# literature_references

author: Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP
journal: Cell. 127:1193-1207(2006).
title:
Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans


author: Kato M, de Lencastre A, Pincus Z, Slack FJ
journal: Genome Biol. 10:R54(2009).
title:
Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development


author: Olsen PH, Ambros V
journal: Dev Biol. 216:671-680(1999).
title:
The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans  by blocking LIN-14 protein synthesis after the initiation of translation


title: A mammalian microRNA expression atlas based on small RNA library sequencing
journal: Cell. 129:1401-1414(2007).
author:
Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M


journal: Leukemia. 22:330-338(2008).
title:
Small RNAs analysis in CLL reveals a deregulation of miRNA expression and novel miRNA candidates of putative relevance in CLL pathogenesis

author:
Marton S, Garcia MR, Robello C, Persson H, Trajtenberg F, Pritsch O, Rovira C, Naya H, Dighiero G, Cayota A


author: Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V
journal: BMC Genomics. 11 Suppl 1:S6(2010).
title:
Analysis of deep sequencing microRNA expression profile from human embryonic stem cells derived mesenchymal stem cells reveals possible role of let-7 microRNA family in downstream targeting of hepatic nuclear factor 4 alpha


journal: PLoS One. 3:e3726(2008).
title:
MicroRNA expression patterns and function in endodermal differentiation of human  embryonic stem cells

author:
Tzur G, Levy A, Meiri E, Barad O, Spector Y, Bentwich Z, Mizrahi L, Katzenellenbogen M, Ben-Shushan E, Reubinoff BE, Galun E


journal: Proc Natl Acad Sci U S A. 99:15524-15529(2002).
title:
Frequent deletions and down-regulation of micro- RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia

author:
Calin GA, Dumitru CD, Shimizu M, Bichi R, Zupo S, Noch E, Aldler H, Rattan S, Keating M, Rai K, Rassenti L, Kipps T, Negrini M, Bullrich F, Croce CM


author: Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V
journal: Dev Biol. 259:9-18(2003).
title:
Temporal regulation of microRNA expression in Drosophila melanogaster mediated by hormonal signals and broad-Complex gene activity


title: The small RNA profile during Drosophila melanogaster development
journal: Dev Cell. 5:337-350(2003).
author:
Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T


author: Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC
journal: Genome Res. 17:1850-1864(2007).
title:
Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs


title: A pancreatic islet-specific microRNA regulates insulin secretion
journal: Nature. 432:226-230(2004).
author:
Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M


author: Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H
journal: Genes Dev. 20:1732-1743(2006).
title:
Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes


title: Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
journal: Genes Dev. 24:992-1009(2010).
author:
Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP


title: The expression profile of microRNAs in mouse embryos
journal: Nucleic Acids Res. 34:1765-1771(2006).
author:
Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I


title: MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
journal: Genome Res. 16:1276-1288(2006).
author:
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC


title: Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
journal: Nat Biotechnol. 26:941-946(2008).
author:
German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ


author: Park W, Li J, Song R, Messing J, Chen X
journal: Curr Biol. 12:1484-1495(2002).
title:
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana


author: Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR
journal: Proc Natl Acad Sci U S A. 102:5570-5575(2005).
title:
Kaposi's sarcoma-associated herpesvirus expresses an array of viral microRNAs in  latently infected cells


title: MicroRNAs: novel regulators involved in the pathogenesis of psoriasis?
journal: PLoS One. 2:e610(2007).
author:
Sonkoly E, Wei T, Janson PC, Saaf A, Lundeberg L, Tengvall-Linder M, Norstedt G, Alenius H, Homey B, Scheynius A, Stahle M, Pivarcsi A


title: Clustering and conservation patterns of human microRNAs
journal: Nucleic Acids Res. 33:2697-2706(2005).
author:
Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H


author: Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB
journal: RNA. 10:1309-1322(2004).
title:
Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification


author: Brennecke J, Hipfner DR, Stark A, Russell RB, Cohen SM
journal: Cell. 113:25-36(2003).
title:
bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila


author: Mattick JS, Gagen MJ
journal: Mol Biol Evol. 18:1611-1630(2001).
title:
The evolution of controlled multitasked gene networks: the role of introns and other noncoding RNAs in the development of complex organisms


author: Lee YS, Kim HK, Chung S, Kim KS, Dutta A
journal: J Biol Chem. 280:16635-16641(2005).
title:
Depletion of human micro-RNA miR-125b reveals that it is critical for the proliferation of differentiated cells but not for the down-regulation of putative targets during differentiation


author: Sathyan P, Golden HB, Miranda RC
journal: J Neurosci. 27:8546-8557(2007).
title:
Competing interactions between micro-RNAs determine neural progenitor survival and proliferation after ethanol exposure: evidence from an ex vivo model of the fetal cerebral cortical neuroepithelium


title: Microarray analysis of microRNA expression in the developing mammalian brain
journal: Genome Biol. 5:R68(2004).
author:
Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR


title: Identification of hundreds of conserved and nonconserved human microRNAs
journal: Nat Genet. 37:766-770(2005).
author:
Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z


title: Identification of clustered microRNAs using an ab initio prediction method
journal: BMC Bioinformatics. 6:267(2005).
author:
Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M


author: Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M
journal: Nature. 434:338-345(2005).
title:
Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals


title: Identification of virus-encoded microRNAs
journal: Science. 304:734-736(2004).
author:
Pfeffer S, Zavolan M, Grasser FA, Chien M, Russo JJ, Ju J, John B, Enright AJ, Marks D, Sander C, Tuschl T


journal: BMC Plant Biol. 8:123(2008).
title:
Identification of precursor transcripts for 6 novel miRNAs expands the diversity  on the genomic organisation and expression of miRNA genes in rice

author:
Lacombe S, Nagasaki H, Santi C, Duval D, Piegu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M


author: Li Y, Li W, Jin YX
journal: Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005).
title:
Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa


author: International Chicken Genome Sequencing Consortium
journal: Nature. 432:695-716(2004).
title:
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution


author: Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V
journal: J Virol. 82:4007-4015(2008).
title:
MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs


author: Griffiths-Jones S
journal: Unpublished (2009).
title:
	McBride D, Carre W, Law A, Clinton M	Unpublished.
1693	18463306	Conservation of small RNA pathways in platypus	Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ	Genome Res. 18:995-1004(2008).
1694	18511220	Identification of novel chicken microRNAs and analysis of their genomic organization	Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH	Gene. 418:34-40(2008).
1695	16750530	Identification of microRNAs from different tissues of chicken embryo and adult chicken	Xu H, Wang X, Du Z, Li N	FEBS Lett. 580:3610-3616(2006).
1696	18469162	A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach	Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML	Genome Res. 18:957-964(2008).
1697	20037610	Evolutionary flux of canonical microRNAs and mirtrons in Drosophila	Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC	Nat Genet. 42:6-9(2010).
1698	15937218	The developmental miRNA profiles of zebrafish as determined by small RNA cloning	Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T	Genes Dev. 19:1288-1293(2005).
1699	16736008	The zebrafish hoxDb cluster has been reduced to a single microRNA	Woltering JM, Durston AJ	Nat Genet. 38:601-602(2006).
1700	15919954	MicroRNA expression in zebrafish embryonic development	Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH	Science. 309:310-311(2005).
1701	16669754	MicroRNAS and their regulatory roles in plants	Jones-Rhoades MW, Bartel DP, Bartel B	Annu Rev Plant Biol. 57:19-53(2006).
1702	15642338	Stage-specific expression of microRNAs during Xenopus development	Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H	FEBS Lett. 579:318-324(2005).
1703	\N	Identifying microRNAs in plant genomes	Maher C, Timmermans M, Stein L, Ware D	Proc IEEE CSB :718-723(2004).
1704	19936050	A genome-wide characterization of microRNA genes in maize	Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D	PLoS Genet. 5:e1000716(2009).
1705	15916721	Identification and characterization of new plant microRNAs using EST analysis	Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA	Cell Res. 15:336-360(2005).
1706	14999285	microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity	Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC	Nature. 428:84-88(2004).
1707	15660154	Sorghum genome sequencing by methylation filtration	Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA	PLoS Biol. 3:e13(2005).
1708	15590942	Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags	Hubbard SJ, Grafham DV, Beattie KJ, Overton IM, McLaren SR, Croning MD, Boardman PE, Bonfield JK, Burnside J, Davies RM, Farrell ER, Francis MD, Griffiths-Jones S, Humphray SJ, Hyland C, Scott CE, Tang H, Taylor RG, Tickle C, Brown WR, Birney E, Rogers J,	Genome Res. 15:174-183(2005).
1709	15944709	c-Myc-regulated microRNAs modulate E2F1 expression	O'Donnell KA, Wentzel EA, Zeller KI, Dang CV, Mendell JT	Nature. 435:839-843(2005).
1710	15774722	MicroRNAs regulate brain morphogenesis in zebrafish	Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville S, Hammond SM, Bartel DP, Schier AF	Science. 308:833-838(2005).
1711	\N	Conservation and divergence of microRNA families in plants	Dezulian T, Palatnik JF, Huson DH, Weigel D	http://genomebiology.com/2005/6/11/p13 (2005).
1712	17543122	Computational and transcriptional evidence for microRNAs in the honey bee genome	Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG	Genome Biol. 8:R97(2007).
1713	17933784	Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium invasion	Winter F, Edaye S, Huttenhofer A, Brunel C	Nucleic Acids Res. 35:6953-6962(2007).
1714	18500992	Cloning, characterization, and expression of microRNAs from the Asian malaria mosquito, Anopheles stephensi	Mead EA, Tu Z	BMC Genomics. 9:244(2008).
1715	\N	


title: Identification of microRNAs of the herpesvirus family
journal: Nat Methods. 2:269-276(2005).
author:
Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA, van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G, Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T


journal: Proc Natl Acad Sci U S A. 105:4951-4956(2008).
title:
Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)

author:
Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ


journal: New Phytol. 184:85-98(2009).
title:
Cloning and characterization of small RNAs from Medicago truncatula reveals four  novel legume-specific microRNA families

author:
Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R


title: Prediction of novel miRNAs and associated target genes in Glycine max
journal: BMC Bioinformatics. 11 Suppl 1:S14(2010).
author:
Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G


title: The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
journal: Science. 313:1596-1604(2006).
author:
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm


author: Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL
journal: Plant Cell. 17:2186-2203(2005).
title:
Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are  absent from Arabidopsis


author: Yu Z, Raabe T, Hecht NB
journal: Biol Reprod. 73:427-433(2005).
title:
MicroRNA Mirn122a reduces expression of the posttranscriptionally regulated germ  cell transition protein 2 (Tnp2) messenger RNA (mRNA) by mRNA cleavage


title: Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
journal: BMC Genomics. 6:70(2005).
author:
Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L


author: Samols MA, Hu J, Skalsky RL, Renne R
journal: J Virol. 79:9301-9305(2005).
title:
Cloning and identification of a microRNA cluster within the latency-associated region of Kaposi's sarcoma-associated herpesvirus


author: Umbach JL, Cullen BR
journal: J Virol. 84:695-703(2010).
title:
In-depth analysis of Kaposi's sarcoma-associated herpesvirus microRNA expression  provides insights into the mammalian microRNA-processing machinery


title: Mouse microRNA profiles determined with a new and sensitive cloning method
journal: Nucleic Acids Res. 34:e115(2006).
author:
Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP, Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk RH, Cuppen E, Mano H


title: Cloning and expression of new microRNAs from zebrafish
journal: Nucleic Acids Res. 34:2558-2569(2006).
author:
Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH


title: The colorectal microRNAome
journal: Proc Natl Acad Sci U S A. 103:3687-3692(2006).
author:
Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE


author: Sullivan CS, Grundhoff AT, Tevethia S, Pipas JM, Ganem D
journal: Nature. 435:682-686(2005).
title:
SV40-encoded microRNAs regulate viral gene expression and reduce susceptibility to cytotoxic T cells


author: Grundhoff A, Sullivan CS, Ganem D
journal: RNA. 12:733-750(2006).
title:
A combined computational and microarray-based approach identifies novel microRNAs encoded by human gamma-herpesviruses


title: Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
journal: Genome Res. 16:1289-1298(2006).
author:
Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E


journal: Genome Res. 18:610-621(2008).
title:
Application of massively parallel sequencing to microRNA profiling and discovery  in human embryonic stem cells

author:
Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA


journal: BMC Med Genomics. 2:35(2009).
title:
Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing

author:
Nygaard S, Jacobsen A, Lindow M, Eriksen J, Balslev E, Flyger H, Tolstrup N, Moller S, Krogh A, Litman T


title: Hidden layers of human small RNAs
journal: BMC Genomics. 9:157(2008).
author:
Kawaji H, Nakamura M, Takahashi Y, Sandelin A, Katayama S, Fukuda S, Daub CO, Kai C, Kawai J, Yasuda J, Carninci P, Hayashizaki Y


title: MicroRNA expression signature of human sarcomas
journal: Oncogene. 27:2015-2026(2008).
author:
Subramanian S, Lui WO, Lee CH, Espinosa I, Nielsen TO, Heinrich MC, Corless CL, Fire AZ, van de Rijn M


journal: PLoS One. 4:e5311(2009).
title:
Repertoire of microRNAs in epithelial ovarian cancer as determined by next generation sequencing of small RNA cDNA libraries

author:
Wyman SK, Parkin RK, Mitchell PS, Fritz BR, O'Briant K, Godwin AK, Urban N, Drescher CW, Knudsen BS, Tewari M


author: Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M
journal: Mol Reprod Dev. 76:665-677(2009).
title:
Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach


author: Tang GQ, Maxwell ES
journal: Genome Res. 18:104-112(2008).
title:
Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation


author: Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y
journal: Insect Biochem Mol Biol. 38:1066-1071(2008).
title:
Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system


author: Sanan-Mishra N, Kumar V, Sopory SK, Mukherjee SK
journal: Mol Genet Genomics. 282:463-474(2009).
title:
Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses


title: Deep sequencing of chicken microRNAs
journal: BMC Genomics. 9:185(2008).
author:
Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW


title: Sequence conservation and differential expression of Marek's disease virus microRNAs
journal: J Virol. 82:12213-12220(2008).
author:
Morgan R, Anderson A, Bernberg E, Kamboj S, Huang E, Lagasse G, Isaacs G, Parcells M, Meyers BC, Green PJ, Burnside J


journal: PLoS One. 2:e219(2007).
title:
High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth  and death of MIRNA genes

author:
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC


title: High-resolution profiling and discovery of planarian small RNAs
journal: Proc Natl Acad Sci U S A. 106:11546-11551(2009).
author:
Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N


author: Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH
journal: FEBS Lett. 580:5111-5116(2006).
title:
Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development


author: Devor EJ, Samollow PB
journal: J Hered. 99:66-72(2008).
title:
In vitro and in silico annotation of conserved and nonconserved microRNAs in the  genome of the marsupial Monodelphis domestica


author: Younas M
journal: Unpublished.
title:
	Bonnet E	Unpublished (2007).
1791	18603441	Identification of micro-RNAs in cotton	Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S	Plant Physiol Biochem. 46:739-751(2008).
1792	\N	


author: Schafer A, Cai X, Bilello JP, Desrosiers RC, Cullen BR
journal: Virology. 364:21-27(2007).
title:
Cloning and analysis of microRNAs encoded by the primate gamma-herpesvirus rhesus monkey rhadinovirus


author: Gammell P, Barron N, Kumar N, Clynes M
journal: J Biotechnol. 130:213-218(2007).
title:
Initial identification of low temperature and culture stage induction of miRNA expression in suspension CHO-K1 cells


author: Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP
journal: PLoS One. 4:e7192(2009).
title:
Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors


title: Suppression of microRNA-silencing pathway by HIV-1 during virus replication
journal: Science. 315:1579-1582(2007).
author:
Triboulet R, Mari B, Lin YL, Chable-Bessia C, Bennasser Y, Lebrigand K, Cardinaud B, Maurin T, Barbry P, Baillat V, Reynes J, Corbeau P, Jeang KT, Benkirane M


author: Lu S, Sun YH, Amerson H, Chiang VL
journal: Plant J. 51:1077-1098(2007).
title:
MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development


author: Zhang L, Ding L, Cheung TH, Dong MQ, Chen J, Sewell AK, Liu X, Yates JR 3rd, Han M
journal: Mol Cell. 28:598-613(2007).
title:
Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2


author: Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Sewer A, Zavolan M, Nair V
journal: J Virol. 81:7164-7170(2007).
title:
Marek's disease virus type 2 (MDV-2)-encoded microRNAs show no sequence conservation with those encoded by MDV-1


journal: Virology. 388:128-136(2009).
title:
MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic  locations and are virus-specific

author:
Waidner LA, Morgan RW, Anderson AS, Bernberg EL, Kamboj S, Garcia M, Riblet SM, Ouyang M, Isaacs GK, Markis M, Meyers BC, Green PJ, Burnside J


author: Hinas A, Reimegard J, Wagner EG, Nellen W, Ambros VR, Soderbom F
journal: Nucleic Acids Res. 35:6714-6726(2007).
title:
The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway


journal: J Virol. 81:13771-13782(2007).
title:
Mouse cytomegalovirus microRNAs dominate the cellular small RNA profile during lytic infection and show features of posttranscriptional regulation

author:
Dolken L, Perot J, Cognat V, Alioua A, John M, Soutschek J, Ruzsics Z, Koszinowski U, Voinnet O, Pfeffer S


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Ramsingh G, Koboldt DC, Trissal M, Chiappinelli KB, Wylie T, Koul S, Chang LW, Nagarajan R, Fehniger TA, Goodfellow P, Magrini V, Wilson RK, Ding L, Ley TJ, Mardis ER, Link DC


author: Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ
journal: Proc Natl Acad Sci U S A. 107:19379-19383(2010).
title:
microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate


author: Li T, Li H, Zhang YX, Liu JY
journal: Nucleic Acids Res. 39:2821-2833(2011).
title:
Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)


title: The genome of Theobroma cacao
journal: Nat Genet. 43:101-108(2011).
author:
Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal


author: Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC
journal: Genome Res. 21:286-300(2011).
title:
Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans


title: Acoelomorph flatworms are deuterostomes related to Xenoturbella
journal: Nature. 470:255-258(2011).
author:
Philippe H, Brinkmann H, Copley RR, Moroz LL, Nakano H, Poustka AJ, Wallberg A, Peterson KJ, Telford MJ


journal: Genome Res. 21:203-215(2011).
title:
Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

author:
Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC


author: Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M
journal: Int J Parasitol. 41:439-448(2011).
title:
Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes


author: Surridge AK, Lopez-Gomollon S, Moxon S, Maroja LS, Rathjen T, Nadeau NJ, Dalmay T, Jiggins CD
journal: BMC Genomics. 12:62(2011).
title:
Characterisation and expression of microRNAs in developing wings of the neotropical butterfly Heliconius melpomene


author: Moore HC, Johnston M, Nicol SM, Bourdon JC, Thompson AM, Hutvagner G, Fuller-Pace FV
journal: RNA. 17:555-562(2011).
title:
An evolutionarily conserved, alternatively spliced, intron in the p68/DDX5 DEAD-box RNA helicase gene encodes a novel miRNA


author: Reshmi G, Chandra SS, Babu VJ, Babu PS, Santhi WS, Ramachandran S, Lakshmi S, Nair AS, Pillai MR
journal: Genomics. 97:333-340(2011).
title:
Identification and analysis of novel microRNAs from fragile sites of human cervical cancer: computational and experimental approach


author: Zhang J, Xu Y, Huan Q, Chong K
journal: BMC Genomics. 10:449(2009).
title:
Deep sequencing of Brachypodium small RNAs at the global genome level identifies  microRNAs involved in cold stress response


author: Chen CJ, Kincaid RP, Seo GJ, Bennett MD, Sullivan CS
journal: J Virol. 85:4487-4500(2011).
title:
Insights into Polyomaviridae microRNA function derived from study of the bandicoot papillomatosis carcinomatosis viruses


journal: Plant J. 67:232-246(2011).
title:
Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns

author:
Mohorianu I, Schwach F, Jing R, Lopez-Gomollon S, Moxon S, Szittya G, Sorefan K, Moulton V, Dalmay T


author: Wei LQ, Yan LF, Wang T
journal: Genome Biol. 12:R53(2011).
title:
Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa


author: Reese TA, Xia J, Johnson LS, Zhou X, Zhang W, Virgin HW
journal: J Virol. 84:10344-10353(2010).
title:
Identification of novel microRNA-like molecules generated from herpesvirus and host tRNA transcripts


title: Identification of novel soybean microRNAs involved in abiotic and biotic stresses
journal: BMC Genomics. 12:307(2011).
author:
Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R


title: MicroRNAs in the shoot apical meristem of soybean
journal: J Exp Bot. 62:2495-2506(2011).
author:
Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL


author: Zaragosi LE, Wdziekonski B, Brigand KL, Villageois P, Mari B, Waldmann R, Dani C, Barbry P
journal: Genome Biol. 12:R64(2011).
title:
Small RNA sequencing reveals miR-642a-3p as a novel adipocyte-specific microRNA and miR-30 as a key regulator of human adipogenesis


journal: Nat Cell Biol. 13:693-699(2011).
title:
Control of vertebrate multiciliogenesis by miR-449 through direct repression of the Delta/Notch pathway

author:
Marcet B, Chevalier B, Luxardi G, Coraux C, Zaragosi LE, Cibois M, Robbe-Sermesant K, Jolly T, Cardinaud B, Moreilhon C, Giovannini-Chami L, Nawrocki-Raby B, Birembaut P, Waldmann R, Kodjabachian L, Barbry P


author: Radwan O, Liu Y, Clough SJ
journal: Mol Plant Microbe Interact. 24:958-972(2011).
title:
Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome


author: Devers EA, Branscheid A, May P, Krajinski F
journal: Plant Physiol. 156:1990-2010(2011).
title:
Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis


author: Wang T, Chen L, Zhao M, Tian Q, Zhang WH
journal: BMC Genomics. 12:367(2011).
title:
Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing


author: Schotte D, Moqadam FA, Lange-Turenhout EA, Chen C, van Ijcken WF, Pieters R, den Boer ML
journal: Leukemia. 25:1389-1399(2011).
title:
Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia


title: Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain
journal: BMC Genomics. 12:277(2011).
author:
Gunaratne PH, Lin YC, Benham AL, Drnevich J, Coarfa C, Tennakoon JB, Creighton CJ, Kim JH, Milosavljevic A, Watson M, Griffiths-Jones S, Clayton DF


journal: Genome Res. 22:163-176(2012).
title:
High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis

author:
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN


journal: BMC Genomics. 12:328(2011).
title:
Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus

author:
Barrero RA, Keeble-Gagnere G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M


author: Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE
journal: Genome Res. 21:1462-1477(2011).
title:
Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles


author: Wong MM, Cannon CH, Wickneswari R
journal: BMC Genomics. 12:342(2011).
title:
Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing


author: Huang A, He L, Wang G
journal: BMC Genomics. 12:337(2011).
title:
Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis


author: Tandon M, Gallo A, Jang SI, Illei GG, Alevizos I
journal: Oral Dis. 18:127-131(2012).
title:
Deep sequencing of short RNAs reveals novel microRNAs in minor salivary glands of patients with Sjogren's syndrome


author: Wang Y, Itaya A, Zhong X, Wu Y, Zhang J, van der Knaap E, Olmstead R, Qi Y, Ding B
journal: Plant Cell. 23:3185-3203(2011).
title:
Function and evolution of a MicroRNA that regulates a Ca2+-ATPase and triggers the formation of phased small interfering RNAs in tomato reproductive growth


author: Au PC, Frankenberg S, Selwood L, Familari M
journal: Reproduction. 142:539-550(2011).
title:
A novel marsupial pri-miRNA transcript has a putative role in gamete maintenance  and defines a vertebrate miRNA cluster paralogous to the miR-15a/miR-16-1 cluster


author: Legrand S, Valot N, Nicole F, Moja S, Baudino S, Jullien F, Magnard JL, Caissard JC, Legendre L
journal: Gene. 450:55-62(2010).
title:
One-step identification of conserved miRNAs, their targets, potential transcription factors and effector genes of complete secondary metabolism pathways after 454 pyrosequencing of calyx cDNAs from the Labiate Salvia sclarea  L


author: Paul S, Kundu A, Pal A
journal: Plant Cell Tissue Organ Culture. 105:233-242(2011).
title:
Identification and validation of conserved microRNAs along with their differential expression in roots of Vigna unguiculata grown under salt stress


title: The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
journal: Science. 327:84-87(2010).
author:
Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT


journal: RNA. 18:472-484(2012).
title:
Deep-sequencing of endothelial cells exposed to hypoxia reveals the complexity of known and novel microRNAs

author:
Voellenkle C, Rooij Jv, Guffanti A, Brini E, Fasanaro P, Isaia E, Croft L, David M, Capogrossi MC, Moles A, Felsani A, Martelli F


author: Zhang B, Jin Z, Xie D
journal: J Integr Plant Biol. 54:73-86(2012).
title:
Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate  treatment by deep sequencing technology


author: Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
journal: PLoS Pathog. 7:e1002176(2011).
title:
Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors


journal: Genes Dev. 25:2540-2553(2011).
title:
MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

author:
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC


author: Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J
journal: Int J Biol Sci. 7:1016-1026(2011).
title:
Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle


journal: J Biotechnol. 153:62-75(2011).
title:
Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering

author:
Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Siederdissen CH, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J


author: Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ
journal: Plant Physiol. 158:813-823(2012).
title:
Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes


author: Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ
journal: Plant Cell. 23:4185-4207(2011).
title:
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage


journal: J Cell Biochem. 113:2098-2111(2012).
title:
Deep sequencing reveals predominant expression of miR-21 amongst the small non-coding RNAs in retinal microvascular endothelial cells

author:
Guduric-Fuchs J, O'Connor A, Cullen A, Harwood L, Medina RJ, O'Neill CL, Stitt AW, Curtis TM, Simpson DA


author: Kadri S, Hinman VF, Benos PV
journal: PLoS One. 6:e29217(2011).
title:
RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea star


author: Liu F, Peng W, Li Z, Li W, Li L, Pan J, Zhang S, Miao Y, Chen S, Su S
journal: Insect Mol Biol. 21:297-303(2012).
title:
Next-generation small RNA sequencing for microRNAs profiling in Apis mellifera: comparison between nurses and foragers


author: Lv S, Nie X, Wang L, Du X, Biradar SS, Jia X, Weining S
journal: Int J Mol Sci. 13:2973-2984(2012).
title:
Identification and Characterization of MicroRNAs from Barley (Hordeum vulgare L.) by High-Throughput Sequencing


title: The genome of Tetranychus urticae reveals herbivorous pest adaptations
journal: Nature. 479:487-492(2011).
author:
Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA


author: Yoo JK, Kim J, Choi SJ, Kim CH, Lee DR, Chung HM, Kim JK
journal: Biochem Biophys Res Commun. 415:258-262(2011).
title:
The hsa-miR-5739 modulates the endoglin network in endothelial cells derived from human embryonic stem cells


author: Yoo H, Yoo JK, Lee J, Lee DR, Ko JJ, Oh SH, Choo YK, Kim JK
journal: Biochem Biophys Res Commun. 415:567-572(2011).
title:
The hsa-miR-5787 represses cellular growth by targeting eukaryotic translation initiation factor 5 (eIF5) in fibroblasts


author: Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
journal: BMC Genomics. 13:4(2012).
title:
Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel


author: Tuddenham L, Jung JS, Chane-Woon-Ming B, Dolken L, Pfeffer S
journal: J Virol. 86:1638-1649(2012).
title:
Small RNA deep sequencing identifies microRNAs and other small noncoding RNAs from human herpesvirus 6B


author: Wu B, Li Y, Yan H, Ma Y, Luo H, Yuan L, Chen S, Lu S
journal: BMC Genomics. 13:15(2012).
title:
Comprehensive transcriptome analysis reveals novel genes involved in cardiac glycoside biosynthesis and mlncRNAs associated with secondary metabolism and stress response in Digitalis purpurea


author: Yoo JK, Kim J, Choi SJ, Noh HM, Kwon YD, Yoo H, Yi HS, Chung HM, Kim JK
journal: Stem Cells Dev. [Epub prior to print](2012).
title:
Discovery and Characterization of Novel MicroRNAs During Endothelial Differentiation of Human Embryonic Stem Cells


author: Mehrpooyan F, Othman RY, Harikrishna JA
journal: Tree Genetics and Genomes. (2012).
title:
Tissue and temporal expression of miR172 paralogs and the AP2-like target in Oil Palm (Elaeis guineensis Jacq).


author: Amiteye S, Corral JM, Sharbel TF
journal: African J Biotech. 10:(2011).
title:
Overview of the potential of microRNAs and their target gene detection for cassava (Manihot esculenta) improvement


author: Smith JL, Grey FE, Uhrlaub JL, Nikolich-Zugich J, Hirsch AJ
journal: J Virol. 86:5278-5287(2012).
title:
Induction of the cellular microRNA, Hs_154, by West Nile virus contributes to virus-mediated apoptosis through repression of antiapoptotic factors


author: Parsi S, Soltani BM, Hosseini E, Tousi SE, Mowla SJ
journal: PLoS One. 7:e35561(2012).
title:
Experimental verification of a predicted intronic microRNA in human NGFR gene with a potential pro-apoptotic function


journal: Planta. [Epub prior to print](2012).
title:
Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing

author:
Lertpanyasampatha M, Gao L, Kongsawadworakul P, Viboonjun U, Chrestin H, Liu R, Chen X, Narangajavana J


author: Meng F, Hackenberg M, Li Z, Yan J, Chen T
journal: PLoS One. 7:e34394(2012).
title:
Discovery of novel microRNAs in rat kidney using next generation sequencing and microarray validation


author: Clokie SJ, Lau P, Kim HH, Coon SL, Klein D
journal: J Biol Chem. [Epub prior to print](2012).
title:
Micro RNAs in the pineal gland: mir-483 regulates melatonin synthesis by targeting arylalkylamine N-Acetyltransferase


author: Yang KC, Ku YC, Lovett M, Nerbonne JM
journal: J Mol Cell Cardiol. 53:101-112(2012).
title:
Combined deep microRNA and mRNA sequencing identifies protective transcriptomal signature of enhanced PI3Kalpha signaling in cardiac hypertrophy


title: Evolution of coding and non-coding genes in HOX clusters of a marsupial
journal: BMC Genomics. 13:251(2012).
author:
Yu H, Lindsay J, Feng ZP, Frankenberg S, Hu Y, Carone D, Shaw G, Pask AJ, O'Neill R, Papenfuss AT, Renfree MB


author: Munson DJ, Burch AD
journal: Arch Virol. [Epub prior to print](2012).
title:
A novel miRNA produced during lytic HSV-1 infection is important for efficient replication in tissue culture


author: de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C
journal: Genomics. 98:96-111(2011).
title:
Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni


author: Gebelin V, Argout X, Engchuan W, Pitollat B, Duan C, Montoro P, Leclercq J
journal: BMC Plant Biol. 12:18(2012).
title:
Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets


author: Wu YQ, Chen DJ, He HB, Chen DS, Chen LL, Chen HC, Liu ZF
journal: PLoS One. 7:e30988(2012).
title:
Pseudorabies virus infected porcine epithelial cell line generates a diverse set  of host microRNAs and a special cluster of viral microRNAs


author: Fu Y, Shi Z, Wu M, Zhang J, Jia L, Chen X
journal: PLoS One. 6:e22957(2011).
title:
Identification and differential expression of microRNAs during metamorphosis of the Japanese flounder (Paralichthys olivaceus)


author: Li Y, Wang HY, Wan FC, Liu FJ, Liu J, Zhang N, Jin SH, Li JY
journal: Gene. 497:330-335(2012).
title:
Deep sequencing analysis of small non-coding RNAs reveals the diversity of microRNAs and piRNAs in the human epididymis


author: Bizuayehu TT, Lanes CF, Furmanek T, Karlsen BO, Fernandes JM, Johansen SD, Babiak I
journal: BMC Genomics. 13:11(2012).
title:
Differential expression patterns of conserved miRNAs and isomiRs during Atlantic  halibut development


title: Regulation of microRNA expression and abundance during lymphopoiesis
journal: Immunity. 32:828-839(2010).
author:
Kuchen S, Resch W, Yamane A, Kuo N, Li Z, Chakraborty T, Wei L, Laurence A, Yasuda T, Peng S, Hu-Li J, Lu K, Dubois W, Kitamura Y, Charles N, Sun HW, Muljo S, Schwartzberg PL, Paul WE, O'Shea J, Rajewsky K, Casellas R


author: Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH
journal: RNA Biol. 9:212-227(2012).
title:
Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in  early stages of chicken embryos implies a role in gastrulation


title: The genome of melon (Cucumis melo L.)
journal: PNAS [in press] (2012).
author:
Garcia-Masa J, Benjak A, Sanseverino W, Bourgeois M, Mir S, González VM, Hénaff E, Câmara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutiérrez S, Blanca J, Cañizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodríguez-Moreno L, Droege M, Du L, Alvarez-Tejado M,


author: Sattar S, Song Y, Anstead JA, Sunkar R, Thompson GA
journal: Mol Plant Microbe Interact. 25:839-848(2012).
title:
Cucumis melo microRNA expression profile during aphid herbivory in a resistant and susceptible interaction


title: Computational identification and analysis of novel sugarcane microRNAs
journal: BMC Genomics. 13:290(2012).
author:
Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC


