c(bibentry(bibtype = "Article", key = "minfi", title = "{Minfi: A flexible and comprehensive Bioconductor package for the analysis of Infinium DNA Methylation microarrays}", author = c( person(c("Martin", "J."), "Aryee"), person(c("Andrew", "E."), "Jaffe"), person("Hector", "Corrada-Bravo"), person("Christine", "Ladd-Acosta"), person(c("Andrew", "P."), "Feinberg"), person(c("Kasper", "D."), "Hansen"), person(c("Rafael", "A."), "Irizarry") ), year = 2014, journal = "Bioinformatics", volume = "30", number = "10", pages = "1363--1369", doi = "10.1093/bioinformatics/btu049", pubmed = "24478339", header = "The minfi package is described in:"), bibentry(bibtype = "Article", key = "SWAN", author = c(person(given = "Jovana", family = "Maksimovic"), person(given = "Lavinia", family = "Gordon"), person(given = "Alicia", family = "Oshlack")), title = "{SWAN: Subset quantile Within-Array Normalization for Illumina Infinium HumanMethylation450 BeadChips}", journal = "Genome Biology", year = "2012", volume = "13", number = "6", pages = "R44", doi = "10.1186/gb-2012-13-6-r44", pubmed = "22703947", header = "SWAN normalization is described in:"), bibentry(bibtype = "Article", key = "funnorm", author = c(person(given = "Jean-Philippe", family = "Fortin"), person(given = "Aurelie", family = "Labbe"), person(given = "Mathieu", family = "Lemire"), person(given = c("Brent", "W."), family = "Zanke"), person(given = c("Thomas", "J."), family = "Hudson"), person(given = c("Elana", "J."), family = "Fertig"), person(given = c("Celia", "M.T."), family = "Greenwood"), person(given = c("Kasper", "D."), family = "Hansen")), title = "Functional normalization of 450k methylation array data improves replication in large cancer studies", journal = "Genome Biology", year = "2014", volume = "15", number = "12", pages = "503", doi = "10.1186/s13059-014-0503-2", pubmed = "25517394", header = "Funnorm normalization is described in:"), bibentry(bibtype = "Article", key = "compartments", author = c(person(given = "Jean-Philippe", family = "Fortin"), person(given = c("Kasper", "D."), family = "Hansen")), title = "Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data", journal = "Genome Biology", year = "2015", volume = "16", pages = "180", doi = "10.1186/s13059-015-0741-y", pubmed = "26316348", header = "Reconstruction of A/B compartments is described in:") )