Package: minfi
Version: 1.16.1
Title: Analyze Illumina's 450k methylation arrays
Description: Tools for analyzing and visualizing Illumina's 450k array data.
Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
                    email = "kasperdanielhansen@gmail.com"),
             person("Martin", "Aryee", role = "aut"),
             person(c("Rafael", "A."), "Irizarry", role = "aut"),
             person(c("Andrew", "E."), "Jaffe", role = "ctb"),
             person("Jovana", "Maksimovic", role = "ctb"),
             person(c("E.", "Andres"), "Houseman", role = "ctb"),
             person("Jean-Philippe", "Fortin", role = "ctb"),
             person("Tim", "Triche", role = "ctb"),
             person("Shan", "Andrews", role = "ctb"))
Depends: methods, BiocGenerics (>= 0.15.3), Biobase (>= 2.17.8),
        lattice, GenomicRanges, SummarizedExperiment (>= 0.3.1),
        Biostrings, utils, bumphunter (>= 1.1.9)
Suggests: IlluminaHumanMethylation450kmanifest (>= 0.2.0),
        IlluminaHumanMethylation450kanno.ilmn12.hg19 (>= 0.2.1),
        minfiData (>= 0.4.1), FlowSorted.Blood.450k (>= 1.0.1), RUnit,
        digest, data.table
Imports: S4Vectors, GenomeInfoDb, IRanges, beanplot, RColorBrewer,
        nor1mix, siggenes, limma, preprocessCore, illuminaio,
        matrixStats, mclust, genefilter, nlme, reshape, MASS, quadprog,
        GEOquery, mixOmics
Collate: generics.R mset.R rset.R rgset.R gmset.R grset.R utils.R
        manifest.R anno.R minfiQC.R getSex.R dmr.R blocks.R plot.R
        plotBetasByType.R preprocess.R preprocessSwan.R
        preprocessQuantile.R preprocessNoob.R preprocessFunnorm.R qc.R
        read.450k.R read.manifest.R bumphunter.R estimateCellCounts.R
        gaphunter.R compartments.R
License: Artistic-2.0
URL: https://github.com/kasperdanielhansen/minfi
BugReports: https://github.com/kasperdanielhansen/minfi/issues
LazyData: yes
biocViews: DNAMethylation, Microarray, TwoChannel, DataImport,
        Preprocessing, QualityControl
NeedsCompilation: no
Packaged: 2016-02-25 03:00:59 UTC; biocbuild
Author: Kasper Daniel Hansen [cre, aut],
  Martin Aryee [aut],
  Rafael A. Irizarry [aut],
  Andrew E. Jaffe [ctb],
  Jovana Maksimovic [ctb],
  E. Andres Houseman [ctb],
  Jean-Philippe Fortin [ctb],
  Tim Triche [ctb],
  Shan Andrews [ctb]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen@gmail.com>
Built: R 3.2.3; ; 2016-10-26 17:55:00 UTC; unix