# mirna_hairpin

mirna_id: cel-let-7
hairpin:
------uaca    gga             U              ---  aaua 
          cugu   uccggUGAGGUAG AGGUUGUAUAGUUu   gg    u
          ||||   ||||||||||||| ||||||||||||||   ||     
          gaca   aggcCAUUCCAUC UUUAACGUAUCAAG   cc    u
agcuucucaa    --g             U              Ugg  acca 


mirna_id: cel-lin-4
hairpin:
--a     ---   g    -uU   U    C    A       u   - u 
   ugcuu   ccg ccug   CCC GAGA CUCA GUGUGAg gua c a
   |||||   ||| ||||   ||| |||| |||| ||||||| ||| |  
   acgag   ggc ggac   GGG CUCU GGGU CACAcuu cgu g u
uag     uuu   a    CAU   C    C    C       -   a u 


mirna_id: cel-mir-1
hairpin:
aaagug    ua   ag           C      GC     -    au 
      accg  ccg  cugCAUACUUC UUACAU  CCAUA cuau  c
      ||||  |||  ||||||||||| ||||||  ||||| ||||  a
      uggu  ggc  gAUGUAUGAAG AAUGUA  GGUau ggua  u
---uga    gg   aa           A      -A     a    aa 


mirna_id: cel-mir-2
hairpin:
uaa     -au    aa   -         -   GGU       -uu -  a 
   acagu   acag  agc CAUCAAAGC GGU   UGAUGUG   g ca a
   |||||   ||||  ||| ||||||||| |||   |||||||   | || u
   uguca   uguc  uCG GUAGUUUCG CCG   ACUAUac   c gu u
---     cgu    cg   U         A   -AC       uuu a  a 


mirna_id: cel-mir-34
hairpin:
--------c    --a   c   -a A       -U   U     G   -  uau 
         ggac   aug ucg  g GGCAGUG  GGU AGCUG UUG ca   u
         ||||   ||| |||  | |||||||  ||| ||||| ||| ||    
         ccug   uac agc  C CCGUCAC  CCA UCGGC Aac gu   u
aaguuucua    cug   a   CC A       UU   -     -   a  ucc 


mirna_id: cel-mir-35
hairpin:
ucuc   uc                       U  A A      c   cc 
    gga  agaucgagccauUGCUGGUUUCU CC C GUGGUA uuu  a
    |||  ||||||||||||||||||||||| || | |||||| |||   
    ccu  ucuagcucggUGACGAUCAAAGG GG G CACUau aag  u
----   uu                       U  - C      c   au 


mirna_id: cel-mir-36
hairpin:
ca    u        a   C  C           CA   C     - au 
  ccgc gucgggga ccg GC AAUUUUCGCUU  GUG UAgac c  c
  |||| |||||||| ||| || |||||||||||  ||| ||||| |  c
  ggcg cagccccu gGU CG UUAAAAGUGGG  CAC aucug g  a
-a    -        g   A  C           -C   U     u aa 


mirna_id: cel-mir-37
hairpin:
uucu       - uu      g  UG     CCGU G     C    uucu 
    agaaacc c  ggacca UG  GGUGU    U CGGUG uaca    c
    ||||||| |  |||||| ||  |||||    | ||||| ||||     
    ucuuugg g  ccuggU AC  UCACA    G GCCAC augu    u
----       u cu      G  GU     -AGU G     U    cuaa 


mirna_id: cel-mir-38
hairpin:
     - -                    UC G        -ac  auc 
gugag c cagguccuguUCCGGUUUUU  C UGGUGAUA   gc   c
||||| | ||||||||||||||||||||  | ||||||||   ||    
uacuc g guccaggaUGAGGUCAAAAA  G GCCACUau   ug   a
     a u                    GA G        cuc  aaa 


mirna_id: cel-mir-39
hairpin:
u     g      c         -  U      A    g    u 
 auacc agagcc AGCUGAUUU CG CUUGGU AUAa cucg c
 ||||| |||||| ||||||||| || |||||| |||| ||||  
 ugugg ucucgG UCGACUAAA GU GGGCCA Uauu gagu a
c     -      U         U  -      C    a    u 


mirna_id: cel-mir-40
hairpin:
u     --        c   G          A  A     a   au 
 ccugu  ccgcaccu AGU GAUGUAUGCC UG UGAUA gau  c
 |||||  |||||||| ||| |||||||||| || ||||| |||  a
 ggaca  ggcguggA UCG CUACAUGUGG GC ACUau cua  g
u     ug        A   A          -  C     c   aa 


mirna_id: cel-mir-41
hairpin:
----  g   cag      u           -    CA       auacuuc 
    gg ucc   agaccu GGUGGUUUUUC UCUG  GUGAUAg       u
    || |||   |||||| ||||||||||| ||||  |||||||       a
    cc agg   ucuggA CCACUAAAAAG GGGC  CACUauc       a
uccu  g   ---      U           U    --       gcucaac 


mirna_id: cel-mir-42
hairpin:
----uucgc                 U   UUUU        ---uu  cuu 
         ggaccuuuGUGGGUGUU GCU    CGGUGAAG     gu   c
         ||||||||||||||||| |||    ||||||||     ||    
         ccuggAGACAUCUACAA UGG    GCCACUuc     cg   c
ggggaaaaa                 U   ----        uucuu  aug 


mirna_id: cel-mir-43
hairpin:
-ua ug    uagu           U    -     A     U   -  aaa 
   u  gcac    cgcccguGACA CAAG AAACU GUGAU AUG cc   c
   |  ||||    ||||||||||| |||| ||||| ||||| ||| ||   c
   a  cgug    gcgggCGCUGU GUUC UUUGA CACUA Uac gg   a
uug gu    ----           C    A     -     -   a  gac 


mirna_id: cel-mir-44
hairpin:
--     aau      u         -   GU        --   --g  a 
  gagaa   ggccaa CUGGAUGUG CUC  UGGUCAUA  gac   uc a
  |||||   |||||| ||||||||| |||  ||||||||  |||   || c
  cucuu   ccgguU GACUUACAC GAG  AUCAGUau  uug   ag a
au     cgu      C         A   --        ac   uca  c 


mirna_id: cel-mir-45
hairpin:
---caccau      c          -   GU        aua    ccac 
         gugcca gCUGGAUGUG CUC  UAGUCAUA   uccu    a
         |||||| |||||||||| |||  ||||||||   ||||     
         cgcggu CGACUUACAC GAG  AUCAGUau   agga    a
uacguaagc      U          A   --        --c    acga 


mirna_id: cel-mir-46
hairpin:
---cuga  ugaag           -CG     U      --u   -   c 
       gg     cugAAGAGAGC   UCUAU GACAGU   caa gac a
       ||     |||||||||||   ||||| ||||||   ||| ||| c
       cc     gACUUCUCUCG   AGGUA CUGUcg   guu cug g
uaacugg  uagua           CUG     -      ugu   g   a 


mirna_id: cel-mir-47
hairpin:
gaga   -   ugaaa           A    -AU       --c    ac 
    gcc gac     cugAAGAGAGC GUCU   UGACAGU   gguu  u
    ||| |||     ||||||||||| ||||   |||||||   ||||   
    cgg cug     gACUUCUCUCG CGGA   ACUGUca   cuaa  c
--cc   u   uagua           -    GGU       uuu    ag 


mirna_id: cel-mir-48
hairpin:
-----------      cc     cu    G      CA  A    C  au  a 
           aaacuc  gggaa  UGAG UAGGCU  GU GAUG GA  ug a
           ||||||  |||||  |||| ||||||  || |||| ||  || c
           uuugag  cccuu  GCUC AUCCGA  CA CUAC cu  au g
uuguuauggca      -a     AC    G      -C  C    A  cu  g 


mirna_id: cel-mir-49
hairpin:
uuuugaaaaa    a     C       G     AU     C  ag aau 
          gacc ccguc GCAGUUU UUGUG  GUGCU Ca  c   c
          |||| ||||| ||||||| |||||  ||||| ||  |    
          uugg gguAG CGUCGAA AGCAC  CACGA gu  g   a
---uuuaguc    a     A       G     --     A  cu agu 


mirna_id: cel-mir-50
hairpin:
------      -        c               UCU       g   uu 
      cugccc gccggccg UGAUAUGUCUGGUAU   UGGGUUu aac  c
      |||||| |||||||| |||||||||||||||   ||||||| |||  c
      gacggg cggccggC GCUAUGCAGAUUAUA   GCCCaag uug  a
guaaug      g        A               --C       -   cg 


mirna_id: cel-mir-51
hairpin:
-------- -   gaaaa u    c    C   G  C  A       -    ggu 
        g ucc     g ccgu UACC GUA CU CU UCCAUGU Uacu   c
        | |||     | |||| |||| ||| || || ||||||| ||||    
        c ggg     c ggcA GUGG CAU GA GA AGGUACa guga   a
ucgaagua u   augag -    C    A   G  C  -       a    aaa 


mirna_id: cel-mir-52
hairpin:
----       - --    a u C    GUA   A   UUC    C    - ag 
    uccaacu c  uaac g c ACCC   CAU UGU   CGUG Uuga c  c
    ||||||| |  |||| | | ||||   ||| |||   |||| |||| |   
    ggguuga g  auug c G UGGG   GUA ACA   GCAC aacu g  g
uucu       a uu    g C A    AAA   -   -UU    u    c aa 


mirna_id: cel-mir-53
hairpin:
-----      - --    a u C       CAU    UU     C    -  u 
     ccgauu c  ugac g c ACCCGUA   UUGU  CCGUG Uuga cu c
     |||||| |  |||| | | |||||||   ||||  ||||| |||| ||  
     ggcuga g  acug c G UGGGUAU   AACA  GGCAC aacu ga a
uuuaa      u uu    a C C       -AU    -C     u    c  a 


mirna_id: cel-mir-54
hairpin:
  g   cgc         A    -    -  CG   A A   uug    u 
gu agu   gcucugacu GGAU AUGA GA  ACG G ACA   cuuu u
|| |||   ||||||||| |||| |||| ||  ||| | |||   ||||  
ca ucg   cgggacuGA CCUA UACU CU  UGC C Ugu   gaaa u
  g   -au         G    A    U  AA   C A   uca    a 


mirna_id: cel-mir-55
hairpin:
agauuu    cu   u   a            C   -   U    - uuuu 
      ggaa  uaa ggg cuCGGCAGAAAC UAU CGG UAUA c    u
      ||||  ||| ||| |||||||||||| ||| ||| |||| |    g
      ccuu  auu ccc GAGUCGUCUUUG AUA GCC AUau g    g
--uugu    --   c   -            A   U   C    c uaua 


mirna_id: cel-mir-56
hairpin:
-ga  -  gu   u     UG     UC    U     UGU   -   ucc 
   gc ca  guc guucu  GCGGA  CAUU UGGGU   Acc uca   u
   || ||  ||| |||||  |||||  |||| |||||   ||| |||   a
   cg gu  cag caaGA  CGCCU  GUAA GCCCA   Ugg agu   a
cca  u  --   c     GU     UU    U     ---   c   uua 


mirna_id: cel-mir-57
hairpin:
----------a   aca  c    c    C     A  G    G     u   a 
           ucg   ug ucgu UACC UGUAG UC AGCU UGUGU uga a
           |||   || |||| |||| ||||| || |||| ||||| ||| c
           agc   ac agcA GUGG ACAUC AG UCGA GCAca acu a
aaguauuuaga   caa  a    C    A     -  A    -     u   a 


mirna_id: cel-mir-58
hairpin:
------     ucaua         C    CUU  C        a  -uc  c 
      gcucg     uccauUGCC UACU   CG AUCUCAuc cu   gu c
      |||||     ||||||||| ||||   || |||||||| ||   || a
      cgagu     aggUAACGG AUGA   GC UAGAGUag ga   ca a
ugagau     ----c         C    CUU  -        g  uac  u 


mirna_id: cel-mir-59
hairpin:
       cuagau  g            -      AA     caaaagu    g 
aguugau      au acaUCGUCCUGA AAACGA  CGGAA       ucaa a
|||||||      || |||||||||||| ||||||  |||||       ||||  
ucaacua      ua uGUAGUAGGACU UUUGCU  GCUuu       aguu u
       --aaau  g            A      AA     -------    a 


mirna_id: cel-mir-60
hairpin:
cucgaaaaccgcuugu               -    C    A      aca 
                ucuugAACUGGAAGA GUGC AUAA AUcaug   a
                ||||||||||||||| |||| |||| ||||||    
                agaACUUGAUCUUUU CACG UAUU Uagugc   a
----gcuaaagaguuc               A    -    A      aug 


mirna_id: cel-mir-61
hairpin:
uuccauu         -             U    GG  U    C  -  uc 
       aucgcugaa ccucgagaUGGGU ACGG  CU AGUC uu cc  c
       ||||||||| ||||||||||||| ||||  || |||| || ||  g
       uaguggcuu ggagcuCUACUCA UGCC  GA UCAG aa gg  u
-------         u             U    AA  -    U  c  ua 


mirna_id: cel-mir-62
hairpin:
--           cu      -c     c 
  gugaguuagau  cauauc  uuccg a
  |||||||||||  ||||||  ||||| a
  CAUUCGAUCUA  GUAUAG  aaggu a
GA           AU      Ua     a 


mirna_id: cel-mir-63
hairpin:
-ucaa    c   --   a             --    A     --c     agc 
     caag aga  cac auuUCUAACUCGU  CGGU GUCAu   guucu   u
     |||| |||  ||| |||||||||||||  |||| |||||   |||||    
     guuc ucu  gug uAAAGGUUGAGCG  GUCA CAGUA   cagga   g
aacga    a   ug   a             AA    -     Uca     aaa 


mirna_id: cel-mir-64
hairpin:
-cucccc    a -  c     a    A      AG   --       -   uuuuc 
       gcug c cu gccga UAUG CACUGA  CGU  UACCGAA ccg     c
       |||| | || ||||| |||| ||||||  |||  ||||||| |||      
       ugac g ga cggcu GUAC GUGACU  GCA  GUGgcuu ggu     c
uaugaau    c c  u     C    G      -A   AC       a   ccaca 


mirna_id: cel-mir-65
hairpin:
----        --uu      u    A     AA     A C   cac  u 
    auggagcc    cgccga UAUG CACUG  GCGUA C GAA   ca a
    ||||||||    |||||| |||| |||||  ||||| | |||   || u
    uaccucgg    gcggcu GUAC GUGAC  CGCAU G Cuu   gu u
aaau        uugc      C    C     -G     C U   aga  u 


mirna_id: cel-mir-66
hairpin:
------     aaa       aCA        A        G    gaauguu 
      ccaca   augccau   UGACACUG UUAGGGAU UGAu       a
      |||||   |||||||   |||||||| |||||||| ||||        
      ggugu   ugcggua   ACUGUGGC AAUCCUUA Acua       a
gauguu     --a       CAA        -        A    gcccuag 


mirna_id: cel-mir-67
hairpin:
gaucaaagauuc       CG   A     -CC      U     auuau 
            gucgauc  CUC UUCUG   GGUUGU AUGcu     c
            |||||||  ||| |||||   |||||| |||||      
            uagcuAG  GAG AAGAU   CCAACA Uacga     a
--uucaaaauuu       AU   A     CCU      C     auuag 


mirna_id: cel-mir-70
hairpin:
ucaaaaua       ga       C         U     A  A   c  au 
        aaacgau  aaacuau GAAAUACUA CGACG AU ACA uu  g
        |||||||  ||||||| ||||||||| ||||| || ||| ||   
        uuuguua  uuugaUA CUUUGUGGU GCUGC UA Ugu aa  a
------ua       ag       C         U     A  A   a  ga 


mirna_id: cel-mir-71
hairpin:
------   -  c   ga   a         U         G   u   a 
      guc ug ucu  acg UGAAAGACA GGGUAGUGA ACG cgg g
      ||| || |||  ||| ||||||||| ||||||||| ||| |||  
      cag gc agg  ugc GCUUUUUGU CUUAUCACU Ugc gcu c
aagguc   u  u   gc   C         -         A   u   c 


mirna_id: cel-mir-72
hairpin:
      ---      a  uA    AG    U   AU      augaucgc 
aggucc   cgucag gc  GGCA  AUGU GGC  AGCUGA        u
||||||   |||||| ||  ||||  |||| |||  ||||||        a
uccagg   guaguc cG  CCGU  UACA CCG  UCGAcu        u
      agu      a  CA    CU    -   CU      aucaacaa 


mirna_id: cel-mir-73
hairpin:
cagugagag   ---c  a            U  -     GA    CA  uauca 
         ucc    ac cacgacUGGACU CC AUAUC  GCCA  GC     a
         |||    || |||||||||||| || |||||  ||||  ||     c
         agg    ug guguUGACUUGA GG UGUAG  CGGU  cg     g
--------g   uauu  c            C  A     AA    --  uuuaa 


mirna_id: cel-mir-74
hairpin:
aaa     ca        uC     U    C    UC        cauc 
   ugguu  aaaaacgu  GGGCU CCAU UCUU  CCAGCcua    u
   |||||  ||||||||  ||||| |||| ||||  ||||||||     
   accaa  uuuuugcA  UCUGA GGUA AGAA  GGUcgggu    c
-aa     -c        CA     C    A    -C        ccaa 


mirna_id: cel-mir-75
hairpin:
uucuugu      -ga   a   C         CA     A    -   au 
       ugcuuu   aga uug AGUCGGUUG  AGCUU AAUA caa  c
       ||||||   ||| ||| |||||||||  ||||| |||| |||  c
       acgaga   ucu aAC UCGGCCAAC  UCGAA UUau guu  g
------g      aag   g   U         CA     A    u   aa 


mirna_id: cel-mir-76
hairpin:
-a    -a         U        -      U      -  uu     u 
  uuuc  gcuccuguc GGGCUUCA CAAUAG CGAAUA cc  aaauu c
  ||||  ||||||||| |||||||| |||||| |||||| ||  |||||  
  aaag  uggggguAG UCCGAAGU GUUGUU GCUUau gg  uuuaa a
ag    ag         U        A      -      a  --     a 


mirna_id: cel-mir-77
hairpin:
gcaucugc     - ---   c               CU    G     ac   c 
        caaac c   gcc guuugGAUGGUUGUG  CUGA GAAAU  gca a
        ||||| |   ||| |||||||||||||||  |||| |||||  ||| g
        guuug g   ugg uaaACCUGUCGAUAC  GACU CUUua  ugu a
--------     a aua   u               CG    A     -c   a 


mirna_id: cel-mir-78
hairpin:
aauaaaauauauug    au  ug -  -   -          -a   auuuu  a 
              uuuc  ag  u cc gua aaauaacuag  uuu     gu a
              ||||  ||  | || ||| ||||||||||  |||     ||  
              agag  uu  a gg CGU UUUGUUGGUC  GAG     ca a
--------------    cu  gu a  u   G          CG   GUuau  a 


mirna_id: cel-mir-79
hairpin:
ua     -  -uu u    u          UC     CA    --uu   u 
  guaga ca   c ccga CUUUGGUGAU  AGCUU  AUGA    ggc a
  ||||| ||   | |||| ||||||||||  |||||  ||||    ||| c
  caucu gu   g ggcU GAAACCAUUG  UCGAA  UAcu    uug a
--     a  ucu c    C          GA     -A    uucu   g 


mirna_id: cel-mir-80
hairpin:
auggaca   -gu   c  A         --     U  G      ----c g 
       cuc   ucg uc GCUUUCGAC  AUGAU CU AACaau     c c
       |||   ||| || |||||||||  ||||| || ||||||     |  
       gag   agu AG CGAAAGUUG  UACUA GA Uuguug     g a
--cuaua   acu   a  C         AU     -  G      uaccc a 


mirna_id: cel-mir-81
hairpin:
aucagu   au    -c       uC         C       G   ---   auc 
      gcc  cgug  ccaacag  GGUUUUCAC GUGAUCU AGA   gca   c
      |||  ||||  |||||||  ||||||||| ||||||| |||   |||   a
      cgg  gcau  gguuguU  UCGAAAGUG UACUAGA Ucu   cgu   a
-guuuu   --    cu       GA         C       G   uuu   aaa 


mirna_id: cel-mir-82
hairpin:
gaaaua     -uuuu      C       U U       A    a   ca 
      gguuc     agcaac GGUUUUC C GUGAUCU CAGA uga  g
      |||||     |||||| ||||||| | ||||||| |||| |||  c
      ucaag     uuguUG CCGAAAG G UACUAGA GUcu gcu  u
-----c     uauuu      A       U C       -    -   aa 


mirna_id: cel-mir-83
hairpin:
   a - -  u     cc              U  A  U  -  --  caa 
agc c c ac cggaa  ACUGAAUUUAUGUG GU CU GA cg  gc   c
||| | | || |||||  |||||||||||||| || || || ||  ||    
ucg g g ug gcuuu  UGACUUAAAUAUAC CA GA cu gc  cg   a
   a a c  c     AA              -  C  U  a  ua  aga 


mirna_id: cel-mir-84
hairpin:
gu    u     G    A  U        A   uguc 
  ggca cUGAG UAGU UG AAUAUUGU GAc    u
  |||| ||||| |||| || |||||||| |||     
  uugu GGCUC AUCA AC UUGUAACA cug    a
uc    C     A    -  U        C   uaau 


mirna_id: cel-mir-85
hairpin:
uau       uggcg       C           -  G    A     ---   u 
   agaauuu     ucggagc CGAUUUUUCAA UA UUUG AACca   gug a
   |||||||     ||||||| ||||||||||| || |||| |||||   |||  
   ucuuaag     agucuCG GCUGAAAAGUU AU AAAC Uuggu   uac c
-au       -uaaa       U           U  G    A     aaa   a 


mirna_id: cel-mir-86
hairpin:
---      -c  g   -           G  UU   A   U     a gu 
   cguguc  ac ccg ucUAAGUGAAU CU  GCC CAG Cuucg u  u
   ||||||  || ||| ||||||||||| ||  ||| ||| ||||| |  c
   gcacag  ug ggc GGAUUCGCUUA GA  CGG GUC gaagu a  u
acg      uu  a   C           -  CU   -   c     a ag 


mirna_id: cel-mir-87
hairpin:
-   u   cca      -       U     C U    A   -  -   uc 
 ggu gug   uccggc CGCCUGA ACUUU G CUCA CCU cg cug  a
 ||| |||   |||||| ||||||| ||||| | |||| ||| || |||   
 cca cac   aggcCG GUGGACU UGAAA C GAGU Gga gc ggu  g
c   -   --a      U       U     - -    -   u  u   ua 


mirna_id: cel-mir-90
hairpin:
g    -   u      C   U     -    G        -  a   cuc 
 ggcg cca uucgag GGC UUCAA CGAC AUAUCAAC cg caa   a
 |||| ||| |||||| ||| ||||| |||| |||||||| || |||   c
 ccgu ggu aaguUC CCG AAGUU GUUG UAUAGUug gc guu   a
a    a   u      C   U     U    -        u  -   uuc 


mirna_id: hsa-let-7a-1
hairpin:
     U   GU                uuagggucacac 
uggga GAG  AGUAGGUUGUAUAGUU            c
||||| |||  ||||||||||||||||            c
aucCU UUC  UCAUCUAACAUAUCaa            a
     -   UG                uagagggucacc 


mirna_id: hsa-let-7a-2
hairpin:
   uU   G   U             uagaa ua a 
agg  GAG UAG AGGUUGUAUAGUU     u  c u
|||  ||| ||| |||||||||||||     |  | c
uCC  UUC AUC UCCGACAUGUCaa     a  g a
   -U   G   C             --uag gg a 


mirna_id: hsa-let-7a-3
hairpin:
   U   GU                ---------        
ggg GAG  AGUAGGUUGUAUAGUU         uggggcu 
||| |||  ||||||||||||||||         |||||| c
ucC UUC  UCAUCUAACAUAUCaa         gucccgu 
   U   UG                uaggguauc        


mirna_id: hsa-let-7b
hairpin:
     U                     ucagggcagugaug 
cgggg GAGGUAGUAGGUUGUGUGGUU              u
||||| |||||||||||||||||||||               
guCCC UUCCGUCAUCCAACAUAUCaa              u
     -                     uagaaggcuccccg 


mirna_id: hsa-let-7c
hairpin:
  a      uU   G   U             ua  g ua a 
gc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  c c
|| ||||||  ||| ||| |||||||||||||  || |  | c
cg agguuc  uuc auc uccaacaugucaa  uu a  g c
  -      cu   g   u             --  g gg u 


mirna_id: hsa-let-7d
hairpin:
       A              C      uuagggcagggauu 
ccuagga GAGGUAGUAGGUUG AUAGUU              u
||||||| |||||||||||||| ||||||               
ggauUCU UUCCGUCGUCCAGC UAUCaa              u
       -              A      uggaggaacacccg 


mirna_id: hsa-let-7e
hairpin:
  c   cU   G                U  ----gga  a 
cc ggg  GAG UAGGAGGUUGUAUAGU ga       gg c
|| |||  ||| |||||||||||||||| ||       ||  
gg ccC  UUC AUCCUCCGGCAUAUCa cu       cc a
  a   CU   G                -  agaggaa  c 


mirna_id: hsa-let-7f-1
hairpin:
    a UG                      ---------       u 
ucag g  AGGUAGUAGAUUGUAUAGUUgu         gggguag g
|||| |  ||||||||||||||||||||||         ||||||| a
aguC C  UCCGUUAUCUAACAUAUCaaua         ucccauu u
    - CU                      gaggacuug       u 


mirna_id: hsa-let-7f-2
hairpin:
u      U   GU                uuagggucauac 
 guggga GAG  AGUAGAUUGUAUAGUU            c
 |||||| |||  ||||||||||||||||             
 cacCCU UUC  UCAUCUGACAUAUCaa            c
g      -   UG                uagagguucuac 


mirna_id: hsa-mir-15a
hairpin:
     gaguaaa UA        UA          ga  u 
ccuug       g  GCAGCACA  AUGGUUUGUG  uu u
|||||       |  ||||||||  ||||||||||  || g
ggaac       C  CGUCGUGU  UACCGGACgu  aa a
     auaaaaA UC        UA          gg  a 


mirna_id: hsa-mir-16-1
hairpin:
      ag   c          -  A        C u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
caguug  aug AGUCGUCGUG CA UUAUGACC c auu    u
      ga   a          U  A        u u   aaaa 


mirna_id: hsa-mir-17
hairpin:
    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacG   UUCACGGA GU ACGUC Auc ac  g
    gg       AUG        A  G     -   u  gu 


mirna_id: hsa-mir-18a
hairpin:
u   cU    U   UC   U    A   -  aa u 
 guu  AAGG GCA  UAG GCAG UAG ug  g a
 |||  |||| |||  ||| |||| ||| ||  | g
 cGG  UUCC CGU  AUC CGUC Auc ac  u a
a   UC    U   GA   C    -   u  ga u 


mirna_id: hsa-mir-19a
hairpin:
    u  u                 --      ---    ag 
gcag cc cuguuAGUUUUGCAUAG  UUGCAC   UACA  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 


mirna_id: hsa-mir-19b-1
hairpin:
     uu                 -  -      UC    ugugu 
cacug  cuaugguuAGUUUUGCA GG UUUGCA  CAGC     g
|||||  ||||||||||||||||| || ||||||  ||||     a
gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
     --                 A  U      --    ucuua 


mirna_id: hsa-mir-19b-2
hairpin:
      cuac                 -  -       UUCA       u 
acauug    uuacaauuAGUUUUGCA GG UUUGCAU    gcguaua a
||||||    ||||||||||||||||| || |||||||    |||||||  
uguaau    aguguuAGUCAAAACGU CC AAACGUG    uguauau u
      ----                 A  U       Ucgg       g 


mirna_id: hsa-mir-20a
hairpin:
    c   -A                 G   -  uu 
guag acU  AAGUGCUUAUAGUGCAG UAG ug  u
|||| |||  ||||||||||||||||| ||| ||   
cguc uGA  UUCACGAGUAUUACGUC Auc au  a
    a   AA                 -   u  ug 


mirna_id: hsa-mir-21
hairpin:
u     gU        A     A     A    u a 
 gucgg  AGCUUAUC GACUG UGUUG cugu g a
 |||||  |||||||| ||||| ||||| |||| | u
 caguc  UCGGGUAG CUGAC ACAAC ggua c c
a     UG        -     C     -    - u 


mirna_id: hsa-mir-22
hairpin:
   u   cc               -     A      u  ccu 
ggc gag  gcaguAGUUCUUCAG UGGCA GCUUUA gu   g
||| |||  ||||||||||||||| ||||| |||||| ||   a
ccg cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
   u   -c               G     -      -  acc 


mirna_id: hsa-mir-23a
hairpin:
  c   c     -       G    G      cuuc 
gg cgg uGGGG UUCCUGG GAUG GAUUUg    c
|| ||| ||||| ||||||| |||| ||||||     
cc gcc aCCUU AGGGACC UUAC CUAaac    u
  a   a     U       G    A      acug 


mirna_id: hsa-mir-24-1
hairpin:
    g  G   A         UA     ucuca 
cucc gU CCU CUGAGCUGA  UCAGU     u
|||| || ||| |||||||||  |||||     u
gagG CA GGA GACUUGACU  GGUca     u
    A  A   C         -C     cacau 


mirna_id: hsa-mir-24-2
hairpin:
     cc   cg   -CU         --AA      u 
cucug  ucc  UGC   ACUGAGCUG    ACACAG u
|||||  |||  |||   |||||||||    |||||| g
ggGAC  AGG  ACG   UGACUCGGU    uguguu g
     -A   --   ACU         caca      u 


