLC-1, synCAM1, DKFZp686F1789
BLT1, BLTR, P2Y7, GPR16, LTBR1, P2RY7, CMKRL1, LTB4R1
BM28, CCNL1, CDCL1, cdc19, D3S3194, MITOTIN, KIAA0030, MGC10606
BMR2, PPH1, BMPR3, BRK-3, T-ALK, BMPR-II
BPA, BP240, BPAG1, MACF2, CATX-15, KIAA0465, KIAA1470
BRG1, BAF190, SNF2L4, SNF2LB, hSNF2b, SNF2-BETA
CAK, DDR, NEP, PTK3, RTK6, TRKE, CD167, EDDR1, MCK10, NTRK4, PTK3A
CAR, CNC1, PKR1, TSE1, PRKAR1, MGC17251, DKFZp779L0468
CD, ACUG, BLAU, IBD1, NOD2, NOD2B, PSORAS1
CD75, SIAT1, ST6GalI, MGC48859, ST6Gal I
CDR, ETO, MTG8, MTG8b, AML1T1, ZMYND2, CBFA2T1, MGC2796
CEP52, RPL40, RPS27A, HUBCEP52, MGC57125
CF, MRP7, ABC35, ABCC7, TNR-CFTR, dJ760C5.1
CFND, CFNS, EFL3, EPLG2, Elk-L, LERK2, MGC8782
CHK, CTK, HYL, Lsk, HYLTK, HHYLTK, MGC1708, MGC2101, DKFZp434N1212
CKR5, CD195, CKR-5, CCCKR5, CMKBR5, CC-CKR-5
COT, EST, ESTF, TPL2, Tpl-2, c-COT, FLJ10486
COX1, COX3, PHS1, PCOX1, PGHS1, PTGHS, PGG/HS, PGHS-1
COX2, COX-2, PHS-2, PGG/HS, PGHS-2, hCox-2
CPER, CPE-R, CPETR, CPETR1, WBSCR8, hCPE-R
CSD, CDB1, CDG2, CSD1, CSD2, CSD3, LCD1, BIGH3, CDGG1
CT, KC, CGRP, CALC1, CGRP1, CGRP-I, MGC126648
CTAG, ESO1, CTAG1, LAGE-2, LAGE2B, NY-ESO-1
CYGF, GC-F, GUC2F, GUC2DL, RETGC-2, ROS-GC2
D4, GDIA2, GDID4, LYGDI, Ly-GDI, RAP1GN1
DG2, DSC3, CDHF2, DGII/III, DKFZp686I11137
DGS, TGA, CAFS, CTHM, DGCR, DORV, VCFS, TBX1C
DGU, UDG, UNG1, HIGM4, UNG15, DKFZp781L1143
DR5, CD262, KILLER, TRICK2, TRICKB, ZTNFR9, TRAILR2, TRICK2A, TRICK2B, TRAIL-R2, KILLER/DR5
DSS, HNPP, CMT1A, CMT1E, GAS-3, Sp110, MGC20769
EMA, PEM, PUM, MAM6, PEMT, CD227, H23AG, mucin
ER, ESR, Era, ESRA, NR3A1, major ORF, DKFZp686N23123
Erb, ESRB, 5p152, NR3A2, ER-BETA, ESR-BETA
ERK3, ERK6, SAPK3, PRKM12, SAPK-3, P38GAMMA
FA, FA1, FAA, FAH, FA-H, FACA, FANCH, MGC75158
FAAR, NUC1, NUCI, NR1C2, NUCII, PPARB, MGC3931, PPAR-beta
FN, CIG, MSF, FINC, LETS, DKFZp686H0342, DKFZp686I1370, DKFZp686F10164, DKFZp686O13149
FPF, p55, p60, TBP1, TNF-R, TNFAR, TNFR1, p55-R, CD120a, TNFR55, TNFR60, TNF-R-I, TNF-R55, MGC19588
FRE, FZRB, hFIZ, FRITZ, FRP-3, FRZB1, SFRP3, SRFP3, FRZB-1, FRZB-PEN
GAP, PKWS, RASA, CMAVM, RASGAP, p120GAP, DKFZp434N071
GGF, HGL, HRG, NDF, ARIA, GGF2, HRG1, HRGA, SMDF
GNRP, GRF1, CDC25, GRF55, CDC25L, H-GRF55
GNT1, UGT1, UDPGT, UGT1A, UGT1*1, HUG-BR1
H2, H3, H4, H5, CEK, FLG, FLT2, KAL2, BFGFR, C-FGR, CD331, N-SAM
H5, CDCREL, PNUTL1, CDCREL1, CDCREL-1, HCDCREL-1
HCP, HCPH, SHP1, SHP-1, HPTP1C, PTP-1C, SHP-1L, SH-PTP1
HD7, HDAC, HDRP, MITR, HDAC7, HDAC7B, HDAC9B, HDAC9FL, KIAA0744, DKFZp779K1053
HER3, ErbB-3, c-erbB3, erbB3-S, MDA-BF-1, MGC88033, c-erbB-3, p180-ErbB3, p45-sErbB3, p85-sErbB3
HET, ITM, BWR1A, IMPT1, TSSC5, ORCTL2, BWSCR1A, SLC22A1L, p45-BWR1A, DKFZp667A184