mirna_id: hsa-mir-25
hairpin:
    a ug   ag    G     UU G     U   --  ac 
ggcc g  uug  AGGC GAGAC  G GCAAU Gcu  gg  g
|||| |  |||  |||| |||||  | ||||| |||  ||  c
ccgg c  gac  UCUG CUCUG  C CGUUA Cgg  cc  u
    c gu   AG    G     UU A     -   gu  cg 


mirna_id: hsa-mir-26a-1
hairpin:
   g      U         C          --g  ca 
gug ccucgU CAAGUAAUC AGGAUAGGCU   ug  g
||| |||||| ||||||||| ||||||||||   ||  g
cgc gggGCA GUUCAUUGG UCUUAUCCgg   ac  u
   a      C         U          gua  cc 


mirna_id: hsa-mir-26b
hairpin:
    ga   -   U        UC           u ug 
ccgg  ccc agU CAAGUAAU  AGGAUAGGUug g  c
||||  ||| ||| ||||||||  ||||||||||| |   
ggcc  ggg UCG GUUCAUUA  UCUUGUCCgac c  u
    ag   C   -        CC           - ug 


mirna_id: hsa-mir-27a
hairpin:
   a  a  A         UG  U       g  u cac 
cug gg gc GGGCUUAGC  CU GUGAGCA gg c   a
||| || || |||||||||  || ||||||| || |    
gac cc CG CUUGAAUCG  GA CACUUgu cu g   c
   c  c  C         GU  -       g  - aac 


mirna_id: hsa-mir-28
hairpin:
   c         A                U  ----     cc 
ggu cuugcccuc AGGAGCUCACAGUCUA UG    AGuua  u
||| ||||||||| |||||||||||||||| ||    |||||   
uca ggacgggAG UCCUCGAGUGUUAGAU AC    ucagu  u
   c         G                C  ccuu     cu 


mirna_id: hsa-mir-29a
hairpin:
            UUU       C    ucaa 
augACUGAUUUC   UGGUGUU AGag    u
||||||||||||   ||||||| ||||    a
uAUUGGCUAAAG   ACCACGA Ucuu    u
            UCU       -    uuaa 


mirna_id: hsa-mir-30a
hairpin:
   a            UC           -----   a 
gcg cUGUAAACAUCC  GACUGGAAGcu     gug a
||| ||||||||||||  |||||||||||     |||  
cgu GACGUUUGUAGG  CUGACUUUCgg     cac g
   C            --           guaga   c 


mirna_id: hsa-mir-31
hairpin:
      gA     G   C         -U   gaa 
ggagag  GGCAA AUG UGGCAUAGC  guu   c
||||||  ||||| ||| |||||||||  |||    
ccuuuc  CCGUU UAC ACCGUAUCG  caa   u
      UA     A   A         Uc   ggg 


mirna_id: hsa-mir-32
hairpin:
        UG     U            - uu  c 
ggagaUAU  CACAU ACUAAGUUGCAu g  gu a
||||||||  ||||| |||||||||||| |  ||  
cuUUUAUA  GUGUG UGAUUUAACgua c  cg c
        GU     -            a uc  g 


mirna_id: hsa-mir-33a
hairpin:
              A UU          uucu  u 
cugugGUGCAUUGU G  GCAUUGCAug    gg g
|||||||||||||| |  ||||||||||    || g
gaCACUACGUGACA C  UGUAACguac    cc u
              C UU          ----  a 


mirna_id: hsa-mir-92a-1
hairpin:
---cu   uac            C   U           uu 
     uuc   acAGGUUGGGAU GGU GCAAUGCUgug  u
     |||   |||||||||||| ||| |||||||||||   
     gag   UGUCCGGCCCUG UCA CGUUAUgguau  c
gguuu   --u            U   -           gu 


mirna_id: hsa-mir-92a-2
hairpin:
  a   c     G     UU  U   U     -      
uc ucc uGGGU GGGAU  GU GCA UACuu guguu 
|| ||| ||||| |||||  || ||| ||||| |||| c
ag agg GUCCG CCCUG  CA CGU AUgaa uauau 
  a   U     G     UU  -   U     a      


mirna_id: hsa-mir-93
hairpin:
          -CA       -     U    G   ug  au 
cugggggcuc   AAGUGCU GUUCG GCAG UAG  ug  u
||||||||||   ||||||| ||||| |||| |||  ||   
ggcccccgaG   UUCACGA CGAGU CGUC Auc  ac  a
          CCC       U     -    -   ca  cc 


mirna_id: hsa-mir-95
hairpin:
a   c      ca          gu         -   aa 
 aca aguggg  cucaauaaau  cuguugaau uga  u
 ||| ||||||  ||||||||||  ||||||||| |||   
 ugu ucaccc  GAGUUAUUUA  GGCAACUUa auu  g
g   c      AC          UG         c   gc 


mirna_id: hsa-mir-96
hairpin:
ugg  g  U        A      UU      ---   uc 
   cc au UUGGCACU GCACAU  UUGCUu   gug  u
   || || |||||||| ||||||  ||||||   |||   
   gg UA AACCGUGA CGUGUA  AAcgag   cgc  c
aaa  G  U        -      CU      ucu   cu 


mirna_id: hsa-mir-98
hairpin:
a    uc    -          U                 U    ---------      aggg 
 ggau  ugcu caugccaggg GAGGUAGUAAGUUGUAU GUUg         uggggu    a
 ||||  |||| |||||||||| ||||||||||||||||| ||||         ||||||    u
 cuua  acgg gugugguCCC UUUCAUCAUUCAACAUA Caau         accccg    a
a    -u    u          -                 U    agaagauua      gauu 


mirna_id: hsa-mir-99a
hairpin:
cc          A         UC   U      g  aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUG ug   u
  |||||||||| |||||||||  ||| |||||| ||    
  gugacuguGU UGGGUAUCU  GCU GAACac gc   g
gu          C         UC   C      -  cag 


mirna_id: hsa-mir-100
hairpin:
    -uu c    A   CG     C   A      - uau 
ccug   g caca ACC  UAGAU CGA CUUGUG g   u
||||   | |||| |||  ||||| ||| |||||| |    
ggau   c guGU UGG  AUCUA GUU GAACac c   a
    ugu u    A   AU     U   C      g cug 


mirna_id: hsa-mir-101-1
hairpin:
u   cuggc                  A    gucua 
 gcc     uCAGUUAUCACAGUGCUG UGCU     u
 |||     |||||||||||||||||| ||||      
 cgg     AGUCAAUAGUGUCAUGAC AUgg     u
a   uaggA                  -    aaauc 


mirna_id: hsa-mir-29b-1
hairpin:
-         -          U      GU      uuaaa 
 cuucaggaa GCUGGUUUCA AUGGUG  UUAGAu     u
 ||||||||| |||||||||| ||||||  ||||||     a
 gggguucUU UGACUAAAGU UACCAC  GAUcug     g
g         G          U      --      uuagu 


mirna_id: hsa-mir-29b-2
hairpin:
         -          C      G  U    uuuucc 
cuucuggaa gCUGGUUUCA AUGGUG CU AGau      a
||||||||| |||||||||| |||||| || ||||       
gaggauuUU UGACUAAAGU UACCAC GA Ucua      u
         G          U      -  -    uguuuc 


mirna_id: hsa-mir-103a-2
hairpin:
uu  g      --   U  U           ----    ua 
  gu cuuucA  GCU CU UACAGUGCUGC    CUUG  g
  || ||||||  ||| || |||||||||||    ||||  c
  ca gaaAGU  CGG GA AUGUUACGACG    ggac  a
ac  a      AU   -  C           Aacu    uu 


mirna_id: hsa-mir-103a-1
hairpin:
uac    c  --    u  u           c   u g a 
   ugcc uc  ggcu cu uacagugcugc uug u c u
   |||| ||  |||| || ||||||||||| ||| | |  
   acgg AG  UCGG GA AUGUUACGACG Aac a g a
guu    a  UA    -  C           -   u g u 


mirna_id: hsa-mir-105-1
hairpin:
ugu         U  A          UC        g ug 
   gcaucgugg CA AUGCUCAGAC  CUGUGGUg c  c
   ||||||||| || ||||||||||  |||||||| |  u
   uguggcAUC GU UACGAGUUUG  GGCAccac g  c
auc         -  G          UA        - ua 


mirna_id: hsa-mir-105-2
hairpin:
ugu         U  A          UC        g ug 
   gcaucgugg CA AUGCUCAGAC  CUGUGGUg c  c
   ||||||||| || ||||||||||  |||||||| |  u
   ugugguAUC GU UACGAGUUUG  GGCAccac g  u
auc         -  G          UA        - ua 


mirna_id: hsa-mir-106a
hairpin:
  u   cc      -           G     G   c  u 
cc ugg  auguAA AAGUGCUUACA UGCAG UAG uu u
|| |||  |||||| ||||||||||| ||||| ||| || u
gg acc  uaCAUU UUCACGAAUGU ACGUC auc ag g
  u   au      C           A     -   u  a 


mirna_id: hsa-mir-107
hairpin:
c   c      --c    u  u           c   u   a 
 ucu ugcuuu   agcu cu uacaguguugc uug ggc u
 ||| ||||||   |||| || ||||||||||| ||| ||| g
 aga acgaaA   UCGG GA AUGUUACGACG Aac uug g
-   c      CUA    -  C           -   -   a 


mirna_id: hsa-mir-16-2
hairpin:
  uc    cU         UA        C  ag   aau 
gu  cacu  AGCAGCACG  AAUAUUGG Gu  uga   a
||  ||||  |||||||||  |||||||| ||  |||    
ca  gugA  UCGUCGUGU  UUAUAACC ca  auu   u
  gu    UU         CA        a  -a   aua 


mirna_id: dme-mir-1
hairpin:
uuca   uuu  --ga            C        A   -   au 
    gcc   ga    guuCCAUGCUUC UUGCAUUC AUA guu  a
    |||   ||    |||||||||||| |||||||| ||| |||  u
    cgg   cu    cGAGGUAUGAAG AAUGUAAG Uau cga  u
-gag   --u  aaag            A        G   a   ac 


mirna_id: dme-mir-2a-1
hairpin:
         -      -         A    auuuc   u 
gcugggCUC UCAAAG UGGUUGUGA AUGc     cgc u
||||||||| |||||| ||||||||| ||||     ||| u
cgauuCGAG AGUUUC ACCGACACU Uacg     gcg g
         U      G         A    -----   c 


mirna_id: dme-mir-2a-2
hairpin:
    a   C        --             - aua 
aucu agC UCAUCAAG  UGGUUGUGAUAug g   c
|||| ||| ||||||||  ||||||||||||| |    
uagg uCG AGUAGUUU  ACCGACACUAUac c   c
    a   -        CG             g aac 


mirna_id: dme-mir-2b-1
hairpin:
  u    uG         -    A    ----C      u 
cu caac  UCUUCAAAG UGGC GUGA     AUGuug c
|| ||||  ||||||||| |||| ||||     ||||||  
gg guug  AGGAGUUUC ACCG CACU     uauaac a
  c    CG         G    A    AUacu      a 


mirna_id: dme-mir-2b-2
hairpin:
       a          -         A   --uuu  cuu 
uuguguc UUCUUCAAAG UGGUUGUGA AUG     gc   u
||||||| |||||||||| ||||||||| |||     ||    
agcgcag GAGGAGUUUC ACCGACACU Uac     cg   u
       C          G         A   uuauc  uau 


mirna_id: dme-mir-3
hairpin:
    c         UC    G    U    uuc 
gauc ugGGAUGCA  UUGU CAGU AUGu   a
|||| |||||||||  |||| |||| ||||   a
cuag ACUCUGUGU  AACG GUCA Uaca   u
    a         GA    G    C    cuc 


mirna_id: dme-mir-4
hairpin:
 ug    u gu   UU    C   C   CUUAG      u 
u  caau a  uuC  UGGU GUC AGC     GUGAuu u
|  |||| |  |||  |||| ||| |||     |||||| u
g  guug u  aAG  ACCA CAG UCG     UAcugg c
 gu    c ug   UU    A   A   --AAA      c 


mirna_id: dme-mir-5
hairpin:
---gcua       C               aguug 
       AAAGGAA GAUCGUUGUGAUAUG     u
       ||||||| |||||||||||||||     u
       UUUCCUU UUAGUGACACUAUac     u
cgcaAUA       -               aaucc 


mirna_id: dme-mir-6-1
hairpin:
-uuuaaug             UG     C    ag uaau 
        uagAGGGAAUAGU  CUGUG UGUA  u    a
        |||||||||||||  ||||| ||||  |    u
        gUUUUUCUUGUCG  GACAC AUau  a    a
aaauccau             GU     U    cu uacc 


mirna_id: dme-mir-6-2
hairpin:
     c        UU UG   C       u  -  g 
uaacc aAGGGAAC  C  CUG UGAUAUA ua uu a
||||| ||||||||  |  ||| ||||||| || ||  
guugg UUUUCUUG  G  GAC ACUAUau au aa a
     U        UC GU   -       c  c  a 


mirna_id: dme-mir-6-3
hairpin:
    a             UG   A        u   aaa 
caaa agaAGGGAACGGU  CUG UGAUGUAg uug   c
|||| |||||||||||||  ||| |||||||| |||   u
guuu uUUUUUCUUGUCG  GAC ACUAUauu aac   c
    g             GU   -        u   acu 


mirna_id: dme-mir-7
hairpin:
        u     U       U  U     U      uggu u 
gagugcau ccgua GGAAGAC AG GAUUU GUUGUu    c u
|||||||| ||||| ||||||| || ||||| ||||||    |  
uuuacgug ggcAU UCUUCUG UC CUAAA UAACaa    g u
        c     -       U  C     -      uaau g 


mirna_id: dme-mir-8
hairpin:
        cu uu -       -   G     C      uccuu 
aaggacau  g  c aCAUCUU ACC GGCAG AUUAGA     u
||||||||  |  | ||||||| ||| ||||| ||||||     u
uuccugug  c  g UGUAGAA UGG CUGUC UAAUcu     u
        -- cu C       A   A     A      caaua 


mirna_id: dme-mir-9a
hairpin:
    -     U       UAU      G     -  gau 
gcua uguug CUUUGGU   CUAGCU UAUGA gu   a
|||| ||||| |||||||   |||||| ||||| ||    
cgau auaAU GAAGCCA   GAUCGA AUacu ca   a
    u     U       UUC      A     g  aua 


mirna_id: dme-mir-10
hairpin:
     ucu   -  G    U             auacu 
ccacg   ACC CU UAGA CCGAAUUUGUUuu     a
|||||   ||| || |||| |||||||||||||      
ggugu   UGG GA AUCU GGCUUAAACagga     g
     gUU   A  G    U             auuuc 


mirna_id: dme-mir-11
hairpin:
       u         UCU      CCC   u  acu 
gcacuug CAAGAACUU   CUGUGA   Gcg gu   u
||||||| |||||||||   ||||||   ||| ||    
cgugagu GUUCUUGAG   GACACU   Cgc cg   a
       C         UCU      --A   -  aaa 


mirna_id: dme-mir-12
hairpin:
      UG     U    C          -  gccuu 
uacggu  AGUAU ACAU AGGUACUGGU gu     a
||||||  ||||| |||| |||||||||| ||      
gugcCG  UCAUA UGUA UUCAUGACca ca     a
      CA     C    -          a  accua 


mirna_id: dme-mir-13a
hairpin:
    u     C      -        A   --uc  cu 
uacg aaCUC UCAAAG GGUUGUGA AUG    ga  a
|||| ||||| |||||| |||||||| |||    ||   
gugc uUGAG AGUUUU CCGACACU Uac    cu  u
    u     U      A        A   ucau  au 


mirna_id: dme-mir-13b-1
hairpin:
   -ug           U      ACU    uauu 
cca   UCGUUAAAAUG UUGUGA   UAUG    c
|||   ||||||||||| ||||||   ||||     
ggu   AGCAGUUUUAC GACACU   AUac    a
   uUG           C      ---    uaac 


mirna_id: dme-mir-13b-2
hairpin:
uauu   G          A      GCUA      uu 
    aac CGUCAAAAUG CUGUGA    UGugga  u
    ||| |||||||||| ||||||    ||||||   
    uUG GCAGUUUUAC GACACU    AUacuu  g
--gu   A          C      ----      ca 


mirna_id: dme-mir-14
hairpin:
        C    CG      C     gcu 
uguGGGAG GAGA  GGGACU ACUgu   u
|||||||| ||||  |||||| |||||   a
aUAUCCUC CUCU  UUCUGA Ugaua   u
        U    UU      C     aau 


mirna_id: mmu-let-7g
hairpin:
  a   U        A            ugagg    -a  a    a 
cc ggc GAGGUAGU GUUUGUACAGUU     gucu  ug uacc c
|| ||| |||||||| ||||||||||||     ||||  || ||||  
gg cCG UUCCGUCA CGGACAUGUCAa     uaga  ac augg c
  a   -        C            -----    gg  -    c 


mirna_id: mmu-let-7i
hairpin:
     U                 U   --------  u     ugu 
cuggc GAGGUAGUAGUUUGUGC GUU        gg cgggu   g
||||| ||||||||||||||||| |||        || |||||   a
gaUCG UUCCGUCAUCGAACGCG Caa        uc gcccg   c
     -                 U   uagaggug  -     uua 


mirna_id: mmu-mir-1a-1
hairpin:
     gg c                GC     ugaacc 
gcuug  a ACAUACUUCUUUAUAU  CCAUA      u
|||||  | ||||||||||||||||  |||||       
cggac  U UGUAUGAAGAAAUGUA  GGUau      g
     uu A                -A     cgaauc 


mirna_id: mmu-mir-15b
hairpin:
   U       C  C      UA   a  ac 
cug AGCAGCA AU AUGGUU  CAu cu  a
||| ||||||| || ||||||  ||| ||  g
gAU UCGUCGU UA UACUAA  gua ga  u
   C       U  U      GC   -  ac 


mirna_id: mmu-mir-23b
hairpin:
  c   u   --          -  C      gugacu 
gg ugc uGG  GUUCCUGGCA UG UGAUUU      u
|| ||| |||  |||||||||| || ||||||       
cc acg aCC  UAGGGACCGU AC ACUAaa      g
  a   c   AU          U  -      auuaga 


mirna_id: mmu-mir-27b
hairpin:
                  AUUG        ugau     
aggugcAGAGCUUAGCUG    GUGAACag    uggu 
||||||||||||||||||    ||||||||    ||| u
uccaCGUCUUGAAUCGGU    CACUUguu    gccu 
                  --GA        --uc     


mirna_id: mmu-mir-29b-1
hairpin:
    a          U      GU      uuaaa 
agga GCUGGUUUCA AUGGUG  UUAgau     u
|||| |||||||||| ||||||  ||||||     a
ucUU UGACUAAAGU UACCAC  GAUcug     g
    G          U      --      uuagu 


mirna_id: mmu-mir-30a
hairpin:
   a            UC           -----   a 
gcg cUGUAAACAUCC  GACUGGAAGcu     gug a
||| ||||||||||||  |||||||||||     |||  
cgu GACGUUUGUAGG  CUGACUUUCgg     cac g
   C            --           guaaa   c 


mirna_id: mmu-mir-30b
hairpin:
c  ag     uuu     c            U   -        u aua 
 ua  ccaag   caguu aUGUAAACAUCC ACA CUCAGCUg c   c
 ||  |||||   ||||| |||||||||||| ||| |||||||| |    
 au  gguuc   gucga UGCAUUUGUAGG UGU GGGUCggu g   a
u  ga     --u     C            -   A        u cgu 


mirna_id: mmu-mir-99a
hairpin:
    A         UC   U      g  aag 
caua ACCCGUAGA  CGA CUUGUG ug   u
|||| |||||||||  ||| |||||| ||    
gugU UGGGUAUCU  GCU GAACgc gc   g
    C         UU   C      -  cag 


mirna_id: mmu-mir-99b
hairpin:
     cC         AC   C    C - -   c 
ggcac  ACCCGUAGA  CGA CUUG G g ggc u
|||||  |||||||||  ||| |||| | | |||  
cuguG  UGGGUGUCU  GCU GAAC c c ccg u
     CC         GU   C    a a g   c 


mirna_id: mmu-mir-101a
hairpin:
a       cuggc                  A    gucca 
 ggcugcc     UCAGUUAUCACAGUGCUG UGCu     u
 |||||||     |||||||||||||||||| ||||      
 ccgacgg     AGUCAAUAGUGUCAUGAC AUgg     u
a       uaggA                  -    aaauc 


mirna_id: mmu-mir-124-3
hairpin:
    - C        A   GA        uaaug 
cucu g GUGUUCAC GCG  CCUUGAUu     u
|||| | |||||||| |||  ||||||||      
gaga C CGUAAGUG CGC  GGAAUuaa     c
    a -        G   AC        cauau 


mirna_id: mmu-mir-125a
hairpin:
 ug  UC  UG   C    UA        ----  a 
c  gg  CC  AGA CCUU  ACCUGUGA    gg c
|  ||  ||  ||| ||||  ||||||||    ||  
g  CC  GG  UCU GGAG  UGGACAcu    cc g
 gu  GA  GU   U    --        ggga  u 


mirna_id: mmu-mir-125b-2
hairpin:
      UC  UG   C   A        -gg   u 
gccuag  CC  AGA CCU ACUUGUGA   uau u
||||||  ||  ||| ||| ||||||||   |||  
cggaUC  GG  UCU GGA UGAACAcu   aug u
      CA  GU   U   C        aca   a 


mirna_id: mmu-mir-126
hairpin:
u   a  a           U       C cug   c 
 gac gc CAUUAUUACUU UGGUACG G   uga a
 ||| || ||||||||||| ||||||| |   |||  
 cug cG GUAAUAAUGAG GCCAUGC c   acu c
a   g  C           U       U -aa   u 


mirna_id: mmu-mir-127
hairpin:
----      ugCUG         G  C      --  a 
    ccagcc     AAGCUCAGA GG UCUGAU  uc g
    ||||||     ||||||||| || ||||||  || a
    ggUCGG     UUCGAGUCU CC AGGCUa  ag a
ggcu      -----         G  U      cu  a 


mirna_id: mmu-mir-128-1
hairpin:
      uuC       UAG      CU       u 
guugga   GGGGCCG   CACUGU  GAgaggu u
||||||   |||||||   ||||||  |||||||  
cgacuu   CUCUGGC   GUGACA  CUcuuua a
      UUU       CAA      --       c 


mirna_id: mmu-mir-130a
hairpin:
-ga        C      UG  A  --  - ua 
   GCUCUUUU ACAUUG  CU CU  gu c  a
   |||||||| ||||||  || ||  || |   
   CGGGAAAA UGUAAC  GA ga  ca g  c
cUA        U      GU  C  gc  u ug 


mirna_id: mmu-mir-9-2
hairpin:
   g   UC               G      ug a 
guu uua  UUUGGUUAUCUAGCU UAUGAg  u u
||| |||  ||||||||||||||| ||||||  |  
caa aaU  AAGCCAAUAGAUCGA AUAcuu  g u
   a   GA               A      cu g 


mirna_id: mmu-mir-132
hairpin:
    A         UUC          -g     
gggc ACCGUGGCU   GAUUGUUACu  uggg 
|||| |||||||||   ||||||||||  ||| a
cccG UGGUACCGA   CUGACAAUgg  gcca 
    C         CAU          ag     


mirna_id: mmu-mir-133a-1
hairpin:
    a       AA  U  A        gccuc 
gcua aGCUGGU  AA GG ACCAAAUc     u
|||| |||||||  || || ||||||||      
cgau UCGACCA  UU CC UGGUUUag     u
    G       AC  C  C        guaac 


mirna_id: mmu-mir-134
hairpin:
     gU        U  -A   G    Gcgu  a 
agggu  GUGACUGG UG  CCA AGGG    gc c
|||||  |||||||| ||  ||| ||||    || u
uccca  CACUGAUC AC  GGU UCcc    ug c
     aC        C  CG   G    -acu  u 


mirna_id: mmu-mir-135a-1
hairpin:
agg         u u          UU            uucua 
   ccucacugu c cUAUGGCUUU  AUUCCUAUGUGA     u
   ||||||||| | ||||||||||  ||||||||||||     u
   ggaguggca G GGUGCCGAGG  UAGGGAUAUacu     g
aua         u C          -U            cgcuc 


mirna_id: mmu-mir-136
hairpin:
        C     UUU          uuc 
gaggACUC AUUUG   UGAUGAUGGa   u
|||||||| |||||   ||||||||||   u
cUUCUGAG UAAAC   GCUACUAccu   a
        -     UCU          cga 


mirna_id: mmu-mir-137
hairpin:
      ug   G           UG A     -  g 
cuucgg  ACG GUAUUCUUGGG  G UAAUa cg a
||||||  ||| |||||||||||  | ||||| || u
ggagcu  UGC CAUAAGAAUUC  U AUUgu gc u
      GA   G           GU -     u  a 


mirna_id: mmu-mir-138-2
hairpin:
--cAG             UCA     -ac   c  cg 
     CUGGUGUUGUGAA   GGCCG   gag ag  c
     |||||||||||||   |||||   ||| ||   
     GACCACAGCACUU   UCGgc   uuc uc  a
guUGG             -UA     cca   -  cu 


mirna_id: mmu-mir-140
hairpin:
    -  A             A       uu   uc 
ccug cC GUGGUUUUACCCU UGGUAGg  acg  a
|||| || ||||||||||||| |||||||  |||   
ggac GG CACCAAGAUGGGA ACCAUcu  ugu  u
    a  -             C       --   cg 


mirna_id: mmu-mir-141
hairpin:
   u       --    U          Au    gaa 
ggg cCAUCUU  CCAG GCAGUGUUGG  gguu   g
||| |||||||  |||| ||||||||||  ||||   u
ccc GGUAGAA  GGUC UGUCACAAUc  ucga   a
   -       AU    -          -c    agu 


mirna_id: mmu-mir-142
hairpin:
-ac           A         Uaa ag a 
   cCAUAAAGUAG AAGCACUAC   c  c c
   ||||||||||| |||||||||   |  |  
   GGUAUUUCAUC UUUGUGAUG   g  g u
guA           C         -Ug ga g 


mirna_id: mmu-mir-144
hairpin:
      G        A         -A    gu 
ggcugG AUAUCAUC UAUACUGUA  GUuu  g
|||||| |||||||| |||||||||  ||||   
cugaUC UGUAGUAG AUAUGACAU  caga  a
      A        -         ca    gu 


mirna_id: mmu-mir-145a
hairpin:
    c  UC    U  C            uggau 
cuca gG  CAGU UU CCAGGAAUCCCU     g
|||| ||  |||| || ||||||||||||     c
gaGU UC  GUCA AA GGUCCUUAgggg     u
    -  UU    U  A            uagaa 


mirna_id: mmu-mir-146a
hairpin:
    cU            C        auauc 
agcu  GAGAACUGAAUU CAUGGGUU     a
||||  |||||||||||| ||||||||      
ucGA  UUCUUGACUUAA GUGUCCag     a
    -C            A        acugu 


mirna_id: mmu-mir-149
hairpin:
   U   G      G     A     g g   g 
ggc CUG CUCCGU UCUUC CUCCC u uuu u
||| ||| |||||| ||||| ||||| | |||  
uCG GGC GGGGCA GGAGG GAGgg a gag c
   U   G      G     -     - g   c 


mirna_id: mmu-mir-150
hairpin:
            AC   U       U -   u 
cccugUCUCCCA  CCU GUACCAG G cug g
||||||||||||  ||| ||||||| | ||| c
ggGAUAGGGGGU  GGA CAUGGUC c gac c
            CC   -       c a   u 


mirna_id: mmu-mir-151
hairpin:
    c            CA          u uc 
ccug ccUCGAGGAGCU  CAGUCUAGUa g  u
|||| ||||||||||||  |||||||||| |  c
ggac GGAGUUCCUCGG  GUCAGAUCau c  c
    a            -A          c cu 


mirna_id: mmu-mir-152
hairpin:
                 G  A    CC    cgg   c 
ccgggccUAGGUUCUGU AU CACU  GACU   gcu u
||||||||||||||||| || ||||  ||||   |||  
ggcccgGGUUCAAGACA UA GUGA  CUga   cga g
                 G  C    --    ---   g 


mirna_id: mmu-mir-153
hairpin:
     -             GU       -a  aa 
cggug ucauuUUUGUGAC  UGCAGCU  gu  u
||||| |||||||||||||  |||||||  ||  a
guuaC AGUGAAAACACUG  ACGUUga  cg  u
     U             AU       cc  ag 


mirna_id: mmu-mir-154
hairpin:
            U      UGCC    - uuu 
gaagaUAGGUUA CCGUGU    UUCG c   a
|||||||||||| ||||||    |||| |   u
uuuUUAUCCAGU GGCACA    AAgc g   u
            U      UACU    a ugc 


mirna_id: mmu-mir-155
hairpin:
              UGU A        uu gcc 
cugUUAAUGCUAAU   G UAGGGGUu  g   u
||||||||||||||   | ||||||||  |    
gaCAAUUACGAUUG   C AUCCUCag  c   c
              --U C        -u agu 


mirna_id: ath-MIR156a
hairpin:
c      aac   -aa   a         -   -         a   ---      uu    ua 
 aagaga   gca   gaa cUGACAGAA GAG AGUGAGCAC caa   aggcaa  ugca  u
 ||||||   |||   ||| ||||||||| ||| ||||||||| |||   ||||||  ||||   
 uucucu   cgu   cuu gacugucuu cuc ucacucgug guu   uucguu  acgu  c
u      agu   ggc   a         u   g         c   cuc      -c    ua 


mirna_id: ath-MIR156b
hairpin:
-      ----           u  u  uu    -aau   -a      ----a           -     -       au   g   cu      u 
 gcuaga    agagggagaga gg ga  gagg    gca  cagaga     aacUGACAGAA GAGAG UGAGCAC  gca gca  guuaug g
 ||||||    ||||||||||| || ||  ||||    |||  ||||||     ||||||||||| ||||| |||||||  ||| |||  ||||||  
 cgguuu    ucucucucucu uc cu  cucc    cgu  gucucu     uugacugucuu cucuc acucgug  ugu cgu  caauau u
u      aaac           c  u  cu    aguu   cc      auccg           u     c       cg   g   uu      c 


mirna_id: ath-MIR156c
hairpin:
c  aua   a        -    -         a   ---     cuu     g 
 gc   gaa cUGACAGA AGAG AGUGAGCAC caa   aggca   ugcau u
 ||   ||| |||||||| |||| ||||||||| |||   |||||   ||||| u
 cg   cuu gacugucu ucuc ucacucgug guu   uucgu   acgua c
u  -gc   a        a    g         c   cuc     -uu     g 


mirna_id: ath-MIR156d
hairpin:
g        aaa     --        -            a      g  agu       a 
 auggggga   gaagu  UGACAGAA GAGAGUGAGCAC caaagg ga   uguauaa a
 ||||||||   |||||  |||||||| |||||||||||| |||||| ||   ||||||| g
 uacuuccu   cuuca  acuguuuu cucucacucgug guuuuc uu   auauguu u
-        ---     au        u            c      g  ggu       u 


mirna_id: ath-MIR156e
hairpin:
   a         -                    ggu   uu     ---    uu 
agg ggUGACAGA AGAGAGUGAGCACacauggu   uuc  gcaug   cuuu  u
||| ||||||||| ||||||||||||||||||||   |||  |||||   ||||  g
ucc ccacugucu ucucucauucguguguaucg   aag  cguac   ggga  a
   -         c                    ---   uu     uuu    uu 


mirna_id: ath-MIR156f
hairpin:
   u  u    aauu  ---u      A  -                    ggcu   uu    auuug 
gag gg gagg    ga    ggUGAC GA AGAGAGUGAGCACacauggu    uuc  gcau     a
||| || ||||    ||    |||||| || ||||||||||||||||||||    |||  ||||     a
cuc cc cucc    cu    ccacug cu ucucucacucguguguaucg    aag  cgua     g
   -  u    cucu  uccc      c  a                    ----   uu    ccuug 


mirna_id: ath-MIR157a
hairpin:
-   U         -A             u  -      a   uuc    c 
 gug UGACAGAAG  UAGAGAGCACaga ga ugagau caa   ggag a
 ||| |||||||||  ||||||||||||| || |||||| |||   ||||  
 cac acugucuuc  aucucucguguuu cu auucua guu   ucuu u
c   u         cg             c  c      c   ---    g 


mirna_id: ath-MIR157b
hairpin:
u   ---a    -u    -a   U         -A             u  -      a   uuccuc 
 ggg    ggca  ugau  gug UGACAGAAG  UAGAGAGCACaga ga uaagau caa      g
 |||    ||||  ||||  ||| |||||||||  ||||||||||||| || |||||| |||      c
 ccc    ccgu  auug  cac acugucuuc  aucucucguguuu cu auucua guu      a
a   acua    uu    cc   u         cg             c  c      c   ucuucg 


mirna_id: ath-MIR157c
hairpin:
     u     ------u    uu   u  U        -           uaaggaugacaugcaaguacauacauauauaucaucacaccgcauguggaugauaaaaua 
agguu gagag       gaug  ggu gU GACAGAAG AUAGAGAGCAC                                                            u
||||| |||||       ||||  ||| || |||||||| |||||||||||                                                            g
uccaa cucuc       cuau  cca ca cugucuuc uaucucucgug                                                            u
     u     uucuucu    uu   c  -        a           uuuucucaucucuacguccaagagagagaaagagagggagagaaagaaacuuaaacaaua 


mirna_id: ath-MIR157d
hairpin:
        u     u ------u   u c         -           ua    ugcuaugcaaaacagacacagauauguguuucuaauuguauuucauacuuuaaccuc 
guggaggg gauag g       ggu g UGACAGAAG AUAGAGAGCAC  agga                                                         a
|||||||| ||||| |       ||| | ||||||||| |||||||||||  ||||                                                         a
caucucuc uuauc c       cca c acugucuuc uaucucucgug  uccu                                                         a
        u     u uuucuuu   - u         g           ua    uaucucuacgucuaucagaagaucgagaagauagaaagaaagaaaaaaauauaguug 


mirna_id: ath-MIR158a
hairpin:
  -        u u   cuu           a   u     a  ug   a 
ac acgucauc c gug   cuuugucuaca uuu ggaaa ag  aug c
|| |||||||| | |||   ||||||||||| ||| ||||| ||  |||  
ug uguaguag g cau   GAAACAGAUGU AAA CCUuu uc  uac g
  c        u c   aAC           -   C     c  gu   c 


mirna_id: ath-MIR159a
hairpin:
            aa        cau    -u    ------       aga      g  a  c    g uc     -    cu       guaa 
guagagcuccuu  aguucaaa   gagu  gagc      aggguaa   aaagcu cu ag uaug a  ccaua agcc  aauccuu    a
||||||||||||  ||||||||   ||||  ||||      |||||||   |||||| || || |||| |  ||||| ||||  |||||||    g
cAUCUCGAGGGA  UUAGGUUU   cuca  uucg      ucccguu   uuucga ga uc auac u  gguau uugg  uuaggaa    u
            AG        cuu    uu    guaauu       caa      g  c  u    g ua     a    -u       aaaa 


mirna_id: ath-MIR160a
hairpin:
      C       CU         a   u   cc     a 
guaUGC UGGCUCC  GUAUGCCAu ugc gag  caucg g
|||||| |||||||  ||||||||| ||| |||  ||||| u
uauacg accgagg  uaugcggua gug cuc  guagc a
      u       ag         g   c   ca     u 


mirna_id: ath-MIR160b
hairpin:
       C     C -           a  aaaac        ag 
gucgUGC UGGCU C CUGUAUGCCAc ag     aucgauuu  u
||||||| ||||| | ||||||||||| ||     ||||||||  u
caguacg acuga g gacaugcggug uc     uagcuaaa  u
       a     u a           a  ---ac        ac 


mirna_id: ath-MIR160c
hairpin:
       C       C          ga ug aua         g 
guuaUGC UGGCUCC UGUAUGCCAc  g  g   ccgauuuug u
||||||| ||||||| ||||||||||  |  |   |||||||||  
caguacg acugagg acaugcggug  c  c   ggcuaaaau u
       a       a          gc gu ---         u 


mirna_id: ath-MIR161
hairpin:
u    ga    gg      ac   uuuau     c   C      U            C         cc    uuuu     ----        
 gcuu  ucuc  uuuuug  cag     ugcgu gaU AAUGCA UGAAAGUGACUA AUCGGGGUu  gauu    uuguu    cuucaua 
 ||||  ||||  ||||||  |||     ||||| ||| |||||| |||||||||||| |||||||||  ||||    |||||    |||||| u
 cgaa  aggg  aaaaau  guu     acgua cua uuacgu acuuucacugau uggucccaa  cuaa    gacaa    gaaguag 
a    -a    ag      --   ----u     a   a      c            u         --    ---u     aggc        


mirna_id: ath-MIR162a
hairpin:
u   ug -     -  - ug    ----u       g    c    c        c   c   gaac    u 
 agu  g aagaa ga g  agag     cgcugga gcag gguu aucgaucu uuc ugu    acau a
 |||  | ||||| || |  ||||     ||||||| |||| |||| |||||||| ||| |||    |||| a
 uca  u uucuu cu u  ucuc     gcGACCU CGUC CCAA UAGCUaga aag acg    ugua a
u   gu a     u  a gu    cguuu       A    U    A        u   u   aaaa    a 


mirna_id: ath-MIR162b
hairpin:
    g    --       g    c    c       a    ------c        uuu 
gagu aagu  cgcugga gcag gguu aucgauc auuc       ugugaaua   a
|||| ||||  ||||||| |||| |||| ||||||| ||||       ||||||||    
cucg uucg  gcGACCU CGUC CCAA UAGCUag uaag       acauuugu   u
    -    uc       A    U    A       c    aacgaaa        uuu 


mirna_id: ath-MIR163
hairpin:
acccgguggauaaaaucgaguuccaaccucuucaacgacaacgauuucaacacucucuuccaggaacaacuuccuccaggcagaugauacuaaagugcuggaguuccc      ugag  u     cau     aa     -a      a      ----gg     -   a 
                                                                                                            gguucc    ag gaguc   aucaa  ugcgc  uucguu ucacuu      uugaa ccc u
                                                                                                            ||||||    || |||||   |||||  |||||  |||||| ||||||      ||||| ||| u
                                                                                                            ccaagg    uc cucag   uaguu  augcg  agguaa agugga      aauuu ggg u
----ugugcccccuauuaUAGCUUCAAGGUUCAGGAGAAGUUgcugaaaucguagaugcuaaauucgugacgcgucaaugaagaagcuggcacgagaaggauucuucu      ugca  -     ---     -a     ca      -      gguuua     a   g 


mirna_id: ath-MIR164a
hairpin:
      ga u   c            CA   C         ccaa    ---c   a 
ggguga  a cuc auguUGGAGAAG  GGG ACGUGCAaa    caaa    acg a
||||||  | ||| ||||||||||||  ||| |||||||||    ||||    ||| a
cccacu  u gag uacaaccucuuc  uuc ugcacguuu    guuu    ugc u
      uc c   -            aa   a         auuc    acuc   c 


mirna_id: ath-MIR164b
hairpin:
     A    CA         CAuu          a    ----   u    c    --a      g     a     a 
gaUGG GAAG  GGGCACGUG    acuagcucau uaua    cac cuca caca   augcgu uauau ugcgg a
||||| ||||  |||||||||    |||||||||| ||||    ||| |||| ||||   |||||| ||||| |||||  
cuacc cuuc  cccguguac    ugauugagua guau    gug gagu gugu   ugugua auaua guguu u
     a    ua         uucu          g    agua   u    u    gug      g     -     u 


mirna_id: ath-MIR165a
hairpin:
    a    a   uu      a           auagauauauacauguguaug 
guug gggg aug  gucugg ucgaggauauu                     u
|||| |||| |||  |||||| |||||||||||                     u
caac CCCC UAC  CGGACC GGCUccuauga                     a
    c    C   UU      A           gagauacuagugaacuuagua 


mirna_id: ath-MIR165b
hairpin:
u  --a     u   -u -     u    a   uu      a    g        aaac    acac    uu      u   a          g 
 ga   gaggc auu  c uguug gggg aug  guuugg ucga gauaucau    gcau    augu  auaugu aug ugcauuauau a
 ||   ||||| |||  | ||||| |||| |||  |||||| |||| ||||||||    ||||    ||||  |||||| ||| |||||||||| c
 cu   uuccg uaa  g acaac CCCC UAC  CGGACC GGCU cuauggua    cgua    uaca  uauaua uac auguaaugua u
a  aac     u   uu u     u    C   UU      A    g        -cac    --ca    --      -   -          g 


mirna_id: ath-MIR166a
hairpin:
-a     uuucu uu   a     c  uu      cu       u    cuc      u   uguuggaucucuuucgaucuaacaa 
  ggggc     c  uug gggga ug  gucugg  cgaggac cugg   gcucua uca                         u
  |||||     |  ||| ||||| ||  ||||||  ||||||| ||||   |||||| |||                          
  ccucg     g  aac CCCCU AC  CGGACC  GCUucug gauu   ugggau agu                         c
uc     ---uu uu   c     U  UU      AG       c    --u      u   uuagacuuuagacuuccaaguuaag 


mirna_id: ath-MIR166b
hairpin:
u  a     c  uu      cu   g   u  --u        a     -   --      u 
 ug gggga ug  gucugg  cga gac cu   auucuaau caauc uca  uuugaa a
 || ||||| ||  ||||||  ||| ||| ||   |||||||| ||||| |||  ||||||  
 ac CCCCU AC  CGGACC  GCU cug ga   ugggauua guuag agu  agacuu c
a  c     U  UU      AG   g   u  uuu        -     u   cu      a 


mirna_id: ath-MIR166c
hairpin:
     --u   u    a a   u  uu      cu     -    ga  aagagaaucacucgaauuaau 
gcgau   uag guug g gga ug  gucugg  cgagg ucau  ag                     u
|||||   ||| |||| | ||| ||  ||||||  ||||| ||||  ||                     u
cgcua   auc caau C CCU AC  CGGACC  GCUcu agua  uc                     g
     uuc   -    c C   U  UU      AG     u    ga  ccaaaagaauuaaacaagaag 


mirna_id: ath-MIR166d
hairpin:
     a a     auu      cu     -    ga  aagaucgguagauugauu 
gguug g ggaau   gucugg  cgagg ucau  ag                  c
||||| | |||||   ||||||  ||||| ||||  ||                   
ccaac C CCUUA   CGGACC  GCUcu agua  uc                  a
     c C     CUU      AG     u    aa  ccuaaagugagaaauuuu 


mirna_id: ath-MIR166e
hairpin:
u           uu      ca   g c c      uagaucuauauuugauuauauauauaugucucuu 
 ugaggggaaug  gucugg  cga g c uuaacu                                  c
 |||||||||||  ||||||  ||| | | ||||||                                  u
 acuCCCCUUAC  CGGACC  GCU c g aauugg                                  u
a           UU      AG   g a u      cauuuuacuaguaaguacauaucugauuacuuau 


mirna_id: ath-MIR166f
hairpin:
     c   u      u      cu   g c    -ca   -  ---      u 
aaguu agg gaauga gccugg  cga a cauu   auc uc   augauc c
||||| ||| |||||| ||||||  ||| | ||||   ||| ||   ||||||  
uucaa uCC CUUACU CGGACC  GCU u guag   uag ag   uauuag a
     c   C      U      AG   g a    uag   u  caa      u 


mirna_id: ath-MIR166g
hairpin:
     --uua     u  a      uu      cu     -    gg     aauuc   a 
gcgau     ggguu ag ggaaug  guuugg  cgagg ucau  agagu     guu a
|||||     ||||| || ||||||  ||||||  ||||| ||||  |||||     ||| c
cgcua     uccaa uC CCUUAC  CGGACC  GCUcu agua  ucuca     caa c
     uuuua     c  C      UU      AG     u    aa     aaacu   c 


mirna_id: ath-MIR167a
hairpin:
u     ac   -  u u a         C              -  -  -u     -au  u    ug    
 ggugc  cgg ca c g UGAAGCUGC AGCAUGAUCUAauu ag cu  ucuuu   cc uugu  ugu 
 |||||  ||| || | | ||||||||| |||||||||||||| || ||  |||||   || ||||  || u
 ccacg  guc gu g c acuuugacg uuguacuagauuag uc ga  agaga   gg agca  acu 
c     cu   a  u c c         c              c  u  cu     auu  u    gu    


mirna_id: ath-MIR167b
hairpin:
     ca     A    - -C           u   u    aa   aug      g 
gggaa  agUGA GCUG C  AGCAUGAUCUA cuu gguu  gag   aaugug a
|||||  ||||| |||| |  ||||||||||| ||| ||||  |||   ||||||  
uccuu  ucacu cgac g  ucguacuggau gaa ccaa  uuc   uuauac a
     cc     c    a uc           c   c    -a   --g      a 


mirna_id: ath-MIR168a
hairpin:
    a   -  c  g      C          U     A       ggcugacacagccucgugacuuu 
cacc ucg gg uc gauUCG UUGGUGCAGG CGGGA ccaauuc                       u
|||| ||| || || |||||| |||||||||| ||||| |||||||                        
gugg agc cc ag cuaagu aacuacguuc gcccu gguuagg                       a
    -   u  u  g      c          c     a       gacgaguguuugguuauuuccaa 


mirna_id: ath-MIR168b
hairpin:
     gg   u   g      C          U     Acugauug   g  --      a    uc 
uuacc  cgg cuc gauUCG UUGGUGCAGG CGGGA        gcu ac  accgac cgug  u
|||||  ||| ||| |||||| |||||||||| |||||        ||| ||  |||||| ||||   
agugg  gcc gag cuaagu aacuauguuc gcccu        cga ug  ugguug guac  u
     -a   u   g      c          u     --------   g  uu      -    ug 


mirna_id: ath-MIR169a
hairpin:
      -           C         UG           uaaaugaucuuucuuuauacucuauuaagacaauuuaguuucaaacuuuuuuuuuuuuuuuuuuuugaagg 
gugacg aaaguagugug AGCCAAGGA  ACUUGCCGAuu                                                                       a
|||||| ||||||||||| |||||||||  |||||||||||                                                                       u
cgcugu uuucauugcac ucgguuccu  ugaacggcuag                                                                       u
      g           a         gu           uacaaugaaaaagaaaaaccaaaauauauagaacauaaaauaugccuuauuauauaggauuaaagaaggac 


mirna_id: ath-MIR170
hairpin:
        uc cucu         c       c      ucucuuu 
cgagagag  c    gauauuggc ugguuca ucagau       u
||||||||  |    ||||||||| ||||||| ||||||        
gcucucuc  g    CUAUAACUG GCCGAGU AGUcua       a
        cu -acu         U       U      cucaauc 


mirna_id: ath-MIR171a
hairpin:
          cc  uu         c       c      cuuaccugaccacacacguag 
augagagagu  cu  gauauuggc ugguuca ucagau                     a
||||||||||  ||  ||||||||| ||||||| ||||||                      
ugcucucuca  ga  CUAUAACCG GCCGAGU AGUcua                     u
          -u  cu         C       U      uuagaucucucuuauuacaua 


mirna_id: ath-MIR172a
hairpin:
--u c  ug               a   cuguugauggacgguggugauuc 
   g ug  gcaucaucaagauuc cau                       a
   | ||  ||||||||||||||| |||                        
   c AC  CGUAGUAGUUCUAAG gua                       c
cgg U  GU               A   aaaguaucucuugaaacaccucu 


mirna_id: ath-MIR172b
hairpin:
--a gc      C           A    gaa  uga    u        
   g  GCAGCA CAUUAAGAUUC Caug   au   uaaa acccuaa 
   |  |||||| ||||||||||| ||||   ||   |||| |||||| a
   c  CGUCGU GUAGUUCUAAG guau   ua   guuu ugggauu 
caa UA      A           A    aug  -ua    -        


mirna_id: ath-MIR173
hairpin:
     a            G      A      u  ucaaaaaag   u  u 
uaagu cuUUCGCUUGCA AGAGAA UCACag gg         uug ag u
||||| |||||||||||| |||||| |||||| ||         ||| ||  
guucg gAAAGCGAAUGU UCUCUU AGUguc cc         aau uc u
     a            G      -      u  uuucucuga   -  u 


mirna_id: ath-MIR159b
hairpin:
------g            ga       u       uu   ------    ug    -      g  a  c     auc      -----         aau       
       gaagagcuccuu  aguucaa ggagggu  agc      aggg  aagu aaagcu cu ag uaugg   ccauaa     gccuuauca   ucaaua 
       ||||||||||||  ||||||| |||||||  |||      ||||  |||| |||||| || || |||||   ||||||     |||||||||   ||||| u
       cUUCUCGAGGGA  UUAGGUU cuucuca  ucg      uccc  uuca uuucga ga uc auacc   gguauu     uggaauagu   aguuaa 
cucucua            AG       U       cu   guaauu    ca    c      g  c  u     gua      uuuuu         ---       


mirna_id: mmu-mir-10b
hairpin:
     A    G     C          -ug  ac 
uauaU CCCU UAGAA CGAAUUUGUG   gu  c
||||| |||| ||||| ||||||||||   ||   
auAUA GGGG AUCUU GCUUAGACac   ua  c
     A    -     A          uga  ca 


mirna_id: mmu-mir-129-1
hairpin:
     -       C   CU      G   uu  -  c 
uggau CUUUUUG GGU  GGGCUU Cug  cu cu g
||||| ||||||| |||  |||||| |||  || ||  
aucUA GAAAAAC CCA  CCCGAA gac  ga ga a
     U       C   UU      g   -u  u  c 


mirna_id: mmu-mir-181a-2
hairpin:
   u  A   U      CU       A    gggauuc 
cca gg ACA UCAACG  GUCGGUG GUuu       a
||| || ||| ||||||  ||||||| ||||       a
gGU CC UGU AGUUGC  CAGCCAc caaa       a
   U  A   C      --       -    aaaacaa 


mirna_id: mmu-mir-182
hairpin:
     uU       U -G      UCA      uaaggu 
accau  UUGGCAA G  UAGAAC   CACCGg      a
|||||  ||||||| |  ||||||   ||||||       
uggua  AACCGUU C  AUCUUG   GUGgcc      a
     UC       - AG      ---      cagggu 


mirna_id: mmu-mir-183
hairpin:
    g      --AC     GA        --   ac 
cugu UAUGGC    UGGUA  AUUCACUg  uga  a
|||| ||||||    |||||  ||||||||  |||   
gaca AUACCG    GCCAU  UAAGUGac  acu  g
    A      GGAA     --        ug   cu 


mirna_id: mmu-mir-184
hairpin:
   u         C      AG     -    ug 
ccu uCCUUAUCA UUUUCC  CCAGC uuug  a
||| ||||||||| ||||||  ||||| ||||   
gga GGGAAUAGU AAGAGG  GGUug gaau  c
   U         C      CA     u    cu 


mirna_id: mmu-mir-185
hairpin:
      UG   A     G         Au  uc 
agggau  GAG GAAAG CAGUUCCUG  gg  c
||||||  ||| ||||| |||||||||  ||   
uuccUG  CUC CUUUC GUCGGGGAc  cc  c
      GU   -     G         --  uc 


mirna_id: mmu-mir-186
hairpin:
                U    UU      ucucau 
acuuucCAAAGAAUUC CCUU  GGGCUu      u
|||||||||||||||| ||||  ||||||       
ugaaGGGUUUUUUAAG GGAA  CCCGaa      u
                U    -U      uuuuau 


mirna_id: mmu-mir-187
hairpin:
ucA    A           C  -  c - ug 
   GGCU CAACACAGGAC CG GG g c  c
   |||| ||||||||||| || || | |   
   CCGA GUUGUGUUCUG GC cc c g  u
-GG    C           U  U  c a uc 


mirna_id: mmu-mir-188
hairpin:
   ca  UC         GU      -ugag u 
ucu  CA  CCUUGCAUG  GGAGGG     c c
|||  ||  |||||||||  ||||||     | u
agg  GU  GGGACGUAC  CCUCcc     g c
   AC  UU         AC      caaaa u 


mirna_id: mmu-mir-24-1
hairpin:
    g  G   A         UA     ucuca 
cucc GU CCU CUGAGCUGA  UCAGU     u
|||| || ||| |||||||||  |||||     u
gagG CA GGA GACUUGACU  GGUca     u
    A  A   C         -C     cacac 


mirna_id: mmu-mir-190a
hairpin:
    - UG               UA     uuau 
cugu g  AUAUGUUUGAUAUAU  GGUug    u
|||| |  |||||||||||||||  |||||     
gaca C  UAUACGAACUAUAUA  UCAac    u
    U CU               --     cuaa 


mirna_id: mmu-mir-191
hairpin:
      C          C  AA       uu  -  c 
agcggg AACGGAAUCC AA  GCAGCUG  gu cu c
|||||| |||||||||| ||  |||||||  || ||  
ucguCC UUGCUUUAGG UU  CGUCGac  ua ga a
      C          -  CA       cu  c  g 


mirna_id: hsa-mir-192
hairpin:
gccgagacc   u  --   g g  C         -     A       ugcucuc 
         gag gc  aca g cu UGACCUAUG AAUUG CAGCCag       g
         ||| ||  ||| | || ||||||||| ||||| |||||||        
         cuc cg  ugu u GA ACUGGAUAC UUAAC GUCgguc       u
cgaccguaa   -  cu   a g  C         C     C       uccccuc 


mirna_id: mmu-mir-193a
hairpin:
   ag     U     CG   A  A    agu 
gag  cUGGG CUUUG  GGC AG UGAg   g
|||  ||||| |||||  ||| || ||||    
cuc  GACCC GAAAC  CCG UC Acuu   u
   cU     U     AU   G  A    gac 


mirna_id: mmu-mir-194-1
hairpin:
      U         A      G    --   u 
aucggg GUAACAGCA CUCCAU UGGA  cug g
|||||| ||||||||| |||||| ||||  |||  
uaguCU CAUUGUCGU GAGGUG ACCu  ggc c
      U         C      -    ua   u 


mirna_id: mmu-mir-195a
hairpin:
a    ca     -     cucU          -A          u  gga 
 cacc  acucu ccugg    AGCAGCACAG  AAUAUUGGCa gg   a
 ||||  ||||| |||||    ||||||||||  |||||||||| ||   g
 gugg  uggga ggaCC    UCGUCGUGUC  UUAUAACCgu cu   u
a    --     c     ----          GG          -  gag 


mirna_id: hsa-mir-196a-1
hairpin:
      UA   A    C         - Gc ugg 
gugaau  GGU GUUU AUGUUGUUG G  c   g
||||||  ||| |||| ||||||||| |  |   u
cacuua  cca caaa uacaacaac c  g   u
      gc   c    u         a aa ucu 


mirna_id: hsa-mir-197
hairpin:
        C    A       CA    GA   -   a 
ggcugugc GGGU GAGAGGG  GUGG  GGu aag g
|||||||| |||| |||||||  ||||  ||| |||  
ccgguaCG CCCA CUCUUCC  CACU  cca uuc c
        A    C       AC    Uc   c   u 


mirna_id: hsa-mir-198
hairpin:
     -GG  CAG        U   UUCcug 
ucauu   UC   AGGGGAGA AGG      u
|||||   ||   |||||||| |||       
aguaa   ag   ucucuucu ucc      g
     aua  aua        -   uuuuua 


mirna_id: mmu-mir-199a-1
hairpin:
   auC       U        C   -------    g 
gcc   CCAGUGU CAGACUAC UGU       UCag a
|||   ||||||| |||||||| |||       ||||  
cgg   GGUUACA GUCUGAUG ACA       gguc g
   AUU       C        -   uguacag    g 


mirna_id: hsa-mir-199a-1
hairpin:
   aaC       U        C   U  ---g     
gcc   CCAGUGU CAGACUAC UGU Ca    gagg 
|||   ||||||| |||||||| ||| ||    ||| c
cgg   GGUUACA GUCUGAUG ACA gu    cucu 
   AUU       C        -   u  guaa     


mirna_id: mmu-mir-200b
hairpin:
     ggc    -    UG     C      u gug 
gccgu   CAUC UUAC  GGCAG AUUGGA a   u
|||||   |||| ||||  ||||| |||||| |    
cggcA   GUAG AAUG  CCGUC UAAUcu u   c
     ---    U    GU     A      c agu 


mirna_id: mmu-mir-201
hairpin:
        U   U            UUc   a 
uaccuUAC CAG AAGGCAUUGUUC   uau u
|||||||| ||| ||||||||||||   |||  
augGGAUG GUC UUCCGUGACAAG   aua u
        U   U            Uaa   a 


mirna_id: mmu-mir-202
hairpin:
     u           -A          Ug       
guucc uuUUCCUAUGC  UAUACUUCUU  uggauc 
||||| |||||||||||  ||||||||||  ||||| u
cgagg AGAAGGGUACG  AUAUGGAGAa  aucugg 
     u           CG          --       


mirna_id: mmu-mir-203
hairpin:
   u    c         U    G    A     c    
gcc gguc AGUGGUUCU GACA UUCA CAguu ugu 
||| |||| ||||||||| |||| |||| ||||| || a
cgg ccaG UCACCAGGA UUGU AAGU Guuaa acg 
   c    A         U    A    -     c    


mirna_id: mmu-mir-204
hairpin:
u    U          A     U    gagaau 
 ggac UCCCUUUGUC UCCUA GCCU      a
 |||| |||||||||| ||||| ||||      u
 cuUG AGGGAAACGG AGGGU CGga      a
a    C          A     -    ggaagu 


mirna_id: mmu-mir-205
hairpin:
      UC           C        ucuua 
cucuug  CUUCAUUCCAC GGAGUCUG     u
||||||  ||||||||||| ||||||||      
gaggAC  GAAGUGAGGUG CUUUAGac     g
      UC           A        caacc 


mirna_id: mmu-mir-206
hairpin:
     -                  C U     auau 
ccagg ccACAUGCUUCUUUAUAU C CAUAg    c
||||| |||||||||||||||||| | |||||    u
gguuu GGUGUGUGAAGGAAUGUA G GUauc    c
     u                  A -     acga 


mirna_id: mmu-mir-207
hairpin:
    c     u      cu  -         -     g ag 
aagg agggg gagggg  gc gggaggagc cgggc g  g
|||| ||||| ||||||  || ||||||||| ||||| |   
uuuc uCUCC CUCCUC  CG UCCUCUUCG guucg c  c
    -     -      -U  G         c     g gu 


mirna_id: hsa-mir-208a
hairpin:
u   g           g  c  gg      c  a 
 gac ggcgagcuuuu gc cg  uuauac ug u
 ||| ||||||||||| || ||  |||||| || g
 cug uUGUUCGAAAA CG GC  AAUAug ac c
a   g           A  A  AG      c  u 


mirna_id: hsa-mir-129-1
hairpin:
    -       C   CU      G   uu cu  c 
ggau CUUUUUG GGU  GGGCUU Cug  c  cu a
|||| ||||||| |||  |||||| |||  |  ||  
ucUA GAAAAAC CCA  CCCGAA gac  g  ga a
    U       C   UU      g   -u au  c 


mirna_id: hsa-mir-148a
hairpin:
              -  -A    CC    -   ag 
gaggcAAAGUUCUG AG  CACU  GACU cug  u
|||||||||||||| ||  ||||  |||| |||  a
cucUGUUUCAAGAC UC  GUGA  CUga gau  u
              A  AC    --    a   ag 


mirna_id: hsa-mir-30c-2
hairpin:
   uacU       U   ACA         guggaa 
aga    GUAAACA CCU   CUCUCAGCu      a
|||    ||||||| |||   |||||||||       
ucu    CAUUUGU GGA   GAGGGUCga      g
   uUCU       C   --A         aagaau 


mirna_id: hsa-mir-30d
hairpin:
guu  U         CCC           gua  ac 
   gu GUAAACAUC   GACUGGAAGcu   ag  a
   || |||||||||   |||||||||||   ||   
   CG CGUUUGUAG   CUGACUUUCga   uc  c
cau  U         --A           --a  ga 


mirna_id: mmu-mir-122
hairpin:
      GG       C           -  uc 
agcugU  AGUGUGA AAUGGUGUUUG ug  c
||||||  ||||||| ||||||||||| ||  a
ucgaua  UCACACU UUACCGCAAAc ac  a
      AA       A           u  ca 


mirna_id: mmu-mir-143
hairpin:
      G         G      U  -  ag 
ccugaG UGCAGUGCU CAUCUC GG uc  u
|||||| ||||||||| |||||| || ||   
ggaCUC AUGUCACGA GUAGAG cu ag  u
      G         A      U  g  gg 


mirna_id: mmu-mir-30e
hairpin:
g        uu  ua            UU           g aaggu 
 ggcagucu  gc  cUGUAAACAUCC  GACUGGAAGcu u     g
 ||||||||  ||  ||||||||||||  ||||||||||| |      
 ccgucgga  cg  GACAUUUGUAGG  CUGACUUUCga g     u
a        --  gC            --           g agagu 


mirna_id: hsa-mir-139
hairpin:
gug       -   U  A            g gg 
   uauUCUA CAG GC CGUGUCUCCAGU u  c
   ||||||| ||| || |||||||||||| |  u
   aUGAGGU GUC CG GCGCAGAGGUcg a  c
-ca       U   C  -            g gg 


mirna_id: hsa-mir-147a
hairpin:
      -a   caa      ug     ---aca   g 
aaucua  aga   cauuuc  cacac      cca a
||||||  |||   ||||||  |||||      ||| c
uuagau  UCU   GUAAAG  GUGUG      ggu u
      CG   -UC      GU     accgaa   a 


mirna_id: hsa-mir-7-1
hairpin:
--u    u  -      a  u        A     A       U      --     a 
   ugga gu uggccu gu cugugUGG AGACU GUGAUUU GUUGUu  uuuag u
   |||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
   aucu cg accgga ca gguAUACC UCUGA CACUAAA CAACag  aaauc a
gac    c  u      -  c        G     -       -      cu     a 


mirna_id: hsa-mir-7-2
hairpin:
cuggauacaga    acc       c    cU  A     A U     U       ucuua 
           gugg   ggcuggc ccau  GG AGACU G GAUUU GUUGUug     c
           ||||   ||||||| ||||  || ||||| | ||||| |||||||      
           cgcu   ccgaccg gguA  CC UCUGA C CUAAA CAACaac     u
----------a    --a       u    AU  A     C -     -       ucgcg 


mirna_id: hsa-mir-7-3
hairpin:
agauua   u  cugu     a        U  AA A  A       U      c  au 
      gag gg    ggucu gugcugug GG  G CU GUGAUUU GUUGUu ug  g
      ||| ||    ||||| |||||||| ||  | || ||||||| |||||| ||   
      cuu cc    ucaga cgcgauac cc  c ga cacugaa caacag au  u
---cag   c  ----     -        u  gg c  -       -      c  ca 