HID, KID, PPK, CX26, DFNA3, DFNB1, NSRD1
HIN1, HIN-1, LU105, UGRP2, PnSP-2, MGC87867
HLTF, ZBU1, HLTF1, RNF80, HIP116, SNF2L3, HIP116A
HP, ARHGAP7, STARD12, FLJ21120, p122-RhoGAP
IK1, LYF1, hIk-1, IKAROS, PRO0758, Hs.54452
IL-3, MCGF, MGC79398, MGC79399, MULTI-CSF
IN, LHR, MC56, MDU2, MDU3, MIC4, Pgp1, CDW44, MUTCH-I, ECMR-III, MGC10468
IP, IP2, FIP3, NEMO, FIP-3, Fip3p, IKK-gamma
IRAP, IL1F3, IL1RA, IL-1ra3, ICIL-1RA, MGC10430
JK, UT1, UTE, HUT11, RACH1, UT-B1, HsT1341
JNK2, JNK2A, JNK2B, PRKM9, JNK-55, JNK2BETA, p54aSAPK, JNK2ALPHA
JTK12, PDGFR, CD140B, PDGFR1, PDGF-R-beta
K60, NAF, GCP1, IL-8, LECT, LUCT, NAP1, 3-10C, CXCL8, GCP-1, LYNAP, MDNCF, MONAP, NAP-1, SCYB8, TSG-1, AMCF-I, b-ENAP
KBF1, EBP-1, MGC54151, NFKB-p50, NFKB-p105, NF-kappa-B, DKFZp686C01211
KD, AIS, TFM, DHTR, SBMA, NR3C4, SMAX1, HUMARA
KRAS1, KRAS2, RASK2, KI-RAS, C-K-RAS, K-RAS2A, K-RAS2B, K-RAS4A, K-RAS4B
KRP, MLCK, MLCK108, MLCK210, FLJ12216, DKFZp686I10125
LCA, CYGD, LCA1, CORD6, GUC2D, retGC, GUC1A4, RETGC-1, ROS-GC1
LQT, RWS, WRS, LQT1, ATFB1, KCNA8, KCNA9, Kv1.9, Kv7.1, KVLQT1
Men, ELL1, C19orf17, ELL_HUMAN, DKFZp434I1916
MIP1A, SCYA3, G0S19-1, LD78ALPHA, MIP-1-alpha
MOM1, PLA2, PLA2B, PLA2L, PLA2S, PLAS1, sPLA2
MRP5, SMRP, ABC33, MOATC, MOAT-C, pABC11, EST277145
MRX, MRX90, NEDLG, NE-Dlg, SAP102, KIAA1232
MRX, MXR, ABCP, BCRP, BMDP, MXR1, ABC15, BCRP1, CDw338, EST157481, MGC102821
MSF, MSF1, SINT1, PNUTL4, AF17q25, KIAA0991
MU, H-B, GST1, GTH4, GTM1, MU-1, GSTM1-1, MGC26563, GSTM1a-1a, GSTM1b-1b
NEU, NGL, HER2, TKR1, HER-2, c-erb B2, HER-2/neu
P21, CIP1, SDI1, WAF1, CAP20, CDKN1, MDA-6, p21CIP1
p52, p75, PAIP, DFS70, LEDGF, PSIP2, MGC74712
p75, TBPII, TNFBR, TNFR2, CD120b, TNFR80, TNF-R75, p75TNFR, TNF-R-II
PARP, PPOL, ADPRT, ADPRT1, PARP-1, pADPRT-1
PHS, ACLS, GCPS, PAPA, PAPB, PAP-A, PAPA1, PPDIV
PKB, PTK, CAKB, FAK2, PYK2, CADTK, FADK2, RAFTK
PTC, MTC1, HSCR1, MEN2A, MEN2B, RET51, CDHF12, RET-ELE1
RDT, INI1, SNF5, Snr1, BAF47, Sfh1p, hSNFS, SNF5L1
RK, p38, EXIP, Mxi2, CSBP1, CSBP2, CSPB1, PRKM14, PRKM15, SAPK2A, p38ALPHA
RS, RGS, ARP1, Brx1, IDG2, IGDS, IHG2, PTX2, RIEG, IGDS2, IRID2, Otlx2, RIEG1, MGC20144, MGC111022
RTS, RTT, PPMX, MRX16, MRX79, AUTSX3, DKFZp686A24160
S10, HSAS, MASA, MIC5, SPG1, CAML1, CD171, HSAS1, N-CAML1
SemA, SEMA5, SEMAA, semaV, LUCA-1, FLJ34863
SemD, SEMA1, SEMAD, SEMAL, coll-1, Hsema-I, SEMAIII, sema III
SMN, SM-D, RT-LI, HCERN3, SNRNP-N, SNURF-SNRPN
TESS, TESS-2, TESTIN, MGC1146, DKFZP586B2022
XL, AHO, GSA, GSP, POH, XL2, GPSA, NESP, GNAS1, PHP1A, PHP1B, GNASXL, NESP55, C20orf45, MGC33735, XLalphas, dJ309F20.1.1, dJ806M20.3.3