mirna_id: hsa-mir-10a
hairpin:
-----gauc   --c    uu        A    G     C          uaaggaa 
         ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
         |||   ||||  |||||||| |||| ||||| ||||||||||        
         aca   acag  gauguAUA GGGG AUCUA GCUUAAACac       u
ucucgccuc   aau    uu        A    -     U          ugguguu 


mirna_id: hsa-mir-10b
hairpin:
cca      guaa     u        A    G     C          -ug   u 
   gagguu    cguug cuauauaU CCCU UAGAA CGAAUUUGUG   gua c
   ||||||    ||||| |||||||| |||| ||||| ||||||||||   |||  
   cuucaa    guagc gguauaUA GGGG AUCUU GCUUAGACAc   uau c
--a      aaac     u        A    -     A          uga   g 


mirna_id: hsa-mir-34a
hairpin:
-    -a  --    -  ug     uU        -   A          -guga  a 
 ggcc  gc  ugug ag  uuucu  GGCAGUGU CUU GCUGGUUGUu     gc a
 ||||  ||  |||| ||  |||||  |||||||| ||| ||||||||||     ||  
 ccgg  ug  gcac uc  gaaga  CCGUCAUA GAA CGACUAACga     ug u
c    gg  uu    g  gu     UC        U   -          aggaa  a 


mirna_id: hsa-mir-181a-2
hairpin:
agaagggcuaucaggccagccuuca             A   U      CU       A    ggga 
                         gaggacuccaagg ACA UCAACG  GUCGGUG GUuu    u
                         ||||||||||||| ||| ||||||  ||||||| ||||    u
                         uuccugggguuCC UGU AGUUGC  CAGUCAC CAaa    u
------------------------a             A   C      --       -    aaag 


mirna_id: hsa-mir-181b-1
hairpin:
ccugugcagagauuauuuuuuaaaa       aucAA         CUG          gaa  g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUu   cu u
                         |||||||     |||||||||   ||||||||||   ||  
                         ccggugu     GUAAGUAAC   AGUCACUCga   gg g
-------------------uucgcc       -cAAC         --A          aca  u 


mirna_id: hsa-mir-181c
hairpin:
c   -aaauuug   a  g  ug   gAA        CU       A     ggca 
 gga        cca gg uu  ggg   CAUUCAAC  GUCGGUG GUuug    g
 |||        ||| || ||  |||   ||||||||  ||||||| |||||    c
 ccu        ggu cc ga  ccC   GUGAGUUG  CAGCUAC CAAac    u
u   accguuaa   -  g  gu   -AG        -C       -     ggac 


mirna_id: hsa-mir-182
hairpin:
ga    -  --ug    c      uU       U -G      UCA      ugaggu 
  gcug cu    ccuc ccccgu  UUGGCAA G  UAGAAC   CACUgg      a
  |||| ||    |||| ||||||  ||||||| |  ||||||   ||||||       
  cggc ga    ggag gggguA  AACCGUU C  AUCUUG   GUggcc      a
ca    c  cuca    c      UC       - AG      ---      uaggac 


mirna_id: hsa-mir-183
hairpin:
ccgcaga   u  ---c  -         g      --AC     GA        --   ac 
       gug ga    uc cuguucugu UAUGGC    UGGUA  AUUCACUg  uga  a
       ||| ||    || ||||||||| ||||||    |||||  ||||||||  |||   
       cac cu    ag gacgagaca AUACCG    GCCAU  UAAGUGac  acu  g
-----ag   -  agac  a         A      GGAA     --        ug   cu 


mirna_id: hsa-mir-187
hairpin:
g u      caccaugacacag    aga    g    A           C  -  C - ug 
 g cgggcu             ugug   ccuc GGCU CAACACAGGAC CG GG g c  c
 | ||||||             ||||   |||| |||| ||||||||||| || || | |   
 c gccugg             acgc   ggaG CCGA GUUGUGUUCUG GC cc c g  u
a -      -------------    -ag    G    C           U  U  c a uc 


mirna_id: hsa-mir-196a-2
hairpin:
-ug    - -uc       --c                  A          a ug   
   cucg c   agcugau   uguggcuUAGGUAGUUUC UGUUGUUGGG u  ag 
   |||| |   |||||||   |||||||||||||||||| |||||||||| |  | u
   gagc g   uuggcug   acauuGAGUCCGUCAAAG ACAACGGCuc a  uu 
cgg    u cuu       acu                  A          a gu   


mirna_id: hsa-mir-199a-2
hairpin:
aggaa   u  ggaga    -    c   gcC       U        C   --UCa  ac 
     gcu cu     uccu gcuc guc   CCAGUGU CAGACUAC UGU     gg  a
     ||| ||     |||| |||| |||   ||||||| |||||||| |||     ||   
     cga ga     ggga cggg cag   GGUUACA GUCUGAUG ACA     cc  a
----a   -  -----    a    u   AUU       C        -   uguug  gu 


mirna_id: hsa-mir-199b
hairpin:
cca    -acacc    cu  -     C       U       U    U  ----  a 
   gagg      ucca  cc gucua CCAGUGU UAGACUA CUGU Ca    gg c
   ||||      ||||  || ||||| ||||||| ||||||| |||| ||    ||  
   cucc      gggu  gg cggAU GGUUACA GUCUGAU GACA gu    cc u
-gg    cagauu    cg  u     U       C       -    u  uaaa  c 


mirna_id: hsa-mir-203a
hairpin:
g     gg a u   g         c         u    g    a     - ug 
 uguug  g c cgc cgcuggguc agugguucu aaca uuca caguu c  u
 |||||  | | ||| ||||||||| ||||||||| |||| |||| ||||| |   
 gcgac  c g gcg gcggcccaG UCACCAGGA UUGU AAGU Guuaa g  a
a     ag g c   g         A         U    A    -     c cg 


mirna_id: hsa-mir-204
hairpin:
ggcuacagucuuucu   -  -    ucg     U          A     U    gagaau 
               uca ug ugac   uggac UCCCUUUGUC UCCUA GCCU      a
               ||| || ||||   ||||| |||||||||| ||||| ||||      u
               ggu ac acug   acuUG AGGGAAACGG AGGGU CGga      a
--------------c   c  u    uua     C          A     -    ggaagu 


mirna_id: hsa-mir-205
hairpin:
aaagaucc    acaa       gcuu      UC           C        ucuca 
        ucag    uccaugu    cucuug  CUUCAUUCCAC GGAGUCUG     u
        ||||    |||||||    ||||||  ||||||||||| ||||||||     a
        aguc    agguacg    gaggaC  GAAGUGAGGUG CUUUAGac     c
------ac    ---g       ----      UU           A        caacc 


mirna_id: hsa-mir-210
hairpin:
accc  ca    -c           gg     c   cc   -      c  c -     
    gg  gugc  uccaggcgcag  cagcc cug  cac cgcaca ug g cugc 
    ||  ||||  |||||||||||  ||||| |||  ||| |||||| || | ||| c
    cc  cgcg  ggguccguguc  GUCGG GAC  GUG GCGUGU ac c gacc 
---c  ag    ac           uA     C   -A   U      C  c a     


mirna_id: hsa-mir-211
hairpin:
-  --ac   -gccau     uug     U         CA     C    agg  u 
 uc    cug      gugac   ugggc UCCCUUUGU  UCCUU GCCU   gc c
 ||    |||      |||||   ||||| |||||||||  ||||| ||||   || u
 ag    gac      cacug   acuCG GGGGAAACG  AGGGA CGgg   cg g
g  gcac   acccuu     uug     U         AC     -    --a  a 


mirna_id: hsa-mir-212
hairpin:
cggggcaccccgcccgga   c   c   -cA  U     CU      C      ccc     
                  cag gcg cgg   CC UGGCU  AGACUG UUACUg   gggc 
                  ||| ||| |||   || |||||  |||||| ||||||   ||| c
                  guc cgc gcc   GG ACUGA  UCUGAC AAUgac   cccg 
----------ccgccccg   -   a   aCC  C     CC      -      --u     


mirna_id: hsa-mir-181a-1
hairpin:
-u    -uu   -    -   uc  u A   U      CU       A    g  au 
  gagu   uga gguu gcu  ag g ACA UCAACG  GUCGGUG GUuu ga  u
  ||||   ||| |||| |||  || | ||| ||||||  ||||||| |||| ||  a
  cuca   acu ccaa cgg  uc C UGU AGUUGC  CAGCUAC CAaa cu  a
ac    ucu   a    u   ua  C A   U      --       -    a  aa 


mirna_id: hsa-mir-214
hairpin:
ggccu      acaga           u          ACA            aacau 
     ggcugg     guugucaugug cUGCCUGUCU   CUUGCUGUGCag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           U          CAC            cacuc 


mirna_id: hsa-mir-215
hairpin:
aucauuca   a      ------      a A  A    -U   U          uaua 
        gaa ugguau      acagga a UG CCUA  GAA UGACAGACaa    g
        ||| ||||||      |||||| | || ||||  ||| ||||||||||    c
        cuu aucgug      ugucuu u ac ggau  cuu acugucuguu    u
------aa   c      ucagua      a a  c    uu   u          ugag 


mirna_id: hsa-mir-216a
hairpin:
----  u     u   ----------     u         CU   A        ---a   u 
    ga ggcug gag          uuggc UAAUCUCAG  GGC ACUGUGAg    ugu c
    || ||||| |||          ||||| |||||||||  ||| ||||||||    |||  
    cu ccgau cuu          aaucg AUUAGGGUC  CUG UGACACUc    aca a
agca  c     c   uaacgagaca     U         -U   G        ccua   u 


mirna_id: hsa-mir-217
hairpin:
aguauaauuauuacaua    uu     c c  a  C     C          U -   aag 
                 guuu  gaugu g ag UA UGCAU AGGAACUGAU G GAu   a
                 ||||  ||||| | || || ||||| |||||||||| | |||    
                 caaa  cuacg c uc gu acgua uccuugacua c cug   a
--------------gaa    -u     a u  c  u     a          c a   acu 


mirna_id: hsa-mir-218-1
hairpin:
-   au  u  a   a   u      U         CU        gg    gag 
 gug  aa gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 |||  || || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 cau  uu cg cgc cug aaGGUA CACGAACUG  UUGGUAca  aaug   a
a   cu  -  a   a   c      C         CC        -a    agu 


mirna_id: hsa-mir-218-2
hairpin:
gac   --uc  u    g       uUU         CU        gguggaacga  g 
   cag    gc gcgg gcuuucc   GUGCUUGAU  AACCAUGU          ug a
   |||    || |||| |||||||   |||||||||  ||||||||          ||  
   guc    cg ugcc cgaaagG   CACGAACUG  UUGGUACa          gc a
-ac   cucu  -    a       CGC         UC        --------ag  a 


mirna_id: hsa-mir-219-1
hairpin:
-    c --------c    c       cU   U     A  G         a   uau 
 ccgc c         gggc gcggcuc  GAU GUCCA AC CAAUUCUcg guc   g
 |||| |         |||| |||||||  ||| ||||| || ||||||||| |||   g
 ggcg g         cccg cgccgaG  CUG CAGGU UG GUUGAGAgc cgg   c
g    a cuccaaacc    c       CC   -     C  A         -   ccu 


mirna_id: hsa-mir-221
hairpin:
-u     ----       cugg   a    -  UG   U         AUUU    -   c 
  gaaca    uccaggu    ggc ugaA CC  GCA ACAAUGUAG    cugu guu g
  |||||    |||||||    ||| |||| ||  ||| |||||||||    |||| ||| u
  cuugu    aggucca    ucg aCUU GG  CGU UGUUACAUC    GAca cgg u
cu     acaa       ----   g    U  GU   C         ----    a   a 


mirna_id: hsa-mir-222
hairpin:
gcu           uaggua  c   au              -     AUC   ucuu 
   gcuggaaggug      cc uca  ggCUCAGUAGCCAG UGUAG   CUg    u
   |||||||||||      || |||  |||||||||||||| |||||   |||    c
   cgaucuucuac      gg agu  cUGGGUCAUCGGUC ACAUC   gac    g
--u           ------  u   cu              U     GAc   uaau 


mirna_id: hsa-mir-223
hairpin:
c    ccuccu   -     a    cC U              GAGUUg       cau 
 cugg      gca gugcc cgcu  G GUAUUUGACAAGCU      gacacuc   g
 ||||      ||| ||||| ||||  | ||||||||||||||      |||||||   u
 gacc      cgu cacgg guga  C CAUAAACUGUUUGA      CUGUgag   g
-    ---auu   a     c    AC C              ------       aug 


mirna_id: hsa-mir-224
hairpin:
       CA         U   U      a u   ug  u 
gggcuuu  AGUCACUAG GGU CCGUUu g aga  au g
|||||||  ||||||||| ||| |||||| | |||  || u
cccgaaA  UCAGUGAUC CCG GGUAAA c uuu  ua g
       CA         -   U      A -   gu  c 


mirna_id: cel-mir-124
hairpin:
gu    - -uu     c      G    CUA   A       ----    au 
  ccca c   gucau ugGCAU CACC   GUG CUUUAGU    ggac  c
  |||| |   ||||| |||||| ||||   ||| |||||||    ||||   
  gggu g   cggug ACCGUA GUGG   CAC GGAAUca    ucug  u
--    a uac     c      A    -CG   -       accu    aa 


mirna_id: cel-mir-228
hairpin:
-----       -        A    C    C    A   A   -  aug a 
     ccuuauc ccguucgc AUGG ACUG AUGA UUC CGG cu   c u
     ||||||| |||||||| |||| |||| |||| ||| ||| ||   | a
     ggaguag ggcaggCG UACC UGGC UACU AGG Gcc ga   g a
uaauu       u        A    A    A    -   C   a  -ca c 


mirna_id: cel-mir-229
hairpin:
       A        G U        CCA    ggaaugccccccauugauuuuuuc 
cgccggc AUGACACU G UAUCUUUU   UCGu                        c
||||||| |||||||| | ||||||||   ||||                         
gcggccG UACUGUGG C AUGGAAAG   Agca                        c
       A        G U        ---    aagguuaaaaaaggggggcuuuuc 


mirna_id: cel-mir-230
hairpin:
uug    -         A        -      U       u   aaca 
   augu aaugccguc CUUGGUCG GCGAUU AAUAUUA cag    u
   |||| ||||||||| |||||||| |||||| ||||||| |||    a
   uacg uuauggcAG GGACCAGC UGUUGA UUAUGau guu    g
uua    c         A        G      -       u   aaag 


mirna_id: cel-mir-231
hairpin:
ua   cc  -a          A     --   AA        ---g   cuu 
  gca  ac  gguuguuCUG CUGUU  UCA  AGCUUGUA    uau   a
  |||  ||  |||||||||| |||||  |||  ||||||||    |||    
  ugu  ug  ucaacAAGAC GACAA  AGU  UCGAAUau    aua   a
-g   uu  gc          G     CU   GC        acaa   aau 


mirna_id: cel-mir-232
hairpin:
aa     auu        C        UC    AU      - uuaau  u 
  guuca   uuuggauc CUGCAGUU  GAUG  UUUAUC c     uc g
  |||||   |||||||| ||||||||  ||||  |||||| |     ||  
  caagu   agaucuAG GGCGUCAA  CUAC  AAAUag g     ag a
-a     acu        U        UU    GU      u ----u  a 


mirna_id: cel-mir-233
hairpin:
aua    -   uu          C   C -        C    u  uaac 
   uagc auc  ucugucUCGC CAU C CGUUGCUC AAUA uc    a
   |||| |||  |||||||||| ||| | |||||||| |||| ||    a
   gucg uag  agauagGGCG GUA G GUAACGAG UUau ag    c
--c    g   uc          U   C C        -    u  ugaa 


mirna_id: cel-mir-234
hairpin:
--caaaaaauga     C       CA    U       aaaa    uc 
            ucaaa GGUAUUC  GAGU GAUAAUA    ugcg  a
            ||||| |||||||  |||| |||||||    ||||   
            aguUU CCAUAAG  CUCG UUAUUau    acgc  g
auguguaucauc     C       AG    -       -cua    cu 


mirna_id: cel-mir-235
hairpin:
-u  gaagaua    g        UU  CU  U     A   ----g   a 
  cc       ucag aucAGGCC  GG  GA UGCAA AUU     uuc c
  ||       |||| ||||||||  ||  || ||||| |||     ||| c
  gg       aguc uAGUCCGG  CC  CU ACGUU Uaa     aag g
gc  -aaugag    -        -C  CU  C     A   auuaa   u 


mirna_id: cel-mir-236
hairpin:
ucg     -c    -         -       UU  A    U   -  gacu 
   gugac  gaug uccagCGUC UUACCUG  CA UAUU AGA cu    a
   |||||  |||| ||||||||| |||||||  || |||| ||| ||    u
   uacug  cugu aggUCGCAG AAUGGAC  GU AUAA Ucu ga    c
---     ua    u         U       -U  C    -   a  gaaa 


mirna_id: cel-mir-237
hairpin:
--------------     ca   cg      C   G  UU     A      c  a 
              uucua  uug  uggUCC UGA AA  CUCGA CAGCUu aa g
              |||||  |||  |||||| ||| ||  ||||| |||||| ||  
              aagau  aac  aCCAGG ACU UU  GAGCU GUCgaa uu u
caaggguucacuag     --   aa      A   G  UU     -      c  g 


mirna_id: cel-mir-238
hairpin:
----u   cau              UUC     C  U        cau    c 
     cuc   ugacuguuUGGAUG   UCGGA GU CAAAGCua   ccaa a
     |||   ||||||||||||||   ||||| || ||||||||   ||||  
     gag   auugauAGACUUAC   AGCCU CA GUUUcgau   gguu a
guacc   --u              CGU     -  U        ---    a 


mirna_id: cel-mir-239a
hairpin:
------u    guuu     u         C  A   GU      caauuuu 
       acac    gcaau UUUGUACUA AC UAG  ACUGGa       c
       ||||    ||||| ||||||||| || |||  ||||||        
       ugug    cguuA AAACGUGAU UG AUC  UGAccu       a
aguuugu    -gcu     C         C  -   UG      auauaaa 


mirna_id: cel-mir-239b
hairpin:
--------     aga   a          UA         A   -   a  ua 
        gcgac   ugc auuUUUGUAC  CACAAAAGU CUG guc uu  a
        |||||   ||| ||||||||||  ||||||||| ||| ||| ||   
        cguug   acg uAAAAACGUG  GUGUUUUCA Gac cgg ag  g
ucuauuuu     --a   g          UG         C   u   -  uu 


mirna_id: cel-mir-240
hairpin:
uuguua   -acuu    a  u         U A A    A     ugaa 
      gaa     uuuc aa CGAGGAUUU G G CUAG AUGCu    u
      |||     |||| || ||||||||| | | |||| |||||    u
      cuu     aaag uU GCUUCUAAA C C GGUC Uacga    g
-----a   gacau    a  C         C C C    A     ucau 


mirna_id: cel-mir-241
hairpin:
--c  gg      a  u        G  C    -     -   cau ca 
   gg  guguca ag UGAGGUAG UG GAGA AAUGA cgg   c  u
   ||  |||||| || |||||||| || |||| ||||| |||   |   
   uc  uacagu uC ACUUCGUC AC CUCU UUAcu gcu   g  a
gca  gg      g  U        G  U    G     u   aau au 


mirna_id: cel-mir-242
hairpin:
---------     c c      a     U   CCU     U    -a   a 
         uggcu g gagagu UUGCG AGG   UUGCU CGAg  gag a
         ||||| | |||||| ||||| |||   ||||| ||||  |||  
         aucgg c cuuuca aacgc ucc   aacga gcuu  cuu g
aaaaaacgu     c c      a     c   uau     c    ga   c 


mirna_id: cel-mir-243
hairpin:
--ugu     cauaa             G               -  gcuc 
     ucacg     gccugaUAUCUCG UGCGAUCGUACcgua uc    a
     |||||     ||||||||||||| ||||||||||||||| ||    c
     agugc     uggaCUAUAGGGC GCGCUAGCAUGGCau ag    a
agguu     ----a             G               u  auuc 


mirna_id: cel-mir-244
hairpin:
------  c  -u        cU         UAC    UG     -   cau 
      cu ca  aucucaau  CUUUGGUUG   AAAG  GUAUG gcu   c
      || ||  ||||||||  |||||||||   ||||  ||||| |||   g
      ga gu  uagaguua  GAAAUCGAC   UUUC  CAUac cga   a
uuuucg  u  uu        AG         --U    GU     a   aua 


mirna_id: cel-mir-245
hairpin:
cugaauu      ugg           CAA  U   U     uuu  uua 
       caaugu   agaGCUAUUUG   GG ACC AAUUG   ga   u
       ||||||   |||||||||||   || ||| |||||   ||    
       guuacg   uCUCGAUGAAC   CC UGG UUAac   cu   u
--cguuu      uua           CUC  C   -     --u  uag 


mirna_id: cel-mir-246
hairpin:
a  ug  uuauaa    u G    A   UUGU           uccca 
 uc  aa      aaca C CCUA CCG    CAUGUAAUAuu     g
 ||  ||      |||| | |||| |||    |||||||||||     a
 ag  uu      uugu G GGAU GGC    GUACAUUauag     g
c  gu  -caaac    C A    G   -UUU           uaaaa 


mirna_id: cel-mir-247
hairpin:
auuacca        -     U      A  U     A     cau   gc 
       gcuauuuu ccaag AGAGAA AG UUCUA UUACC   cau  a
       |||||||| ||||| |||||| || ||||| |||||   |||   
       cggugaaa gguUC UCUCUU UC GAGAU AGUgg   gua  c
---ucag        a     U      A  C     C     --u   aa 


mirna_id: cel-mir-248
hairpin:
uuucccg  -   -  cu     a    g     -a  -  a   u     uac 
       gc ugc aa  acggu agcg uaucc  gc cg ugu uucaa   u
       || ||| ||  ||||| |||| |||||  || || ||| |||||    
       cg acg uu  uguuA UCGC AUAGG  CG GC ACA Aaguu   g
-------  u   c  uu     C    A     CA  U  -   U     uac 


mirna_id: cel-mir-249
hairpin:
aua     gaa     A       A    C   UU     -   ca    c 
   cucuu   cgacu GCAACGC CAAA GUC  CUGUG cga  acau u
   |||||   ||||| ||||||| |||| |||  ||||| |||  ||||  
   gagaa   gcuga CGUUGCG GUUU CAG  GACAC guu  ugua g
aag     --a     C       A    U   --     U   --    a 


mirna_id: cel-mir-250
hairpin:
----a    cuuc g    c   UU      C  C     C  -   aaca 
     gggu    g acca gCC  CAGUUG CU GUGAU CG cca    c
     ||||    | |||| |||  |||||| || ||||| || |||    a
     ccca    c uggu CGG  GUCAAC GA CACUA gc ggu    a
uuuua    ugcu g    a   UU      U  -     A  a   aaau 


mirna_id: cel-mir-251
hairpin:
-ac      ugac -     U          U  CG         gg  g 
   uuucaa    c ccuug UAAGUAGUGG GC  CUCUUAUUa  uu a
   ||||||    | ||||| |||||||||| ||  |||||||||  ||  
   aaaguu    g ggaac auucaucacu ug  gagaauaau  ga a
uuu      uaaa u     u          -  au         --  a 


mirna_id: cel-mir-252
hairpin:
uccaggg   --uc        A       U  U  C C      cc   agu 
       guc    uuucaguu UAAGUAG AG GC G AGGUAA  gcc   c
       |||    |||||||| ||||||| || || | ||||||  |||   u
       uag    aaaguuaa auuCGUC UC CG C UCCAUU  Cgg   a
------g   uuau        a       U  -  U A      --   aaa 


mirna_id: cel-mir-253
hairpin:
-----  auu    - ga           uu    - A   C       -   AC  c 
     ga   guuc c  ucgccgcucuu  caCA C CCU ACUAACA CUG  Ca c
     ||   |||| |  |||||||||||  |||| | ||| ||||||| |||  ||  
     cu   caag g  agcggcGGGAA  GUGU G GGA UGAUUgu gau  gu g
cuuug  --g    u ac           GG    U C   -       a   ac  a 


mirna_id: cel-mir-254
hairpin:
--acua     -a             aa  -au      c       - au 
      ugcau  uugccgccuacag  gc   agauuu cacaaac c  u
      |||||  |||||||||||||  ||   |||||| ||||||| |  c
      acgua  agcggcGGAUGUC  CG   UCUAAA GUguuug g  g
uuuuug     ca             AG  CUU      C       u ga 


mirna_id: cel-mir-255
hairpin:
   ug  -ucgac       -     ---             G     C  -   au 
cag  gu      uaaauuu uggag   GUAAGAAAUCUUU UAGUU UC cgu  u
|||  ||      ||||||| |||||   ||||||||||||| ||||| || |||   
guc  ua      guuuaaa acuuc   CAUUUUUUAGAGA GUCAA ag gca  g
   cu  uauaaa       c     aGA             A     A  u   gu 


mirna_id: cel-mir-256
hairpin:
-------gcaag        agg   a     agacgg   aga    cc    u 
            gagugcag   cuu cuaug      uca   ggcg  uccg c
            ||||||||   ||| |||||      |||   ||||  |||| a
            cucAUGUC   GAA GAUAC      GGU   cugc  aggu c
cauuuuaaaaaa        --A   -     --GUAA   ggg    au    g 


mirna_id: cel-mir-257
hairpin:
auaauauuucccg       --   -    -U  -C   U  u   cu         gg 
             cuGAGUA  UCA GGAG  AC  CAG GA cgc  ucacauauu  g
             |||||||  ||| ||||  ||  ||| || |||  |||||||||  a
             gacucau  agu ccuu  ug  guc cu gcg  aguguauga  a
------------g       gu   a    cu  ac   -  -   uu         ag 


mirna_id: cel-mir-258-1
hairpin:
gcaauGG     A -   AA          -      uugaa uu   g 
       UUUUG G AGG  UCCUUUUaca uauuug     g  uuc c
       ||||| | |||  |||||||||| ||||||     |  |||  
       gaagc c ucc  aggaagaugu auaagc     u  aag u
--guuuu     a g   ga          c      uggug uu   c 


mirna_id: cel-mir-259
hairpin:
---uc        --a       A        -  U    U   A   ucuuu 
     agucauug   aacgagu AAUCUCAU CC AAUC GGU Gca     c
     ||||||||   ||||||| |||||||| || |||| ||| |||      
     ucagugau   uuguuCA UUAGGGUA GG UUAG CCA Cgu     g
uuuuu        aaa       G        C  U    -   C   uccaa 


mirna_id: cel-mir-260
hairpin:
-c    aacaaaauua         aauuu  ua    g   uuugcuuuacca    g 
  guac          uugcgagag     uu  acau gcg            gguc a
  ||||          |||||||||     ||  |||| |||            ||||  
  uaug          GAUGUUCUC     AA  UGUA UGc            ucag u
uu    -gucuaacag         -----  GC    G   ----------ua    a 


mirna_id: cel-mir-261
hairpin:
ugauggcuuuucuggauuugu   --c     -   u    ag   c    aaaaaaaa 
                     ucc   uucac gug agaa  aaa gagc        u
                     |||   ||||| ||| ||||  ||| ||||        c
                     agg   aagug CAC UUUU  UUU UUCG        u
-----------------uuau   uau     G   -    GA   -    AUugugau 


mirna_id: cel-mir-262
hairpin:
gugcaaaauuguauuaaaaua   uu   ug  uu   -aaaa       ucaauuuuu 
                     aac  uau  ga  aca     aaaugua         c
                     |||  |||  ||  |||     |||||||         u
                     uug  aUA  CU  UGU     UUUGcau         u
------------ugacgaucg   uc   GU  UU   AGCUC       uuuuacuuu 


mirna_id: hsa-mir-200b
hairpin:
cca  uc    ag    g c    -    UG     C      u  ag 
   gc  gggc  ccgu g CAUC UUAC  GGCAG AUUGGA gg  u
   ||  ||||  |||| | |||| ||||  ||||| |||||| ||  c
   cg  cccg  ggcg c GUAG AAUG  CCGUC UAAUcu cu  a
gca  -u    -a    g A    U    GU     A      -  gg 


mirna_id: dme-mir-263a
hairpin:
uaga     g   a  UA   G     GA   AU       guaauu 
    ucucg cac GU  AUG CACUG  AGA  UCACggg      u
    ||||| ||| ||  ||| |||||  |||  |||||||      u
    agagc gug uA  UAC GUGAU  UCU  AGUGCcc      u
aaua     -   g  UC   G     UC   --       aacaua 


mirna_id: cel-mir-264
hairpin:
u   gg    -cga    u   --u      a   ug    -   c  u 
 ggc  cggu    caug aca   aucacc guc  gcuu uuc cg u
 |||  ||||    |||| |||   |||||| |||  |||| ||| ||  
 ccg  gcca    GUAU UGU   UGGUGG CGG  cgaa gag gc u
a   ag    uagg    -   UGU      G   --    c   c  c 


mirna_id: cel-mir-265
hairpin:
    ug cu    -    -      g ug     ----c    uu 
gguu  a  uacc cccu ccuucc c  gccgc     guuu  a
||||  |  |||| |||| |||||| |  |||||     ||||  u
ccaa  u  AUGG GGGA GGAGGG G  uggug     caag  u
    gu -U    U    A      A Uu     uaguu    ua 


mirna_id: cel-mir-266
hairpin:
u u  a  c             A                      a 
 g cu aa uugggcaaaaguu GGCAAGACUUUGGCAAAGCuug a
 | || || ||||||||||||| ||||||||||||||||||||||  
 c ga uu aacccguuuucaa ccguuuugaaaccguuuugaac u
a c  c  a             c                      c 


mirna_id: cel-mir-267
hairpin:
uaaaa     --       C      U   U      a    a   u 
     guuuc  aaaacCC GUGAAG GUC GCUGCA ucua auu u
     |||||  ||||||| |||||| ||| |||||| |||| |||  
     caagg  uuuuggg uacuuc cag ugacgu agau uag u
augcc     ac       u      u   c      -    a   a 


mirna_id: cel-mir-268
hairpin:
g    ug cuuu       C      U         UU    -uc  a 
 gaag  g    gaagcGG AAGAAU AGAAGCAGU  GGUg   ag c
 ||||  |    ||||||| |||||| |||||||||  ||||   || a
 uuuc  u    uuucguc uuuuug ucuucguca  ucac   uc c
u    gu --uc       u      u         -c    uca  a 


mirna_id: cel-mir-269
hairpin:
           g       CUC   -CA        a  uau   gc 
gggcaaaaguu GGCAAGA   UGG   AAACUugg uu   gcu  g
||||||||||| |||||||   |||   |||||||| ||   |||  c
ccuguuuuuaa cuguucu   acc   uuugaacc aa   uga  c
           a       -ca   cag        c  -uu   aa 


mirna_id: cel-mir-270
hairpin:
guc  u  -  -       c   c    -  --    uc       gugg 
   gc ag cc ucuuuac ugc uaca ca  ccuu  ugccuac    c
   || || || ||||||| ||| |||| ||  ||||  |||||||    a
   cg uc gg aGAGGUG ACG AUGU GU  GGga  acggaug    c
cac  -  a  u       -   -    A  AC    ga       guua 


mirna_id: cel-mir-271
hairpin:
aauagaaaac    cc     gc    C    G         -  gac 
          gggg  cgccg  UCGC GGGU GGAAAGCAU Uc   a
          ||||  |||||  |||| |||| ||||||||| ||    
          cccu  gcggc  agcg ucua cuuuuugug ag   g
-ucacuacua    ua     uc    -    a         c  aac 


mirna_id: cel-mir-272
hairpin:
      - --a  u   gg     ag   gg   ag   c      aag 
cgcagg c   cg gca  uaugu  gca  cgu  gcc guaggc   u
|||||| |   || |||  |||||  |||  |||  ||| ||||||    
gcgucc g   GU UGU  GUACG  UGU  gua  cgg cgucug   g
      a aag  U   GG     GA   aa   --   a      gau 


mirna_id: cel-mir-273
hairpin:
   -uc     g              uu       u    uuuuuuu 
acc   guuuu ggagcagccggcau  uacgggc acac       a
|||   ||||| ||||||||||||||  ||||||| ||||        
ugg   uaaaa uuucGUCGGCUGUG  AUGCCCG Ugug       a
   cuu     g              UC       -    uaguuaa 


mirna_id: dme-mir-184
hairpin:
gguuggcc    c  u  ua         -     U  -  CCG   gcac 
        ggug au cg  cCCUUAUCA UUCUC CG CC   ugu    u
        |||| || ||  ||||||||| ||||| || ||   |||     
        ccac ua gc  GGGAAUAGU AAGAG GC GG   aca    u
cuacuuaa    -  u  uC         C     -  A  Uca   gaaa 


mirna_id: dme-mir-274
hairpin:
uccug              --       C  A  CU           gu      
     uguugcaguuucgU  UUUGUGA CG CA  AACGGGUAAUu  uuggc 
     ||||||||||||||  ||||||| || ||  |||||||||||  |||| c
     acgacguuaaaguA  AAACACU GC GU  UUGCUCauuag  gaccg 
----a              UU       A  -  UU           --      


mirna_id: dme-mir-275
hairpin:
uguaaa    c     u         -A    UG   GG     guuuu 
      gucu cuacc ugCGCGCUA  UCAG  ACC  GGCUg     u
      |||| ||||| |||||||||  ||||  |||  |||||      
      caga ggugg GCGCGCGAU  AGUC  UGG  CUgac     u
uauaua    c     u         GA    CA   -A     auaua 


mirna_id: dme-mir-92a
hairpin:
-----aa  ug   uu        A     -     U   C    -ug a 
       ua  aau  cccguAGG CGGGA AGGUG CAA GUUu   c u
       ||  |||  |||||||| ||||| ||||| ||| ||||   | u
       au  uug  gggUAUCC GCCCU UUCAC GUU Caaa   g u
acaaaua  gu   gc        G     G     -   A    uaa c 


mirna_id: dme-mir-219
hairpin:
---ua    -g     u   ua    U     AA           ----   a 
     auuc  auuuu agc  UGAU GUCCA  CGCAAUUCUUG    uug u
     ||||  ||||| |||  |||| |||||  |||||||||||    ||| a
     uaag  uaaag ucg  GCUA CGGGU  GCGUUGGGAac    aac u
caaca    aa     c   GC    -     CA           uuau   u 


mirna_id: dme-mir-276a
hairpin:
-----------cc      uug   uC    A     AG          uucau 
             ugguuu   cca  AGCG GGUAU  AGUUCCUACG     u
             ||||||   |||  |||| |||||  ||||||||||     a
             accaga   ggu  UCGU CCAUA  UCAAGGAUgc     u
gaaccaacaaaaa      --a   UC    G     CU          ucaaa 


mirna_id: dme-mir-277
hairpin:
----   a g       gc  -   GU    -            c  aaa u 
    uug a guuuugg  ug CGU  CAGG AGUGCAUUUGCA ug   c a
    ||| | |||||||  || |||  |||| |||||||||||| ||   | u
    aac u caagacc  AC GCA  GUCU UCACGUAAAUgu ac   g c
uucu   a g       uu  A   UG    A            -  gaa u 


mirna_id: dme-mir-278
hairpin:
-------gu      acgg     C       U     A  A     g   ca 
         aauggu    ugcga CGGAUGA GGUUC CA CGACC ugu  u
         ||||||    ||||| ||||||| ||||| || ||||| |||  u
         uuaccg    augUU GCCUGCU UCAGG GU GCUgg gca  u
agcaacugu      --ca     U       U     -  G     -   aa 


mirna_id: dme-mir-133
hairpin:
---accug    -    ug             CAUC  GU     -  guu 
        caac acug  uguAGCUGGUUGA    GG  CAGAU cu   u
        |||| ||||  |||||||||||||    ||  ||||| ||    
        guug ugac  aUGUCGACCAACU    CC  GUUua ga   u
caacagua    g    cg             -UCC  UG     c  acu 


mirna_id: dme-mir-279
hairpin:
ggaauucau         u          G     C  UGUU     uug   u 
         acuacuguu uuAGUGGGUG GGGUC AG    UCACA   auu u
         ||||||||| |||||||||| ||||| ||    |||||   ||| c
         ugauggcaa AAUUACUCAC CCUAG UC    AGUgu   uga u
-------cu         u          A     A  ----     uua   u 


mirna_id: dme-mir-33
hairpin:
cucuuccucug      a    a  -G       U   C C        ucc a 
           gagaug cacg ag  UGCAUUG AGU G AUUGUCug   c a
           |||||| |||| ||  ||||||| ||| | ||||||||   |  
           cuuuac gugu UC  ACGUGAC UCA C UAACggac   g u
---------ca      -    c  GA       U   A A        uuc u 


mirna_id: dme-mir-280
hairpin:
---------u      --ua     U   G                --A      
          ggcuuu    UGUAU UAC UUGCAUAUGAAAUGAU   uuuau 
          ||||||    ||||| ||| ||||||||||||||||   |||| a
          cuggag    acgua aug gacguauauuuuauua   aaaug 
gucacaccuc      cuga     u   -                gac      


mirna_id: dme-mir-281-1
hairpin:
      ag  a           -UG     C      ccagaaac 
cgaaua  ug auaAAGAGAGC   UCCGU GACAGU        u
||||||  || |||||||||||   ||||| ||||||        a
gcuuau  au UGUUUCUCUCG   AGGUA CUGUca        u
      -a  a           UUA     -      cuauaauu 


mirna_id: dme-mir-282
hairpin:
a    -    -cuaa           AC      U      Ugcau   a 
 guuu ccuu     aucUAGCCUCU  UAGGCU UGUCUG     ucg a
 |||| ||||     |||||||||||  |||||| ||||||     ||| a
 caag ggaa     uGGAUUGGAGA  AUCCGA ACAgac     agc g
a    c    ccaug           AU      U      ----u   c 


mirna_id: dme-mir-283
hairpin:
cucacac     uc      AA           U         agcuaagccu 
       gauuc  aaaggu  AUAUCAGCUGG AAUUCUGGg          a
       |||||  ||||||  ||||||||||| |||||||||           
       uuaag  uuuucA  UAUGGUUGACU UUAAGGCuc          a
-------     uu      GC           -         acaaaguaua 


mirna_id: dme-mir-284
hairpin:
----         C              A   UGUAGCCugugagggcaag 
    guugcaguu CUGGAAUUAAGUUG CUG                   g
    ||||||||| |||||||||||||| |||                   c
    cggcGUUAA GACCUUAGUUCAAC GAC                   u
agcc         C              -   UGAAGUccucguaauaagu 


mirna_id: dme-mir-281-2
hairpin:
     u  gaa ug        -UA     C      ---ca    aa 
cgaau gu   a  AAGAGAGC   UCCGU GACAGU     aguu  g
||||| ||   |  ||||||||   ||||| ||||||     ||||   
gcuua ca   U  UUCUCUCG   AGGUA CUGUca     uuag  a
     -  aua GU        UUA     -      uaaug    cc 


mirna_id: dme-mir-34
hairpin:
aauug   a  -   uu        U  U   C        --ua c    ua 
     gcu ug cgc  UGGCAGUG GG UAG UGGUUGUG    g caau  u
     ||| || |||  |||||||| || ||| ||||||||    | ||||  u
     cga ac gcg  GCCGUCAC UC AUC ACCGACac    c guug  g
-----   -  a   CC        U  U   -        uuaa a    cc 


mirna_id: dme-mir-124
hairpin:
---ucauuuggua     uu   c      C      AG    A    uau 
             cguuu  cuc uGGUAU CACUGU  GCCU UAUG   u
             |||||  ||| |||||| ||||||  |||| ||||   u
             gcaag  gaG ACCGUA GUGGCG  CGGA AUac   c
uaaacaucuugac     -c   A      A      CA    -    cac 


mirna_id: dme-mir-79
hairpin:
u  ag   -acuu    u        CGC       G     --   au 
 ga  cug     gcca uGCUUUGG   UUUAGCU UAUGA  uag  u
 ||  |||     |||| ||||||||   ||||||| |||||  |||  u
 cu  gac     cggu ACGAAACC   AGAUCGA AUacu  auc  a
a  -g   gucuu    U        AUU       A     uc   aa 


mirna_id: dme-mir-276b
hairpin:
aaaac   -      uuua   uC    A     A           uuc  au 
     cga agucuu    cca  AGCG GGUAU GAGUUCCUACG   cu  a
     ||| ||||||    |||  |||| ||||| |||||||||||   ||   
     gcu ucagga    ggu  UCGU CCAUA UUCAAGGAUgc   ga  u
--cca   g      ----   UC    G     A           --u  cu 


mirna_id: dme-mir-210
hairpin:
------------aaa   -g     ugc        GC   -         Uuaga 
               ggu  cuuau   AGCUGCUG  CAC UGCACAAGA     c
               |||  |||||   ||||||||  ||| |||||||||     u
               ccg  gaaug   UCGGCGAC  GUG GCGUGUUcu     u
ccgacaacgaagaua   ga     uuA        -A   U         cagaa 


mirna_id: dme-mir-285
hairpin:
---  ga       -a     GA    U      A    --uaucag   aa 
   uc  aucgaag  ACUGA  UCGA UGGUGC UAGA        gag  c
   ||  |||||||  |||||  |||| |||||| ||||        |||   
   ag  uaguuuu  UGACU  AGCU ACCACG AUcu        cuc  c
caa  aa       CG     AA    U      -    caauuuaa   ac 


mirna_id: dme-mir-100
hairpin:
-------------------c    a     AA       AU   AA      - u uuu 
                    cauu acaga  CCCGUAA  CCG  CUUGUG c g   u
                    |||| |||||  |||||||  |||  |||||| | |    
                    guaa uguCU  GGGUAUU  GGC  GAACau g c   a
acgguuuuuggucaacaaac    c     GA       AC   CA      u u uau 


mirna_id: dme-mir-92b
hairpin:
---uaaaa  u   cu a         U C C     UU      --ug au 
        cg cac  g uguAGGCCG G C AGUGC  AUUUGu    c  u
        || |||  | ||||||||| | | |||||  ||||||    |   
        gc gug  u aCGUCCGGC C G UCACG  UAAaca    g  u
cagcugac  u   ag a         C U A     -U      uaaa cu 


mirna_id: dme-mir-286
hairpin:
---         aauG    A   -    A     UCUuuuucaaagaaag 
   uuaaaauug    GCGA UGU CGGU UGGUC                g
   |||||||||    |||| ||| |||| |||||                 
   aauuuuaau    UGCU ACA GCCA AUCAG                u
uaa         aUCG    C   A    G     Ugaagcgaauuagcuu 


mirna_id: dme-mir-287
hairpin:
ggacgccggggauguaugggugug  g    -  -    --   -gc           a 
                        ua gguc ug aaau  uuu   acacauuuaca u
                        || |||| || ||||  |||   ||||||||||| a
                        gu ucag AC UUUG  AAA   UGUGUaaaugu a
-----------------------a  g    C  G    CU   AGU           u 


mirna_id: dme-mir-87
hairpin:
-----          auU        -U  C     G     ------cu   a 
     aacacauuuc   CGCGCCUG  AU UUGCU AACcg        gcc u
     ||||||||||   ||||||||  || ||||| |||||        ||| u
     uuguguaaag   GUGUGGAC  UA AACGA UUggc        cgg a
acgau          agu        UU  A     G     cuagcaac   u 


mirna_id: dme-mir-263b
hairpin:
uu    -ac       C        G G     U     -u   c 
  gcug   uuugagu UUGGCACU G AGAAU CACag  uga u
  ||||   ||||||| |||||||| | ||||| |||||  ||| u
  cggc   aaauuCA AACCGUGG C UCUUG GUGuc  auu u
uu    caa       A        G G     -     uu   a 


mirna_id: dme-mir-288
hairpin:
     a      aauuagcg   ca      --c       auaauuaa    g 
cggcc ugucgu        gag  cggcau   gccggcg        ugac g
||||| ||||||        |||  ||||||   |||||||        ||||  
gccgg acaGUA        CUU  GCUGUA   Ugguugc        acug u
     c      ---CUUUA   UA      CUU       --------    g 


mirna_id: dme-mir-289
hairpin:
-gag     a  -aa      UA         --A    G  ACU      c 
    uuuac gu   aaUAAA  UUUAAGUGG   GCCU CG   ucaguc c
    ||||| ||   ||||||  |||||||||   |||| ||   |||||| u
    aaaug ca   uuguuu  gaguucacu   uggg gu   agucag c
caga     -  cgg      gc         gaa    -  --c      u 


mirna_id: dme-bantam
hairpin:
au     uac    C          UU      G   -  uu 
  uugac   gaaa CGGUUUUCGA  UGGUUU ACU gu  u
  |||||   |||| ||||||||||  |||||| ||| ||  u
  aacug   uuUU GUCGAAAGUU  ACUAGA Uga ca  c
--     ---    A          UU      G   a  ua 


mirna_id: mmu-mir-290
hairpin:
    u  u    uA  -C      U  G          uuu 
cuca cu gcgg  CU  AAACUA GG GGCACUUUuu   u
|||| || ||||  ||  |||||| || ||||||||||   u
gagu gg cgcC  GA  UUUGAU CC CCGUGAAAaa   c
    u  c    CC  AU      -  G          uuu 


mirna_id: mmu-mir-291a
hairpin:
         c   -  U            C  C    gagc 
ccuauguag ggc CA CAAAGUGGAGGC CU UCUu    c
||||||||| ||| || |||||||||||| || ||||     
ggguacguc cCG GU GUUUCACCUUCG GA Agag    u
         a   U  -            U  A    uaag 


mirna_id: mmu-mir-292
hairpin:
     u           --A    G   U    UGga     a 
cagcc gugauACUCAA   CUGG GGC CUUU    uuuuc u
||||| |||||||||||   |||| ||| ||||    |||||  
guugg cacUGUGAGUU   GACC CCG GAAA    agaag c
     c           UUG    G   U    ----     g 


mirna_id: mmu-mir-293
hairpin:
u      u  gg    -      G    A      Guuc 
 ucaauc gu  uACU CAAACU UGUG CAUUUU    u
 |||||| ||  |||| |||||| |||| ||||||    u
 aguuag cg  GUGA GUUUGA ACGC GUGAag    u
g      c  uU    U      G    C      aaug 


mirna_id: mmu-mir-294
hairpin:
u       a  c    U     U      C  A   aa   u 
 uccauau gc auAC CAAAA GGAGGC CU UCU  gcu u
 ||||||| || |||| ||||| |||||| || |||  |||  
 aggugua cg UGUG GUUUU CCUUCG GA Agg  uga u
g       c  u    U     C      U  A   --   a 


mirna_id: mmu-mir-295
hairpin:
  u          U    -     AC     gac 
gg gagACUCAAA GUGG GGCAC  UUCug   u
|| |||||||||| |||| |||||  |||||   g
cc cUCUGAGUUU CAUC UCGUG  AAgau   u
  u          U    A     -A     aca 


mirna_id: mmu-mir-296
hairpin:
    -     u        C  C         G   -u c 
gggc cuuuc ggAGGGCC CC CUCAAUCCU Uug  g u
|||| ||||| |||||||| || ||||||||| |||  |  
ccug ggaag CCUCUCGG GG GGGUUGGGA Gac  c c
    u     u        A  U         -   uu g 


mirna_id: mmu-mir-297a-1
hairpin:
             u       UG    -        Ug 
auauguauguaug AUGUAUG  UGCA UGUGCAUG  c
||||||||||||| |||||||  |||| ||||||||   
uguacauacguau uauauau  acgu auacguau  a
             -       gu    u        gu 


mirna_id: mmu-mir-297a-2
hairpin:
----c       au    A      --C      AU           ag 
     ugugugu  AUGU UGUGUG   AUGUGC  GUguguauaug  u
     |||||||  |||| ||||||   ||||||  |||||||||||   
     acacacg  uacg acauac   uacacg  cauacauauac  a
cccaa       --    a      cca      --           au 


mirna_id: mmu-mir-298
hairpin:
   gg   uu   A   -       -         uug    u 
cca  ccu  GGC GAG GAGGGCU GUUCUUCCC   aguu u
|||  |||  ||| ||| ||||||| |||||||||   ||||  
ggu  gga  uCG CUC CUUCCGA CAAGGAGgg   ucag a
   ga   -u   A   U       U         ---    u 


mirna_id: mmu-mir-299a
hairpin:
     a                      uu 
aagaa UGGUUUACCGUCCCACAUACAU  u
||||| ||||||||||||||||||||||  g
uucUU GCCAAAUGGCAGGGUGUAUgua  a
     C                      ug 


mirna_id: mmu-mir-300
hairpin:
   a           G  AU             gc   a 
gcu cUUGAAGAGAG UU  CCUUUGUguguuu  uuu c
||| ||||||||||| ||  |||||||||||||  |||  
cga gagCUUCUCUC AA  GGGAACGUAUaag  aag g
   g           G  -C             ua   c 


mirna_id: mmu-mir-301a
hairpin:
      aa   c    C    ---U          ----A       
ccugcu  cgg uGCU UGAC    UUAUUGCACU     CUguac 
||||||  ||| |||| ||||    ||||||||||     ||||| u
ggacga  gcc aCGA ACUG    GAUAACGUGA     gacauu 
      gc   u    A    UUAU          Cgagc       


mirna_id: mmu-mir-302a
hairpin:
   c    U        UU           aga 
cca cACU AAACGUGG  GUACUUGCuuu   c
||| |||| ||||||||  |||||||||||   c
ggu GUGG UUUGUACC  CGUGAAUgaaa   u
   A    U        UU           gaa 


mirna_id: mmu-mir-34c
hairpin:
     ag     A   A    A     C      C  a 
agucu  uuacu GGC GUGU GUUAG UGAUUG ua u
|||||  ||||| ||| |||| ||||| |||||| ||  
ucaga  aauGG CCG CACA CAAUC ACUAAc au a
     aa     A   A    C     -      c  g 


mirna_id: mmu-mir-34b
hairpin:
     cg    -guA       UAA    C       -   g 
gugcu  guuu    GGCAGUG   UUAG UGAUUGU agu c
|||||  ||||    |||||||   |||| ||||||| ||| g
cacgg  caaa    CCGUCAC   AAUC ACUAAca ucg g
     aa    aCUA       CUC    -       g   u 


mirna_id: mmu-let-7d
hairpin:
      uu       A              C      -------uua         
aauggg  ccuagga GAGGUAGUAGGUUG AUAGUU          gggcagag 
||||||  ||||||| |||||||||||||| ||||||          ||||||| a
uuauuc  ggauUCU UUCCGUCGUCCAGC UAUCaa          cccguuuu 
      cg       -              A      uugaggaaca         


mirna_id: mmu-mir-106a
hairpin:
    -CA       AA  G     -GU       
augu   AAGUGCU  CA UGCAG   AGcuuu 
||||   |||||||  || |||||   ||||| u
uaCA   UUCACGA  GU ACGUC   uugagu 
    UUC       CC  G     Auc       


mirna_id: mmu-mir-106b
hairpin:
        ga -UA       G       AGAUa    uc u 
ccugcugg  c   AAGUGCU ACAGUGC     gugg  c c
||||||||  |   ||||||| |||||||     ||||  | u
ggacgacc  G   UUCAUGG UGUCACG     Cauc  g c
        uC UCG       G       ----C    gu u 


mirna_id: mmu-mir-130b
hairpin:
      u    cA       CC         A  guggg  u 
ggcuug ugga  CUCUUUC  UGUUGCACU CU     cc c
|||||| ||||  |||||||  ||||||||| ||     ||  
ccgggc gucU  GGGAAAG  GUAACGUGA ga     gg u
      u    AC       UA         C  ----a  g 


mirna_id: dme-mir-303
hairpin:
        UA     C C             aau 
ucuuggUU  GGUUU A AGGAAACUGGUuu   a
||||||||  ||||| | |||||||||||||    
agaacuAA  CUAAA U UCCUUUGAUCaaa   a
        UC     A C             agc 


mirna_id: dme-mir-31b
hairpin:
    -     aau     A     UC  A       agagcacagcggaucgaacauuuuauc 
caaa uaaug   uUGGC AGAUG  GG AUAGCUG                           g
|||| |||||   ||||| |||||  || |||||||                           u
guuu auuac   AACUG UCUAC  CC UAUCGGc                           c
    c     guU     A     -U  G       gaaaaguuuuuauuaguguaaaaaagc 


mirna_id: dme-mir-304
hairpin:
    ca    a       AAU       U     c -   u  g 
gcag  uuga UAAUCUC   UUGUAAA GUGAG g guu aa c
||||  |||| |||||||   ||||||| ||||| | ||| ||  
cguc  agcU GUUAGAG   AACGUUU CACuc c cag uu c
    ag    C       GUU       -     a g   u  a 


mirna_id: dme-mir-305
hairpin:
     cu U         U  G     CU  u  guc 
caugu  A UGUACUUCA CA GUGCU  Gg gu   u
|||||  | ||||||||| || |||||  || ||    
guaua  U ACAUGAAGU GU CACGG  Cc ca   c
     AC C         U  A     --  -  aug 


mirna_id: dme-mir-9c
hairpin:
    uu    uuU         UCU    G     u  uuc   c 
auuu  gcug   CUUUGGUAU   AGCU UAGAu gu   acg a
||||  ||||   |||||||||   |||| ||||| ||   ||| c
uaaa  cgac   GAAACCAUA   UCGA AUcua ua   ugu a
    uu    CUC         UUU    A     c  -ua   u 


mirna_id: dme-mir-306
hairpin:
-g      c au   U       UU           --   - u 
  uccacu g  ggc CAGGUAC  AGUGACUCUCA  Aug c u
  |||||| |  ||| |||||||  |||||||||||  ||| |  
  ggguga c  uCG GUCCGUG  UCACUGGGGGu  uac g u
ca      - cg   U       UC           uu   a u 


mirna_id: dme-mir-9b
hairpin:
u   --u        cUC         UUU    G     u  uua 
 gca   auuauuug   UUUGGUGAU   AGCU UAUGg gu   u
 |||   ||||||||   |||||||||   |||| ||||| ||    
 cgu   ugguaaaC   AAACCAUUA   UCGA AUacc ua   g
a   cuu        CAA         -UU    G     u  uau 


mirna_id: dme-let-7
hairpin:
  u      uU   G     G           guaauu 
uc ggcaaa  GAG UAGUA GUUGUAUAGUa      a
|| ||||||  ||| ||||| |||||||||||       
ag ucguuU  UUC AUCGU UAACAUAUCau      c
  u      CU   G     G           acuaca 


mirna_id: dme-mir-125
hairpin:
     gu    au      augg ug  UC  U    C CU         cu  ua 
gacau  gcaa  guuugu    c  au  CC GAGA C  AACUUGUGA  uu  a
|||||  ||||  ||||||    |  ||  || |||| |  |||||||||  ||  u
uugua  cguu  caaacg    g  UA  GG CUCU G  UUGAACAcu  ga  a
     gu    --      --ca gu  -U  C    A UU         uu  cc 


mirna_id: dme-mir-307a
hairpin:
u        -   A         CCU  G       -u    uc 
 gucuugcu uug CUCACUCAA   GG UGUGAUg  uauu  g
 |||||||| ||| |||||||||   || |||||||  ||||  a
 caggacga agc GAGUGAGUU   CC ACACUac  augg  u
a        u   -         CCU  A       cu    ua 


mirna_id: dme-mir-308
hairpin:
           U       U    uu c u 
cuCGCAGUAUA UUUUGUG UUUG  u g u
||||||||||| ||||||| ||||  | | u
GAGUGUCAUAU AGGACAC AAac  a c u
           U       U    cu a g 


mirna_id: dme-mir-31a
hairpin:
        ua       A     U         UGAcguugaaaa 
uccguugg  aauUGGC AGAUG CGGCAUAGC            g
||||||||  ||||||| ||||| |||||||||            c
agguaacu  uUGACUG UCUAC GUCGUAUCG            g
        ug       A     -         Cgagaaguuuua 


mirna_id: dme-mir-309
hairpin:
      C       C   UU    U   c aau 
auuaua GACAAAC UUG  CGGU UUG c   u
|||||| ||||||| |||  |||| ||| |   u
uaauAU CUGUUUG AAU  GUCA Gac g   c
      C       A   GG    C   c aac 


mirna_id: dme-mir-310
hairpin:
     -aa       c   G    UC     U       u   u 
aacau   acauuug AGG CGGG  GUGUG CAGUGUA uua a
|||||   ||||||| ||| ||||  ||||| ||||||| ||| u
uugua   uguaaaU UCC GCCC  CACAC GUUAUau gau c
     acc       U   G    UU     -       c   u 


mirna_id: dme-mir-311
hairpin:
   a   cau       -A    AU   G  U     -   au 
ucu gau   uuuuCGG  CGGU  AUG GU AAUAU Uuc  u
||| |||   |||||||  ||||  ||| || ||||| |||  u
aga cua   aaaAGUC  GCCA  UAC CG UUAUa aag  g
   a   --u       CG    CU   A  -     u   cu 


mirna_id: dme-mir-312
hairpin:
    U   U    A    G     U   cauu 
gauu GGU CGUC CAAG GCAAU CUg    u
|||| ||| |||| |||| ||||| |||    u
uuAG CCG GCAG GUUC CGUUA gau    u
    U   -    A    A     U   caau 


mirna_id: dme-mir-313
hairpin:
      -U    C   U  GG        ----   u 
auuuuc  GCUG GGA GG  GCAGUACU    guu u
||||||  |||| ||| ||  ||||||||    ||| u
uaaaAG  CGAC CUU UC  CGUUAUga    caa u
      CC    A   U  -A        guua   u 


mirna_id: dme-mir-314
hairpin:
u  U       G     U    CU    uaguu    ---a   c   ca 
 cG AACUUGU UGGCU CGAA  UACC     gagg    aaa ucc  u
 || ||||||| ||||| ||||  ||||     ||||    ||| |||   
 GC UUGAAUA ACCGA GCUU  AUgg     cucc    uuu agg  g
G  -       -     -    --    ----u    auug   u   cu 


mirna_id: dme-mir-315
hairpin:
       auaa   UG          A       cuc    u 
cacuuau    UUU  AUUGUUGCUC GAAAGCc   auug u
|||||||    |||  |||||||||| |||||||   |||| u
gugaaua    AAA  UAAUAACGAG CUUUCgg   ugac a
       gaCC   GU          -       --u    c 


mirna_id: dme-mir-316
hairpin:
      -    c   u           G   -A   G    ucaa 
aaauuc uagu gau UGUCUUUUUCC CUU  CUG CGuu    u
|||||| |||| ||| ||||||||||| |||  ||| ||||     
uuugag auca uuA GCGGAAAAAGG GAA  GAC gcaa    u
      u    u   U           -   AG   A    cacc 


mirna_id: dme-mir-317
hairpin:
    --a  u         AUA    --     C      u aa  a 
augc   ac gccauUGGG   CACC  CUGUG UCGCUu g  ug a
||||   || |||||||||   ||||  ||||| |||||| |  || a
uacg   ug cggUGACCU   GUGG  GACAC AGUgaa c  ac u
    guu  c         AUG    UC     A      - ga  g 


mirna_id: dme-mir-318
hairpin:
u          C   C        UU   caca 
 uuaugGGAUA ACA AGUUCAGU  UGu    c
 |||||||||| ||| ||||||||  |||     
 aguACUCUAU UGU UCGGGUCA  acg    u
g          U   U        CU   aacu 


mirna_id: dme-mir-2c
hairpin:
    au    c  u       -      AAG     AAGAAAGAUauuucu 
ucgu  cuua uu caaugUC AUCAAA   GGCUG               g
||||  |||| || ||||||| ||||||   |||||                
agcg  gagu aa guuaCGG UAGUUU   CCGAC               c
    ac    -  c       G      CGA     ACUAUgcuaaguuua 


mirna_id: dme-mir-iab-4
hairpin:
    -aa            U    C   Ag  u 
ucgu   ACGUAUACUGAA GUAU CUG  ug a
||||   |||||||||||| |||| |||  || u
agca   UGCAUAUGACUU CAUA GGC  au c
    CAA            C    U   cu  c 


mirna_id: hsa-let-7g
hairpin:
a   U        A            ugagg    -a  a    a 
 ggc GAGGUAGU GUUUGUACAGUU     gucu  ug uacc c
 ||| |||||||| ||||||||||||     ||||  || ||||  
 cCG UUCCGUCA CGGACAUGUCaa     uaga  ac augg c
a   -        C            -----    gg  -    c 


mirna_id: hsa-let-7i
hairpin:
c    U                 U   --------  u     ugu 
 uggc GAGGUAGUAGUUUGUGC GUU        gg cgggu   g
 |||| ||||||||||||||||| |||        || |||||   a
 aUCG UUCCGUCAUCGAACGCG Caa        uc gcccg   c
-    -                 U   uagaggug  -     uua 


mirna_id: hsa-mir-1-2
hairpin:
a      c                     ac     ugaaca 
 ccuacu agaguacauacuucuuuaugu  ccaua      u
 |||||| |||||||||||||||||||||  |||||       
 ggaugg uuuUAUGUAUGAAGAAAUGUA  GGUau      a
c      u                     -A     cguaac 


mirna_id: hsa-mir-15b
hairpin:
u    --g       gua   U       C  C      UA   g  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUU  CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||  ||| ||  g
 acuu   ggaauuu   gAU UCGUCGU UA UACUAA  gua ga  u
u    aaa       aaa   C       U  U      GC   -  ac 


mirna_id: hsa-mir-23b
hairpin:
c     u c  -   c   u   --          -  C      gugacu 
 ucagg g uc ugg ugc UGG  GUUCCUGGCA UG UGAUUU      u
 ||||| | || ||| ||| |||  |||||||||| || ||||||       
 gguuc c ag acc acg aCC  UAGGGACCGU AC ACUAaa      a
c     - -  c   a   c   AU          U  -      auuaga 


mirna_id: hsa-mir-27b
hairpin:
-    -    aaca                  AUUG        ugau     
 accu cucu    aggugcAGAGCUUAGCUG    GUGAACag    uggu 
 |||| ||||    ||||||||||||||||||    ||||||||    ||| u
 ugga gaga    uccaCGUCUUGAAUCGGU    CACUUguu    gccu 
g    a    --ag                  --GA        --uc     


mirna_id: hsa-mir-30b
hairpin:
a     uu      caU          U  -A        uaaua 
 ccaag  ucaguu   GUAAACAUCC AC  CUCAGCUg     c
 |||||  ||||||   |||||||||| ||  ||||||||      
 gguuc  agucga   CAUUUGUAGG UG  GGGUCggu     a
a     --      CUU          -  GA        uaggu 


mirna_id: hsa-mir-122
hairpin:
c        -      GG       C           --u  c 
 cuuagcag agcugU  AGUGUGA AAUGGUGUUUG   gu u
 |||||||| ||||||  ||||||| |||||||||||   ||  
 ggaucguc ucgAUA  UCACACU UUACCGCAAac   ca a
c        a      AA       A           uau  a 


mirna_id: hsa-mir-124-1
hairpin:
a      uc   cC        A   GA        uaaau 
 ggccuc  ucu  GUGUUCAC GCG  CCUUGAUu     g
 ||||||  |||  |||||||| |||  ||||||||     u
 ucgggg  aga  CGUAAGUG CGC  GGAAUuaa     c
g      ua   aC        G   AC        cauac 


mirna_id: hsa-mir-124-2
hairpin:
a     au   ----            cC        A   GA        uaau 
 ucaag  uag    aggcucugcucu  GUGUUCAC GCG  CCUUGAUu    g
 |||||  |||    ||||||||||||  |||||||| |||  ||||||||    u
 aguuc  guc    uccgaggcgaga  CGUAAGUG CGC  GGAAUuaa    c
a     ac   ggca            aC        G   AC        caua 


mirna_id: hsa-mir-124-3
hairpin:
u    -   c    - C        A   GA        uaaug 
 gagg gcc cucu g GUGUUCAC GCG  CCUUGAUu     u
 |||| ||| |||| | |||||||| |||  ||||||||      
 cucc cgg gaga C CGUAAGUG CGC  GGAAUuaa     c
c    g   a    a -        G   AC        cauau 


mirna_id: hsa-mir-125b-1
hairpin:
u    uc   u   UC  UG   C           Au     c 
 gcgc  cuc cag  CC  AGA CCUAACUUGUG  guuua c
 ||||  ||| |||  ||  ||| |||||||||||  ||||| g
 cgug  gag gUC  GG  UCU GGAUUGGGCAc  uaaau u
u    cu   c   GA  GU   C           -c     u 


mirna_id: hsa-mir-128-1
hairpin:
u    u      uuc       uag      cu       u 
 gagc guugga   ggggccg   cacugu  gagaggu u
 |||| ||||||   |||||||   ||||||  |||||||  
 uucg cgacuu   CUCUGGC   GUGACA  CUcuuua a
c    u      UUU       CAA      --       c 


mirna_id: hsa-mir-130a
hairpin:
u     -       a        C      UG  A   UCU  a 
 gcugc uggccag gcucuuUU ACAUUG  CU CUG   GC c
 ||||| ||||||| |||||||| ||||||  || |||   ||  
 ugaug gccgguU CGGGAAAA UGUAAC  GA gau   ug c
g     u       A        U      GU  C   cac  u 


mirna_id: hsa-mir-132
hairpin:
c   cccc    -  c a    a         UUC          --gu g 
 cgc    gcgu cu c gggc ACCGUGGCU   GAUUGUUACU    g g
 |||    |||| || | |||| |||||||||   ||||||||||    |  
 gcg    cgca ga g cccG UGGUACCGA   CUGACAAUgg    c a
c   cacc    c  c c    C         CAU          aggu a 


mirna_id: hsa-mir-133a-1
hairpin:
a      uuu    g       aa  u  a        gccuc 
 caaugc   gcua agcuggu  aa gg accaaauc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgau UCGACCA  UU CC UGGUUUag     u
a      uau    G       AC  C  C        guaac 


mirna_id: hsa-mir-133a-2
hairpin:
g  a    --     uuu    g       aa  u  a        g cug 
 gg gcca  aaugc   gcua agcuggu  aa gg accaaauc a   u
 || ||||  |||||   |||| |||||||  || || |||||||| |    
 cc cggu  uuacg   cgau UCGACCA  UU CC UGGUUUag u   c
g  g    ag     ugu    G       AC  C  C        g aac 


mirna_id: hsa-mir-135a-1
hairpin:
a g         u u          UU            uucua 
 g ccucgcugu c cUAUGGCUUU  AUUCCUAUGUGA     c
 | ||||||||| | ||||||||||  ||||||||||||     u
 c ggggcggca G GGUGCCGAGG  UAGGGAUAUacu     g
a a         c C          -U            cacuc 


mirna_id: hsa-mir-135a-2
hairpin:
a   aaa     ucua   c            U            u g a 
 gau   uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    ||| |||||||||||| |||||||||||| | | u
 cua   aagug    cau aaguaccgaagg uagggauguacu u a a
a   -aa     -uua   a            -            c g a 


mirna_id: hsa-mir-137
hairpin:
g u  u   --           ug   g           ug a     -  g 
 g cc cug  acucucuucgg  acg guauucuuggg  g uaaua cg a
 | || |||  |||||||||||  ||| |||||||||||  | ||||| || u
 c gg gac  ugagaggagcu  UGC CAUAAGAAUUC  U AUUgu gc u
a -  c   ca           GA   G           GU -     u  a 


mirna_id: hsa-mir-138-2
hairpin:
c u   u  AG             UCA     -ac   c  cg 
 g ugc gc  CUGGUGUUGUGAA   GGCCG   gag ag  c
 | ||| ||  |||||||||||||   |||||   ||| ||   
 c acg UG  GACCACAGCACUU   UCGgc   uuc uc  a
a u   U  -G             -UA     cca   -  cu 


mirna_id: hsa-mir-140
hairpin:
u       ucucu        -  A             A       uu   uc 
 gugucuc     guguccug cC GUGGUUUUACCCU UGGUAGg  acg  a
 |||||||     |||||||| || ||||||||||||| |||||||  |||   
 cacgggg     cauaggac GG CACCAAGAUGGGA ACCAUcu  ugu  u
c       ----c        a  -             C       --   cg 


mirna_id: hsa-mir-141
hairpin:
c    g    u   -u       --    U        -   ugg  ua 
 ggcc gccc ggg  cCAUCUU  CCAG ACAGUGUU GGA   uc  a
 |||| |||| |||  |||||||  |||| |||||||| |||   ||  u
 uugg uggg ccc  GGUAGAA  GGUC UGUCACAA ccu   ag  u
c    g    -   uc       AU    -        U   cga  ug 


mirna_id: hsa-mir-142
hairpin:
g        g   c           A         Uaa ag a 
 acagugca uca cCAUAAAGUAG AAGCACUAC   c  c c
 |||||||| ||| ||||||||||| |||||||||   |  |  
 ugucaugu agu GGUAUUUCAUC UUUGUGAUG   g  g u
g        g   A           C         -Ug ga g 


mirna_id: hsa-mir-143
hairpin:
-gc    c  ccug    c ag      G         G      U  -  ag 
   gcag gc    ucuc c  ccugaG UGCAGUGCU CAUCUC GG Uc  u
   |||| ||    |||| |  |||||| ||||||||| |||||| || ||   
   cguc ug    agag g  ggaCUC AUGUCACGA GUAGAG cu ag  u
cga    u  uuga    a aa      G         A      U  g  gg 


mirna_id: hsa-mir-144
hairpin:
-u   -    u      G        A         -A    gc 
  ggg gccc ggcugG AUAUCAUC UAUACUGUA  Guuu  g
  ||| |||| |||||| |||||||| |||||||||  ||||   
  ccc cggg cugaUC UGUAGUAG AUAUGACAU  caga  a
cc   a    c      A        -         ca    gu 


mirna_id: hsa-mir-145
hairpin:
c   u  u     c  UC    U  C            uagau 
 acc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
 ||| || ||||| ||  |||| || ||||||||||||     c
 ugg ac ggagu UC  GUCA AA GGUCCUUAGGgg     u
u   u  u     -  UU    U  A            uagaa 


mirna_id: hsa-mir-152
hairpin:
u    cc  c              g  a    cc    cgg   c 
 gucc  cc ggcccagguucugu au cacu  gacu   gcu u
 ||||  || |||||||||||||| || ||||  ||||   |||  
 cagg  gg ccgGGUUCAAGACA UA GUGA  CUga   cga g
c    aa  c              G  C    --    ---   g 


mirna_id: hsa-mir-153-1
hairpin:
c     g         -             -c       --   au 
 ucaca cugccagug ucauuuuugugau  ugcagcu  agu  u
 ||||| ||||||||| |||||||||||||  |||||||  |||   
 ggugu gacgguuaC AGUGAAAACACUG  ACGUUga  uca  c
c     g         U             AU       cc   cu 


mirna_id: hsa-mir-153-2
hairpin:
a     gg      -             gu       -a  aa 
 gcggu  ccagug ucauuuuugugau  ugcagcu  gu  u
 |||||  |||||| |||||||||||||  |||||||  ||  a
 uguca  gguuaC AGUGAAAACACUG  ACGUUga  cg  u
g     aa      U             AU       cc  ag 


mirna_id: hsa-mir-191
hairpin:
c   u   c      CA         C  AA       uu  -  c 
 ggc gga agcggg  ACGGAAUCC AA  GCAGCUG  gu cu c
 ||| ||| ||||||  ||||||||| ||  |||||||  || ||  
 ccg ccu ucguCC  UGCUUUAGG UU  CGUCGac  ua ga a
u   u   c      CC         -  CG       cu  c  g 


mirna_id: hsa-mir-9-1
hairpin:
c       guug   UC               G      u  ug 
 gggguug    uua  UUUGGUUAUCUAGCU UAUGAg gg  u
 |||||||    |||  ||||||||||||||| |||||| ||  g
 ccccaau    aaU  AAGCCAAUAGAUCGA AUAcuu cu  g
a       -aaa   GA               A      -  ga 


mirna_id: hsa-mir-9-2
hairpin:
g    c     g   UC               G      ug a 
 gaag gaguu uua  UUUGGUUAUCUAGCU UAUGAg  u u
 |||| ||||| |||  ||||||||||||||| ||||||  |  
 cuuc cucaa aaU  AAGCCAAUAGAUCGA AUAcuu  g u
a    -     a   GA               A      cu g 


mirna_id: hsa-mir-9-3
hairpin:
g    cc       -  C               G     gu  ca 
 gagg  cguuucu cU UUUGGUUAUCUAGCU UAUGA  gc  c
 ||||  ||||||| || ||||||||||||||| |||||  ||   
 cucu  guaaaga GA AAGCCAAUAGAUCGA AUAcu  cg  a
a    ua       U  -               A     gc  ag 


mirna_id: hsa-mir-125a
hairpin:
u     u u     UC  UG   C    UA        ----  a 
 gccag c cuagg  CC  AGA CCUU  ACCUGUGA    gg c
 ||||| | |||||  ||  ||| ||||  ||||||||    ||  
 cgguc g gguCC  GG  UCU GGAG  UGGACAcu    cc a
c     u c     GA  GU   U    --        ggga  u 


mirna_id: hsa-mir-125b-2
hairpin:
a  aga   uu     UC  UG   C   A        -gg   u 
 cc   cuu  ccuag  CC  AGA CCU ACUUGUGA   uau u
 ||   |||  |||||  ||  ||| ||| ||||||||   |||  
 gg   gag  ggauc  GG  UCU GGA UGAACACU   aug u
a  --g   gc     CA  GU   C   C        aca   a 


mirna_id: hsa-mir-126
hairpin:
c    gc     - a           U       C cug   c 
 gcug  gacgg g CAUUAUUACUU UGGUACG G   uga a
 ||||  ||||| | ||||||||||| ||||||| |   |||  
 cggc  cugcc C GUAAUAAUGAG GCCAUGC c   acu c
a    ac     G -           U       U -aa   u 


mirna_id: hsa-mir-127
hairpin:
-----  u   ca   ucu      ugCUG         G  C      --  a 
     ug gau  cug   ccagcc     AAGCUCAGA GG UCUGAU  uc g
     || |||  |||   ||||||     ||||||||| || ||||||  || a
     ac cug  ggc   ggUCGG     UUCGAGUCU CC AGGCUa  ag a
cuacu  u   aa   --u      -----         G  U      cu  a 


mirna_id: hsa-mir-129-2
hairpin:
u             -       C   CU      ---     acau 
 gcccuucgcgaau CUUUUUG GGU  GGGCUU   GCugu    a
 ||||||||||||| ||||||| |||  ||||||   |||||     
 cgggaggcguuUA GAAAAAC CCA  CCCGAA   cgaua    a
g             C       C   UU      ggc     acuc 


mirna_id: hsa-mir-134
hairpin:
c     gU        U  -A   G    ---    g 
 agggu  GUGACUGG UG  CCA AGGG   Gcau c
 |||||  |||||||| ||  ||| ||||   |||| a
 uccca  cacugauc ac  ggu uccc   ugug c
c     ac        c  cg   g    acu    u 


mirna_id: hsa-mir-136
hairpin:
u        g        C     UUU          uuc 
 gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
 |||||||| |||||||| |||||   ||||||||||   u
 cuugggag cuUCUGAG UAAAC   GCUACUACcu   a
u        a        -     UCU          cgu 


mirna_id: hsa-mir-138-1
hairpin:
c    gca          g   AG             UCA       gc a 
 ccug   ugguguggug ggc  CUGGUGUUGUGAA   GGCCGuu  c a
 ||||   |||||||||| |||  |||||||||||||   |||||||  | u
 ggac   aucacaccac CCG  GACCACAACACUU   UCGgcaa  g c
-    ---          a   -G             -CA       ga a 


mirna_id: hsa-mir-146a
hairpin:
c     -----u      u     uU            C  U     g  uc 
 cgaug      guaucc cagcu  GAGAACUGAAUU CA GGGUU ug  a
 |||||      |||||| |||||  |||||||||||| || ||||| ||  g
 gcuac      uauagg gucGA  UUCUUGACUUAA GU UCCag ac  u
u     ugucuc      -     -C            A  C     -  ug 


mirna_id: hsa-mir-149
hairpin:
g     -    g   U U G      G     A     g g   g 
 ccggc gccc agc C G CUCCGU UCUUC CUCCC u cuu u
 ||||| |||| ||| | | |||||| ||||| ||||| | |||  
 ggucg cggg uCG G C GGGGCA GGAGG GAggg a gag c
a     a    g   U U G      G     -     - g   c 


mirna_id: hsa-mir-150
hairpin:
c      u  -            AC   U       U -   g 
 ucccca gg cccugUCUCCCA  CCU GUACCAG G cug g
 |||||| || ||||||||||||  ||| ||||||| | |||  
 aggggu cc ggGACAGGGGGU  GGA CAUGGUC c gac c
c      -  a            CC   -       c a   u 


mirna_id: hsa-mir-154
hairpin:
g       u            U      UGCC    - uuu 
 ugguacu gaagaUAGGUUA CCGUGU    UUCG c   a
 ||||||| |||||||||||| ||||||    |||| |   u
 accauga uuuUUAUCCAGU GGCACA    AAgc g   u
a       c            U      UACU    a ugu 


mirna_id: hsa-mir-184
hairpin:
c       g c         c      a c     -    ug 
 cagucac u cccuuauca uuuucc g ccagc uuug  a
 ||||||| | ||||||||| |||||| | ||||| ||||   
 guuagug a GGGAAUAGU AAGAGG C GGUug gaau  c
a       g U         C      - A     u    gu 


mirna_id: hsa-mir-185
hairpin:
a     c       UG   A     G         Au  uc 
 ggggg gagggau  GAG GAAAG CAGUUCCUG  gg  c
 ||||| |||||||  ||| ||||| |||||||||  ||   
 cccuc cuucCUG  CUC CUUUC GUCGGGGAc  cc  c
a     c       GU   -     G         -c  uc 


mirna_id: hsa-mir-186
hairpin:
u     u                 U     U      ucuggu 
 gcuug aacuuucCAAAGAAUUC CCUUU GGGCUu      u
 ||||| ||||||||||||||||| ||||| ||||||       
 cgagu uugaaGGGUUUUUUAAG GGAAA CCCGaa      u
u     -                 U     -      uuuuau 


mirna_id: hsa-mir-188
hairpin:
u    -  uc   ca  UC         GU      -ugag u 
 gcuc cc  ucu  CA  CCUUGCAUG  GGAGGG     c u
 |||| ||  |||  ||  |||||||||  ||||||     | u
 cgag gg  agg  GU  GGGACGUAC  CCUCcc     g c
c    c  -u   AC  UU         AC      caaaa u 


mirna_id: hsa-mir-190a
hairpin:
u     c u    - UG               UA     uuau 
 gcagg c cugu g  AUAUGUUUGAUAUAU  GGUug    u
 ||||| | |||| |  |||||||||||||||  |||||     
 cguuc g gaca c  uauacaaacuauaua  ucaac    u
c     u u    u cu               --     cuaa 


mirna_id: hsa-mir-193a
hairpin:
cgaggau   a             U     CG   G  A   gggu 
       ggg gcugagggcUGGG CUUUG  GGC AG UGA    g
       ||| ||||||||||||| |||||  ||| || |||     
       ccc cggcucuUGACCC GAAAC  CCG UC Acu    u
------g   c             U     AU   G  A   aggc 


mirna_id: hsa-mir-194-1
hairpin:
a    - uu      U         A      G    cu  gu 
 uggu g  aucaag GUAACAGCA CUCCAU UGGA  gu  a
 |||| |  |||||| ||||||||| |||||| ||||  ||   
 acca u  uaguuu cauugucgu gaggug accu  ua  c
a    u gg      u         a      -    -u  ac 


mirna_id: hsa-mir-195
hairpin:
a   u     g  cU          -A          caggga 
 gcu cccug cu  AGCAGCACAG  AAUAUUGGCa      a
 ||| ||||| ||  ||||||||||  ||||||||||       
 ugg gggac ga  UCGUCGUGUC  UUAUAACCgu      g
g   u     g  CC          GG          cugagc 


mirna_id: hsa-mir-206
hairpin:
u    c                        cc     u g uu 
 gcuu ccgaggccacaugcuucuuuauau  ccaua g a  a
 |||| ||||||||||||||||||||||||  ||||| | |   
 ugaa ggcuuuGGUGUGUGAAGGAAUGUA  GGUau c u  c
g    c                        -A     - g uu 


mirna_id: cbr-let-7
hairpin:
a    gg a           U  G           ----   au 
 cugg  u cggUGAGGUAG AG UUGUAUAGUUu    aga  a
 ||||  | ||||||||||| || |||||||||||    |||  u
 gacc  a gccacuccauc uu aacguaucaag    ucu  u
g    au a           u  g           uggc   ca 


mirna_id: cbr-lin-4
hairpin:
a      gcuuu  g    -uU   U    C    A      -    uc 
 ucagau     cg ccug   CCC GAGA CUCA GUGUGA gcgu  u
 ||||||     || ||||   ||| |||| |||| |||||| ||||  g
 agucug     gc ggac   ggg cucu gggu cgcacu cgua  a
g      -----  a    cau   c    c    c      u    ca 


mirna_id: cbr-mir-1
hairpin:
u     -----g   ag           c      gc     -    ac 
 gcugu      ccg  cugcauacuuc uuacau  ccaua cugu  u
 |||||      |||  ||||||||||| ||||||  ||||| ||||  g
 cggca      ggc  gAUGUAUGAAG AAUGUA  GGUau ggua  u
g     aucuaa   aa           A      -A     a    ag 


mirna_id: cbr-mir-34
hairpin:
a  c   -    g   -u A       -U   U     G   -  u  a 
 ag acu caug ucg  g GGCAGUG  GGU AGCUG UUG ca ac c
 || ||| |||| |||  | |||||||  ||| ||||| ||| || ||  
 uc uga guac agc  c ccgucac  cca ucggc aac gu ug a
c  c   u    a   cc a       uu   -     -   a  -  g 


mirna_id: cbr-mir-42
hairpin:
u       guc                 c   uuuu        uua u 
 aacccuu   ggaccuuuguggguguu gcc    cggugaag   c g
 |||||||   ||||||||||||||||| |||    ||||||||   | a
 uugggaa   ccuggaGACAUCUACAA UGG    GCCACuuc   g a
c       -au                 U   ----        uuc u 


mirna_id: cbr-mir-43
hairpin:
a      --      c      u    -au   u     u   - gaaa 
 ggcgau  ucugcc gugaca caag   gcu gugau aug c    a
 ||||||  |||||| |||||| ||||   ||| ||||| ||| |    u
 ucguua  aggcgg CGCUGU GUUC   UGA CACUA Uac g    g
a      uu      a      C    AUU   -     -   a gguu 


mirna_id: cbr-mir-44
hairpin:
-    --a       u         -   gu        -   gaa   c 
 gaga   gggccga cuggaugug cuc  uagucaua gac   uca a
 ||||   ||||||| ||||||||| |||  |||||||| |||   |||  
 cucu   uccgguU GACUUACAC GAG  AUCAGUau cug   agu c
a    agg       C         A   --        a   gaa   u 


mirna_id: cbr-mir-45-1
hairpin:
a      c          -   gu         uaa   c u 
 gugcca gcuggaugug cuc  uagucauag   ccu a c
 |||||| |||||||||| |||  |||||||||   ||| | a
 cgcggu CGACUUACAC GAG  AUCAGUauu   gga u a
c      U          A   --         --c   c u 


mirna_id: cbr-mir-45-2
hairpin:
a      c            cg          uaa   c u 
 gugcca gcuggauguguu  uuagucauag   ccu a c
 |||||| ||||||||||||  ||||||||||   ||| | a
 cgcggu CGACUUACACAG  GAUCAGUauu   gga u a
c      U            -A          --c   c u 


mirna_id: cbr-mir-46
hairpin:
g    a  ag g ag           -cg     u      uc  uug 
 agau ca  u a  cugaagagagc   ucuau gacagu  gc   u
 |||| ||  | |  |||||||||||   ||||| ||||||  ||   u
 ucua gu  a u  gACUUCUCUCG   AGGUA CUGUcg  ug   u
a    a  cu g -a           CUG     -      --  uac 


mirna_id: cbr-mir-47
hairpin:
u    -   gaaga           -     uu       ------   a 
 agcu gag     cugaagggagc uuucu  ugacagu      ucg u
 |||| |||     ||||||||||| |||||  |||||||      |||  
 ucgg cuc     gACUUCUCUCG GGAGG  ACUGUca      agc u
c    u   aagug           C     -U       uucuca   u 


mirna_id: cbr-mir-48
hairpin:
a   c   uc    u u    G    CU   UA    C      auc 
 gaa cau  ggga g UGAG UAGG  CAG  GAUG GAggag   c
 ||| |||  |||| | |||| ||||  |||  |||| ||||||    
 cuu gug  cccu c gcuc aucc  guc  cuac cuccuu   a
a   c   uu    u c    a    -u   ug    a      acc 


mirna_id: cbr-mir-49
hairpin:
-        cauuug     c            a u     c  c  - au 
 accgaaac      ccauc gcaguuuuuugu g gugcu cg gc c  c
 ||||||||      ||||| |||||||||||| | ||||| || || |   
 ugguuuug      gguAG CGUCGAAGAGCA C CACGA gc cg g  u
u        ----aa     A            - -     A  c  u au 


mirna_id: cbr-mir-50
hairpin:
u    -    -       c              UU          cu    a 
 ucca ccca ccggccg UGAUAUGUCUGAUA  CUUGGGUUau  gaua u
 |||| |||| ||||||| ||||||||||||||  ||||||||||  |||| g
 aggu gggu ggccggc gcuaugcagauuau  gaacucaaug  uugu a
a    u    c       a              --          --    u 


mirna_id: cbr-mir-52
hairpin:
u    c    --    a u C      A   A   UUC    C    cau 
 uucc gcuc  ugac g c ACCCGU CAU UGU   CGUG Uuga   a
 |||| ||||  |||| | | |||||| ||| |||   |||| ||||    
 aagg ugag  acug c g ugggcg gua aca   gcac aacu   g
c    c    cu    g c a      a   -   -ua    u    cga 


mirna_id: cbr-mir-57
hairpin:
-     gag      ---    CU    A  G    G     uc   a 
 gcucu   uucguc   UACC  GUAG UC AGCU UGUGU  uga g
 |||||   ||||||   ||||  |||| || |||| |||||  |||  
 cgagg   agguag   gugg  cauc ag ucga gcaca  acu u
a     -ua      caa    au    -  a    -     -u   a 


mirna_id: cbr-mir-58
hairpin:
a         c    auu  c        a  cca       u 
 uccauugcc uacu   cg aucucauc cu   guauaua a
 ||||||||| ||||   || |||||||| ||   |||||||  
 aggUAACGG AUGA   GC UAGAGUag ga   uauauau u
a         C    CUU  -        -  --a       a 


mirna_id: cbr-mir-60
hairpin:
u     ag        -   a     a   a   cc 
 ucuug  cuggaaag gug cauaa auc ugu  a
 |||||  |||||||| ||| ||||| ||| |||   
 agaAC  GAUCUUUU CAC GUAUU Uag gca  a
c     CU        A   -     A   c   cg 


mirna_id: cbr-mir-67
hairpin:
u     -uu   a  a    a     -cu      u     gacaau 
 agaua   ucg uc acuc uucug   gguugu augcu      u
 |||||   ||| || |||| |||||   |||||| |||||      g
 ucuau   agc AG UGAG AAGAU   CCAACA Uacga      a
u     cuu   c  A    A     CCU      C     auuagu 


mirna_id: cbr-mir-71
hairpin:
a     a  a         U         g   u   a 
 gcuga cg UGAAAGACA GGGUAGUGA acg cgg g
 ||||| || ||||||||| ||||||||| ||| |||  
 ugacu gc gcuuuuugu cuuaucacu ugc gcu c
c     a  c         -         a   u   c 


mirna_id: cbr-mir-73a
hairpin:
c    -  -   a     c     u  -c    aa    ca  uaucu 
 gguc cc uca acaac gagcu cc  cguc  gcca  gc     c
 |||| || ||| ||||| ||||| ||  ||||  ||||  ||     u
 ccag gg agu uguUG CUUGA GG  GUAG  CGGU  cg     g
a    a  c   a     A     C  UU    AA    --  uuaca 


mirna_id: cbr-mir-74a
hairpin:
c    u        u    a    uc     -   ucuca 
 gcac uuugggcu ccau ucuu  ccagc ucc     u
 |||| |||||||| |||| ||||  ||||| |||     u
 cgug AGAUCUGA GGUA AGAA  GGUcg agg     u
a    u        C    A    -C     u   uauca 


mirna_id: cbr-mir-75
hairpin:
u    ga -   a   c  u      ca     c    -  --   a 
 gcga  c cga uug ag cgguug  agcuu aaua ca  gac a
 ||||  | ||| ||| || ||||||  ||||| |||| ||  |||  
 cgcu  g gcu aAC UC GCCAAC  UCGAA UUau gu  uug u
g    ac u   a   U  C      CA     A    a  uc   g 


mirna_id: cbr-mir-77-1
hairpin:
-      -u                 cu    g     a   auaguc 
 gagcug  gaauuuggauagcugug  cuga gaaau aca      a
 ||||||  |||||||||||||||||  |||| ||||| |||       
 cuuggc  uuuaaACCUGUCGAUAC  GACU CUUua ugu      c
g      uc                 CG    A     c   acccca 


mirna_id: cbr-mir-79
hairpin:
a    --auu u    u          uc     aa    u   auu 
 gaac     c ccga cuuuggugau  agcuu  auga aga   c
 ||||     | |||| ||||||||||  |||||  |||| |||   a
 cuug     g ggcU GAAACCAUUG  UCGAA  UAcu ucu   g
g    accuu c    C          GA     -A    -   gca 


mirna_id: cbr-mir-80
hairpin:
u   -ca   -uu   c  a         --     u  a       -c  u 
 gga   cuc   ucg uc gcuuucgac  augau cu aacaaua  gc g
 |||   |||   ||| || |||||||||  ||||| || |||||||  ||  
 ccu   gag   agc AG CGAAAGUUG  UACUA GA Uuguugu  cg u
a   aua   cuu   a  C         AU     -  G       aa  c 


mirna_id: cbr-mir-81
hairpin:
c    -u      uc         cu      g   ---   auaa 
 guga  uaacgg  gguuuucac  ugaucu aga   gca    c
 ||||  ||||||  |||||||||  |||||| |||   |||     
 cacu  auuguU  UCGAAAGUG  ACUAGA Ucu   cgu    c
u    uc      GA         CU      G   auu   aaga 


mirna_id: cbr-mir-82
hairpin:
a       -cu      a         c       g    ---g   ca 
 aguucuu   agcgac gguuuucgc gugaucu caga    uuc  u
 |||||||   |||||| ||||||||| ||||||| ||||    |||   
 ucaggag   ucguUG CCGAAAGUG UACUAGA GUcu    aag  g
c       aau      A         C       -    acaa   aa 


mirna_id: cbr-mir-85
hairpin:
c        c           -  g    a      aga 
 cccggugc cgcuuuuucag ua uuug aaccag   u
 |||||||| ||||||||||| || |||| ||||||   g
 gggucaCG GCGGAAAAGUU AU AAAC Uugguu   a
u        U           U  G    A      gau 


mirna_id: cbr-mir-86
hairpin:
c      ----      -           G  UU   A   U     auca 
 gaguca    augccg uuUAAGUGAAU CU  GCC CAG Cuucg    u
 ||||||    |||||| ||||||||||| ||  ||| ||| |||||    g
 cucagu    ugcggc ggauucacuua ga  cgg guc gaagu    u
a      uccu      c           -  uu   -   c     acac 


mirna_id: cbr-mir-87
hairpin:
-  u    cccac     -       u     c u    a   -  - ugu 
 gg ugug     ccggc cgccuga acuuu g cuca ccu cg c   c
 || ||||     ||||| ||||||| ||||| | |||| ||| || |   a
 cc acac     ggccg GUGGACU UGAAA C GAGU Gga gc g   g
a  c    ---aa     U       U     - -    -   u  u uaa 


mirna_id: cbr-mir-90a
hairpin:
c      ----        c   u     -    u        caa   aa 
 gcacuc    auuucaag ggc uucaa cgac auaucaac   auc  g
 ||||||    |||||||| ||| ||||| |||| ||||||||   |||   
 ugugag    uagaguuC CCG AAGUU GUUG UAUAGUug   uag  c
u      guuu        C   U     U    -        -ca   au 


mirna_id: cbr-mir-124
hairpin:
u      --uc    ua      c    uga   a       -   c  g 
 uuccag    guca  uggcgu cacc   gug cuuuagu gga au u
 ||||||    ||||  |||||| ||||   ||| ||||||| ||| || a
 aggguc    cggu  ACCGUA GUGG   CAC GGAAUca ccu ug u
u      uuaa    gc      A    -CG   -       a   u  a 


mirna_id: cbr-mir-228
hairpin:
   c    -     c  A    C         A   A   -a  caa 
auc cacc cuguu gc AUGG ACUGCAUGA UUC CGG  ug   a
||| |||| ||||| || |||| ||||||||| ||| |||  ||    
uag gugg ggcag cg uacc uggcguacu agg gcc  ac   g
   a    u     u  a    a         -   c   ag  agc 


mirna_id: cbr-mir-230
hairpin:
a      - u     aua        -      u    g     g   a 
 aaaugc c uaccg   cuuggucg acaauu aaua uaucu auu a
 |||||| | |||||   |||||||| |||||| |||| ||||| |||  
 uuuacg g auggu   GGACCAGC UGUUGA UUAU auagg uag u
c      a u     AAA        G      -    G     -   u 


mirna_id: cbr-mir-232-1
hairpin:
a    -   u        u        uu  ccau      -  acc 
 uuca aga uucggauc ccguaguu  ga    uuuauc ca   u
 |||| ||| |||||||| ||||||||  ||    |||||| ||   a
 aagu uuu aggucuAG GGCGUCAA  CU    AAAUag gu   a
c    g   u        U        UU  ACGU      u  aau 


mirna_id: cbr-mir-233
hairpin:
a   -    -u              c - u      c    u  aaacc 
 agc auuu  ucugucccgcgcau c c uuguuc aaua uc     a
 ||| ||||  |||||||||||||| | | |||||| |||| ||     g
 ucg uaag  agacAGGGCGUGUA G G AACGAG UUau ag     u
g   a    uu              C C U      -    u  aaaga 


mirna_id: cbr-mir-234
hairpin:
g   --c    aaa a     c       c     g       aa    a 
 acu   uagc   g ucaaa gguauuc ugagu aauaaua  aaug g
 |||   ||||   | ||||| ||||||| ||||| |||||||  ||||  
 uga   gucg   c aguUU CCAUAAG GCUCG UUAUUau  uuac u
g   aaa    -aa -     C       A     -       -c    c 


mirna_id: cbr-mir-236
hairpin:
a      --caa           -       uu  a    u   -   acca 
 agugac     uguccagcguc uuaccug  ca uauu aga cug    a
 ||||||     ||||||||||| |||||||  || |||| ||| |||     
 uuacug     auaggUCGCAG AAUGGAC  GU AUAA Ucu gau    a
g      uucug           U       -U  C    -   c   accc 


mirna_id: cbr-mir-241
hairpin:
a    --    a  c        G       -     --   aagg 
 cggu  guca ag UGAGGUAG UGUGAGA AAUGA  cga    c
 ||||  |||| || |||||||| ||||||| |||||  |||    u
 gcca  uagu uc acuucguc acgcucu uuacu  gcu    c
a    uu    g  a        g       g     uu   aauu 


mirna_id: cbr-mir-244
hairpin:
a  c     uc                  CA          -  uc 
 cc aaauu  ucgauuUCUUUGGUUGUA  AAGUGGUAUG gc  u
 || |||||  ||||||||||||||||||  |||||||||| ||   
 gg uuuag  agcuaaggaaaucgacau  uucgccauac cg  c
a  u     uu                  --          u  uu 


mirna_id: cbr-mir-245
hairpin:
u     u   -           caa  u   u     uuu  cu 
 caaug cga agagcugcuug   gg acc aauug   ga  c
 ||||| ||| |||||||||||   || ||| |||||   ||   
 guuac guu uCUCGAUGAAC   CC UGG UUAac   cu  u
u     -   a           CUC  C   -     --u  ua 


mirna_id: cbr-mir-248
hairpin:
u   -       -auu a    a    c     -uu -   u      aa  uu 
 gca aacugau    c cgau agcg uaucc   c cgu guauuc  gc  g
 ||| |||||||    | |||| |||| |||||   | ||| ||||||  ||   
 ugu uuggcua    g gcuA UCGC AUAGG   G GCA CAUgag  ug  g
u   a       gucu a    C    A     CUC U   -      -c  uu 


mirna_id: cbr-mir-250
hairpin:
u    --     ac   uu      c  c     c  -   aau 
 cuuc  ggacc  gcc  caguug cu gugau cg ccg   c
 ||||  |||||  |||  |||||| || ||||| || |||   u
 gaag  ccuGG  CGG  GUCAAC GA CACUa gc ggu   g
u    uu     CA   UU      U  -     a  a   aau 


mirna_id: cbr-mir-251
hairpin:
c      gaca                U  C          gaau 
 ccaaau    ucucgUUAAGUAGUGG GC GCUCUUAUUa    u
 ||||||    |||||||||||||||| || ||||||||||    a
 gguuua    agagcaauucaucgcu ug ugagaauaau    u
a      aagg                -  u          gaac 


mirna_id: cbr-mir-252
hairpin:
a    -  ----        a       U  U  C C      -   c  cc 
 gguc uc    ucccaguu UAAGUAG AG GC G AGGUAA Ccg uu  a
 |||| ||    |||||||| ||||||| || || | |||||| ||| ||   
 ccag ag    aggguuaa auucguc uc cg c uccauu ggu aa  g
g    u  uuuu        g       u  -  u a      u   u  aa 


mirna_id: cbr-mir-259
hairpin:
a    --u gaa      A       UC    UC    U   uuuuca 
 guca   c   acgagu AAUCUCA  CUAA  UGGU gca      a
 ||||   |   |||||| |||||||  ||||  |||| |||       
 cagu   g   uguucg uuagggu  gguu  gcca cgu      u
-    uau auc      g       uu    ua    u   uuuuca 


mirna_id: cbr-mir-268
hairpin:
---u    c  C      U         UUUG U     aca 
    gaag GG AAGAAU AGAAGCAGU    G gucag   c
    |||| || |||||| |||||||||    | |||||   a
    cuuc uc uuuuug ucuucguca    c caguc   c
ucuu    u  -      u         ---- u     acu 


mirna_id: hsa-mir-320a
hairpin:
      c   -ccuc         uu       c      g 
gcuucg ucc     cgccuucuc  cccgguu uucccg a
|||||| |||     |||||||||  ||||||| ||||||  
uggagu agg     GCGGGAGAG  GGGUCGA AAgggc g
      -   aaaaA         UU       A      u 


mirna_id: ath-MIR319a
hairpin:
    a          g      u   c   uc  g u           a -  u   ac        c  aa  c      gccaaaa 
agag gagcuuccuu agucca uca agg  gu a augauucaauu g cu ccg  ucauucau ca  ua cgaguc       u
|||| |||||||||| |||||| ||| |||  || | ||||||||||| | || |||  |||||||| ||  || ||||||        
ucUC CUCGAGGGAA UCAGGU agu ucu  ua u uacuagguuaa c ga ggc  aguaagua gu  au gcucag       u
    C          G      U   u   cu  g -           a a  u   gu        a  aa  u      aucaaac 


mirna_id: ath-MIR319b
hairpin:
  a     uu          cu       uaauau    -         -ga      ac        c  aa     a    aa   u 
ag gagcu  cuucggucca  cauggag      guga gauuuaauu   cucucg  ucauucau ca  uacca auga  gaa u
|| |||||  ||||||||||  |||||||      |||| |||||||||   ||||||  |||||||| ||  ||||| ||||  |||  
UC CUCGA  GAAGUCAGGU  guaucuc      cacu cugaguuaa   gagagc  aguaagua gu  auggu uacu  cuu u
  C     GG          Uc       ----uu    u         aca      gu        a  aa     a    --   g 


mirna_id: mmu-mir-19b-2
hairpin:
a                  --        GUU    -      g 
 cuuacgauuAGUUUUGCA  GAUUUGCA   CAGC guauau u
 ||||||||||||||||||  ||||||||   |||| ||||||  
 ggguguuAGUCAAAACGU  CUAAACGU   GUcg uauaua g
a                  AC        ---    g      a 


mirna_id: mmu-mir-30c-1
hairpin:
a     uu    ugu U       U   ACA         ---g  a 
 ccaug  guag   g GUAAACA CCU   CUCUCAGCu    ug g
 |||||  ||||   | ||||||| |||   |||||||||    ||  
 gguac  cguc   C CAUUUGU GGG   GAGGGUCgg    ac c
a     --    uuC U       U   --A         ugga  u 


mirna_id: mmu-mir-30c-2
hairpin:
   u a    uauU       U   ACA         gugaaa 
gag g caga    GUAAACA CCU   CUCUCAGCu      a
||| | ||||    ||||||| |||   |||||||||       
uuc c gucu    CAUUUGU GGA   GAGGGUCga      g
   - -    cUCU       C   --A         aagaau 


mirna_id: mmu-mir-30d
hairpin:
a    u   u U         CCC           guaa  c 
 aguc gug c GUAAACAUC   GACUGGAAGcu    gc a
 |||| ||| | |||||||||   |||||||||||    ||  
 ucgg cau G CGUUUGUAG   CUGACUUUCga    cg c
c    u   C U         --A           --ac  a 


mirna_id: mmu-mir-148a
hairpin:
a    guu        u              -  -A    CC    -   ag 
 gcca   uggucuuu gagacAAAGUUCUG AG  CACU  GACU cug  u
 ||||   |||||||| |||||||||||||| ||  ||||  |||| |||  a
 uggu   gucggaga cucUGUUUCAAGAC UC  GUGA  CUga gau  u
c    ---        u              A  AC    --    a   ag 


mirna_id: mmu-mir-192
hairpin:
c   c   g g  C         -     A       uacucuu 
 gug aca g cu UGACCUAUG AAUUG CAGCCag       u
 ||| ||| | || ||||||||| ||||| |||||||        
 cac ugu u GA ACUGGAUAC UUAAC GUCgguc       u
c   u   a g  C         C     C       uccucuc 


mirna_id: mmu-mir-196a-1
hairpin:
u    c gg     uga     g     A    C         - Gc ugg 
 gagc g  acugu   gugaa UAGGU GUUU AUGUUGUUG G  c   c
 |||| |  |||||   ||||| ||||| |||| ||||||||| |  |   u
 uucg c  ugacg   uacuU GUCCA CAAA UACAGCAAC c  g   u
c    u au     --g     A     C    C         a aa ucu 


mirna_id: mmu-mir-196a-2
hairpin:
a     uc                  A          a ug   
 gcuga  uguggcuUAGGUAGUUUC UGUUGUUGGG u  ag 
 |||||  |||||||||||||||||| |||||||||| |  | u
 ugacu  acauugAGUCCGUCAAAG ACAACGGCUc a  uu 
c     --                  A          a gu   


mirna_id: mmu-mir-200a
hairpin:
c    - c   g        -             C    uu  uu 
 uggg c ucu ugggCAUC UUACCGGACAGUG UGGA  uc  g
 |||| | ||| |||||||| ||||||||||||| ||||  ||  g
 accc g gga acuUGUAG AAUGGUCUGUCAC AUcu  ag  c
c    a u   a        C             A    -c  uu 


mirna_id: mmu-mir-208a
hairpin:
u         g  uG       G  C  GG      c  a 
 uccuuugac gg  AGCUUUU GC CG  UUAUAC ug c
 ||||||||| ||  ||||||| || ||  |||||| || a
 aggagacug uU  UCGAAAA CG GC  AAUAug ac c
g         g  GU       A  A  AG      c  u 


mirna_id: mmu-let-7a-1
hairpin:
u     g     U   GU                uuagggucacac 
 ucacu uggga GAG  AGUAGGUUGUAUAGUU            c
 ||||| ||||| |||  ||||||||||||||||            c
 agugg auCCU UUC  UCAUCUAACAUAUCaa            a
u     a     -   UG                uagagggucacc 


mirna_id: mmu-let-7a-2
hairpin:
c    u  u      uU   G   U             uagaguuac   aa 
 ugca gu cccagg  GAG UAG AGGUUGUAUAGUU         auc  g
 |||| || ||||||  ||| ||| |||||||||||||         |||   
 acgu ca ggguuc  UUC AUC UCCGACAUGUCaa         uag  g
c    u  -      CU   G   C             ---------   ag 


mirna_id: mmu-let-7b
hairpin:
g     U                     ----  ---a      u 
 caggg GAGGUAGUAGGUUGUGUGGUU    uc    gggcag g
 ||||| |||||||||||||||||||||    ||    |||||| a
 guCCC UUCCGUCAUCCAACAUAUCaa    ag    cccguu u
a     -                     uaga  ccuc      g 


mirna_id: mmu-let-7c-1
hairpin:
u      a      uU   G   U             ua  g ua a 
 gugugc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  c c
 |||||| ||||||  ||| ||| |||||||||||||  || |  | c
 cacacg agguuC  UUC AUC UCCAACAUGUCaa  uu a  g c
u      -      CU   G   U             --  g gg u 


mirna_id: mmu-let-7c-2
hairpin:
a     -   g   U   GU                uugggcucugc 
 cggcc uuu ggg GAG  AGUAGGUUGUAUGGUU           c
 ||||| ||| ||| |||  ||||||||||||||||            
 gccgg gaa uCC UUC  UCAUCUAACAUAUCaa           c
c     u   g   U   UG                uggcgucucgc 


mirna_id: mmu-let-7e
hairpin:
c    cc  c   cU   G                U  ggaaga ac 
 gcgc  cc ggg  GAG UAGGAGGUUGUAUAGU ga      c  c
 ||||  || |||  ||| |||||||||||||||| ||      |   
 cgcg  gg ccC  UUC AUCCUCCGGCAUAUCa cu      g  c
c    uc  a   CU   G                -  --agag ag 


mirna_id: mmu-let-7f-1
hairpin:
a    a UG                      ---------       u 
 ucag g  AGGUAGUAGAUUGUAUAGUUgu         gggguag g
 |||| |  ||||||||||||||||||||||         ||||||| a
 aguC C  UCCGUUAUCUAACAUAUCaaua         ucccauu u
g    - CU                      gaggauuug       u 


mirna_id: mmu-let-7f-2
hairpin:
u      U   GU                uuagggucauac 
 guggga GAG  AGUAGAUUGUAUAGUU            c
 |||||| |||  ||||||||||||||||             
 caccCU UUC  UCAUCUGACAUAUCaa            c
g      -   UG                uagagguucuac 


mirna_id: mmu-mir-15a
hairpin:
c     gaguaaa UA        UA          ga gu 
 ccuug       g  GCAGCACA  AUGGUUUGUG  u  u
 |||||       |  ||||||||  ||||||||||  |  g
 ggaac       C  CGUCGUGU  UACCGGACgu  a  a
a     -auaaaA UC        CA          gg aa 


mirna_id: mmu-mir-16-1
hairpin:
a       gg   c          -  A        C u   gauu 
 ugucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
 |||||||  ||| |||||||||| || |||||||| | |||     
 acgguug  aug AGUCGUCGUG CA UUAUGACC c auu    u
a       ga   a          U  G        u c   aaag 


mirna_id: mmu-mir-16-2
hairpin:
c  g     uc    cU         UA        C  ag   aau 
 au cuugu  cacu  AGCAGCACG  AAUAUUGG Gu  uga   a
 || |||||  ||||  |||||||||  |||||||| ||  |||    
 ua ggaca  guga  UCGUCGUGU  UUAUAACC ca  auu   a
a  g     gu    UU         UA        A  -a   aua 


mirna_id: mmu-mir-18a
hairpin:
u     -        u   --   U   UC   U    A   -  -a  u 
 gcgug cuuuuugu cUA  AGG GCA  UAG GCAG UAG ug  ag a
 ||||| |||||||| |||  ||| |||  ||| |||| ||| ||  ||  
 uguau gaagaaua gGU  UCC CGU  AUC CGUC Auc ac  uc g
c     u        c   CU   U   GA   C    -   u  ga  a 


mirna_id: mmu-mir-20a
hairpin:
g  u  u  --g      ucu    c   -A       UA        G   u   u 
 ug ga gu   acagcu   guag acU  AAGUGCU  UAGUGCAG UAG gug a
 || || ||   ||||||   |||| |||  |||||||  |||||||| ||| |||  
 ac cu ca   ugucga   cguc uGA  UUCACGA  AUUACGUC Auc uac g
g  -  -  aga      --c    a   AA       GC        -   -   c 


mirna_id: mmu-mir-21a
hairpin:
u      ccu                A     A     A    u a 
 guacca   ugucggaUAGCUUAUC GACUG UGUUG cugu g a
 ||||||   |||||||||||||||| ||||| ||||| |||| | u
 uauggu   acaguCUGUCGGGUAG CUGAC ACAAC ggua c c
c      uuu                -     G     -    - u 


mirna_id: mmu-mir-22
hairpin:
a  --u   u   cc               -     A      u  ccu 
 cc   ggc gag  gcaguAGUUCUUCAG UGGCA GCUUUA gu   g
 ||   ||| |||  ||||||||||||||| ||||| |||||| ||   a
 gg   ccg cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
c  ucc   u   -c               G     -      -  acc 


mirna_id: mmu-mir-23a
hairpin:
c  a   c     -       G    G      a  c 
 gg cgg uGGGG UUCCUGG GAUG GAUUUg ug c
 || ||| ||||| ||||||| |||| |||||| || a
 cc guc aCCUU AGGGACC UUAC CUAaac ac g
c  a   a     U       G    A      -  u 


mirna_id: mmu-mir-24-2
hairpin:
-   ucu    ----     ccgc    c  G   A         AA    ug  u 
 gcc   cucc    gggcu    cucc GU CCU CUGAGCUGA  CAGU  au c
 |||   ||||    |||||    |||| || ||| |||||||||  ||||  ||  
 cgg   gagg    cccga    gagG CA GGA GACUUGACU  GUca  ug c
a   -uc    aucc     -ccu    A  A   C         CG    cg  a 


mirna_id: mmu-mir-26a-1
hairpin:
a     -   g      U         C          g gca g 
 aggcc gug ccucgU CAAGUAAUC AGGAUAGGCU u   g u
 ||||| ||| |||||| ||||||||| |||||||||| |   |  
 uccgg cgc gggGCA GUUCAUUGG UCUUAUCCgg g   c c
g     g   a      C         U          g -aa c 


mirna_id: mmu-mir-26b
hairpin:
u  -    ga   -   U        UC         ug    g 
 gc ccgg  ccc agU CAAGUAAU  AGGAUAGGU  uggu c
 || ||||  ||| ||| ||||||||  |||||||||  ||||  
 cg ggcc  ggg UCG GUUCAUUA  UCUUGUCCg  acca u
c  u    gg   C   -        CC         --    g 


mirna_id: mmu-mir-29a
hairpin:
a    uuagagg            UUU       C    ucaa 
 cccc       augACUGAUUUC   UGGUGUU AGag    u
 ||||       ||||||||||||   ||||||| ||||    a
 gggg       uAUUGGCUAAAG   ACCACGA Ucuu    g
a    uuaguaa            UCU       -    uuaa 


mirna_id: mmu-mir-29c
hairpin:
a         -  ggc           UCC       ---     u 
 ucucuuaca ca   UGACCGAUUUC   UGGUGUU   Cagag c
 ||||||||| ||   |||||||||||   |||||||   ||||| u
 gggggaugu gu   AUUGGCUAAAG   ACCACGA   guuuu g
a         a  ---           UUU       Ucu     u 


mirna_id: mmu-mir-27a
hairpin:
u  -  u a  a  A         UG  U       a  uccac 
 gg cc g gg gc GGGCUUAGC  CU GUGAGCA gg     a
 || || | || || |||||||||  || ||||||| ||      
 cc gg c cc CG CUUGAAUCG  GA CACUUgu cu     g
c  a  u -  c  C         GU  -       g  gaaac 


mirna_id: mmu-mir-31
hairpin:
u   c   uaac     acu      gA     G   C         -U   gaa 
 gcu cug    ucgga   ggagag  GGCAA AUG UGGCAUAGC  Guu   c
 ||| |||    |||||   ||||||  ||||| ||| |||||||||  |||    
 cga gac    agucu   ccuuuC  CCGUU UAC ACCGUAUCG  caa   u
u   c   ----     -gu      UA     A   A         Uc   gag 


mirna_id: mmu-mir-92a-2
hairpin:
u    --a   a   a     G     U    G  U     -      
 gccc   uuc ucc cAGGU GGGAU GGUG CA UACuu guguu 
 ||||   ||| ||| ||||| ||||| |||| || ||||| |||| a
 uggg   aag agg GUCCG CCCUG UCAC GU AUgaa uauag 
u    aga   a   a     G     U    -  U     a      


mirna_id: mmu-mir-93
hairpin:
a   a         -CA       -     U    G   u  aau 
 guc ugggggcuc   AAGUGCU GUUCG GCAG UAG gu   u
 ||| |||||||||   ||||||| ||||| |||| ||| ||   a
 cag acccccgaG   UUCACGA CGAGU CGUC Auc ca   c
a   g         CCC       U     -    -   -  guc 


mirna_id: mmu-mir-96
hairpin:
c     cca       gg  g  U         G     UU     ug -  cu 
 cagua   ucugcuu  cc au UUGGCACUA CACAU  UUGCU  u gu  c
 |||||   |||||||  || || ||||||||| |||||  |||||  | ||   
 gucgu   gggcgaa  gg UA AACCGUGAU GUGUA  AACga  g cg  u
c     --c       aa  g  U         -     CU     gu u  cc 


mirna_id: mmu-mir-34a
hairpin:
c   c    -    a    uU        -   A          --gug   a 
 cag ugug agua uucu  GGCAGUGU CUU GCUGGUUGUu     agu u
 ||| |||| |||| ||||  |||||||| ||| ||||||||||     |||  
 guu acac ucgu aaga  CCGUCAUA GAA CGACUAAcga     ucg u
u   -    g    g    UC        U   -          aggaa   a 


mirna_id: mmu-mir-129-2
hairpin:
u             -       C   CU      ---     acau 
 gccuuucgcgaau CUUUUUG GGU  GGGCUU   GCugu    a
 ||||||||||||| ||||||| |||  ||||||   |||||     
 cgggaggcgcuUA GAAAAAC CCA  CCCGAA   cgaua    a
g             C       C   UU      ggc     acuc 


mirna_id: mmu-mir-98
hairpin:
c   -      ug   U                 U    ---------      aggg 
 ugc acaugc  ggg GAGGUAGUAAGUUGUAU GUUg         uggggu    a
 ||| ||||||  ||| ||||||||||||||||| ||||         ||||||    u
 acg ugugug  UCC UUUCAUCAUUCAACAUA Caau         accccg    u
u   g      gu   -                 U    agaagaaug      gauu 


mirna_id: mmu-mir-103-1
hairpin:
u     c    c  --    U  U           C   u g a 
 ucuua ugcc uc  GGCU CU UACAGUGCUGC UUG u c u
 ||||| |||| ||  |||| || ||||||||||| ||| | |  
 agagu acgg AG  UCGG GA AUGUUACGACG Aac a g a
c     u    a  UA    -  C           -   u g u 


mirna_id: mmu-mir-103-2
hairpin:
g    c  g      --   U  U           ----    ua 
 ucuu gu cuuucA  GCU CU UACAGUGCUGC    CUUG  g
 |||| || ||||||  ||| || |||||||||||    ||||  c
 agaa ca gaaAGU  CGG GA AUGUUACGACG    ggac  a
a    c  a      AU   -  C           Aacu    uu 


mirna_id: rno-mir-322
hairpin:
ccucgcuga   -       a  CA     AA             g auu 
         cuc cgaaggg ug  GCAGC  UUCAUGUUUUGGA u   g
         ||| ||||||| ||  |||||  ||||||||||||| |    
         ggg gcuuccc AC  CGUCG  AAGUACAAAacuu g   c
------aaa   u       c  AA     CG             g aac 


mirna_id: mmu-mir-322
hairpin:
ccucguuga   -       c  CA     AA             g auu 
         cuc cgaaggg ug  GCAGC  UUCAUGUUUUGGA u   g
         ||| ||||||| ||  |||||  ||||||||||||| |    
         ggg gcuuccc AC  CGUCG  AAGUACAAAacuu g   c
------aag   u       C  AA     CG             g aac 


mirna_id: rno-mir-323
hairpin:
---uu      u g        G U     GCGC  U    uca 
     gguacu g agagAGGU G CCGUG    GU CGCu   u
     |||||| | |||||||| | |||||    || ||||    
     cuaugg c uuUCUCCA C GGCAC    CA gcgg   u
cuaau      - g        G U     AUUA  C    uau 


mirna_id: rno-mir-301a
hairpin:
ccugc    ua     ga  ac    C    ---U          ----A       
     uggc  cugcu  cg  uGCU UGAC    UUAUUGCACU     Cuguac 
     ||||  |||||  ||  |||| ||||    ||||||||||     ||||| u
     aucg  gacga  gc  aCGA ACUG    GAUAACGUGA     gacaug 
----c    --     gg  cu    A    UUAU          Cgauc       


mirna_id: rno-mir-324
hairpin:
cu      gc     C   U C   A     U   U  aaag 
  gacuau  cuccu GCA C CCU GGGCA UGG GU    c
  ||||||  ||||| ||| | ||| ||||| ||| ||     
  cugaug  gggGG CGU G GGA CCCGU ACC ca    u
--      uu     U   C U   C     C   -  gagg 


mirna_id: mmu-mir-324
hairpin:
aacu      gc     C   U C   A     U   U  aaag 
    gacuau  cuccu GCA C CCU GGGCA UGG GU    c
    ||||||  ||||| ||| | ||| ||||| ||| ||     
    cugaug  ggggg CGU G GGA CCCGU ACC ca    u
cagu      uu     U   C U   C     C   -  gagg 


mirna_id: rno-mir-325
hairpin:
----------a              CC   U                Uu gug 
           uauagugcuugguu  UAG AGGUGCUCAGUAAGUG  u   a
           ||||||||||||||  ||| ||||||||||||||||  |    
           gugucacgaacuAA  AUC UCCACGAGUUAUUUgc  a   c
ggucucggauc              CU   C                uu aua 


mirna_id: mmu-mir-326
hairpin:
cuc        guu          C       UUGU  A     guuau 
   aucugucu   gggcuGGGGG AGGGCCU    GA GGCGg     g
   ||||||||   |||||||||| |||||||    || |||||      
   uagacgga   ccUGACCUCC UCCCGGG    CU CCgcu     c
auu        -gc          U       ---U  -     agacu 


mirna_id: rno-mir-326
hairpin:
cuc        g            C       UUGU  A     guuau 
   aucugucu uggggcuGGGGG AGGGCCU    GA ggcgg     g
   |||||||| |||||||||||| |||||||    || |||||      
   uagacgga gcccUGACCUCC UCCCGGG    CU CCgcu     c
auu        -            U       ---U  -     agacu 


mirna_id: rno-mir-327
hairpin:
---------------------      --    c   uCCUU         G   G  g 
                     gucuga  ugcc uca     GAGGGGCAU AGG Ua u
                     ||||||  |||| |||     ||||||||| ||| || c
                     caggcu  acgg agu     cucccugua ucc au a
ggaguguucgguaagguugua      uc    u   ----u         g   g  g 


mirna_id: rno-let-7d
hairpin:
u    u       A              C      -------uua         
 gggc ccuagga GAGGUAGUAGGUUG AUAGUU          gggcagag 
 |||| ||||||| |||||||||||||| ||||||          ||||||| a
 uccg ggauUCU UUCCGUCGUCCAGC UAUCaa          cccguuuu 
u    -       -              A      uugaggaaca         


mirna_id: rno-mir-328a
hairpin:
---     -      -------     GA     U     agaaa  au 
   ugggg caGGGG       GGCAG  GGGGC CAggg     gc  c
   ||||| ||||||       |||||  ||||| |||||     ||  u
   acccc gucccc       CCGUC  UCCCG GUCcc     cg  a
uaa     u      UGCCUUC     UC     -     -----  ac 


mirna_id: mmu-mir-328
hairpin:
cugucuc  ag cu     a         GA     U     a aaa  a 
       gg  c  ggggc GGGGGGCAG  GGGGC CAGGG g   gu u
       ||  |  ||||| |||||||||  ||||| ||||| |   ||  
       cc  g  cccUG CUUCCCGUC  UCCCG GUCcc c   ca c
--ugaac  cu uc     C         UC     -     - -ga  u 


mirna_id: rno-mir-329
hairpin:
uguucgcuuc      c            UU      CUC      -   g 
          ugguac ggaagAGAGGUU  CUGGGU   UGUUUC uuu a
          |||||| ||||||||||||  ||||||   |||||| ||| u
          acuaug cuuUUUUUCCAA  GACCCA   ACAAag aag g
-----ccuaa      a            UC      --C      u   a 


mirna_id: mmu-mir-329
hairpin:
uguucgcuuc      c            UU      CUC      -   g 
          ugguac ggaagAGAGGUU  CUGGGU   UGUUuc uuu a
          |||||| ||||||||||||  ||||||   |||||| ||| u
          acuaug cuuUUUUUCCAA  GACCCA   ACAAag aag g
-----ccuaa      a            UC      --C      u   a 


mirna_id: rno-mir-330
hairpin:
acccuuu   -  u u           --    -    U   AG    uucaa 
       ggc ga c cugccUCUCUG  GGCC UGUG CUU  GCuc     g
       ||| || | |||||||||||  |||| |||| |||  ||||     a
       ucg cu g gauggAGAGAC  CCGG ACAC GAA  CGag     u
------c   u  c c           GU    G    -   -A    caauc 


mirna_id: mmu-mir-330
hairpin:
gacccuuu   -  u u           --    -    U   AG    uucaa 
        ggc ga c cugccUCUCUG  GGCC UGUG CUU  GCuc     g
        ||| || | |||||||||||  |||| |||| |||  ||||     a
        ucg cu g gauggAGAGAC  CCGG ACAC GAA  CGag     u
-------c   u  c c           GU    G    -   -A    caacc 


mirna_id: rno-mir-331
hairpin:
gaguc   UCUU         U        u    u       au ccaga 
     uGG    GUUUGGGUU GUUcuagg augg cccaggg  c     u
     |||    ||||||||| |||||||| |||| |||||||  |     c
     acc    caaauccaa cAAGAUCC UAUC GGGUCCC  g     a
----u   ----         c        -    C       CG accaa 


mirna_id: mmu-mir-331
hairpin:
gagucu  uuuu         u        U    U       AU Ccaga 
      gg    guuuggguu guuCUAGG AUGG CCCAGGG  C     u
      ||    ||||||||| |||||||| |||| |||||||  |     c
      cc    caaauccaa cAAGAUCC UAUC GGGUCCC  g     a
----ug  ----         c        -    C       CG accaa 


mirna_id: rno-mir-140
hairpin:
-   u    cucu        -  A             A       uu   uc 
 gug cucu    guguccug cC GUGGUUUUACCCU UGGUAGg  aca  a
 ||| ||||    |||||||| || ||||||||||||| |||||||  |||   
 cac gagg    cauaggac GG CACCAAGAUGGGA ACCAUcu  ugu  u
c   -    ---u        a  -             C       --   cg 


mirna_id: rno-mir-335
hairpin:
--------ucuuu    c        A         C        Uuu    u 
             uggg gggggUCA GAGCAAUAA GAAAAAUG   guuu u
             |||| |||||||| ||||||||| ||||||||   |||| c
             acuc ccuccagu cucguuauu cuuuuugc   caaa g
accgauauuguuu    u        c         a        ---    u 


mirna_id: rno-mir-336
hairpin:
--------au  ga   u     U  -      --CAU         - ugag 
          gu  ccg gccuc CA CCCUUC     AUCUAGUCU c    a
          ||  ||| ||||| || ||||||     ||||||||| |     
          ca  ggu cggAG GU GGGAAG     UAGGUCAga g    a
auuucgaggu  aa   c     U  A      UACCU         a uaaa 


mirna_id: rno-mir-337
hairpin:
aguguagugagaa uu         -   C         C         U  ca 
             g  ggggggugg gaa GGCGUCAUG AGGAGUUGA ug  c
             |  ||||||||| ||| ||||||||| ||||||||| ||   
             c  ucccccacu cUU CCGUAGUAU UCCUCGACU ac  a
-----------aa -u         u   U         A         U  cg 


mirna_id: mmu-mir-337
hairpin:
caguguagugagaa uu         -   C         C         u  ca 
              g  ggggggugg GAA GGCGUCAUG AGGAGUUga ug  c
              |  ||||||||| ||| ||||||||| ||||||||| ||   
              c  ucccccacu cuu CCGUAGUAU UCCUCGACU ac  a
-------------a -u         u   U         A         U  cg 


mirna_id: rno-mir-148b
hairpin:
caggcacucuu   a       uG         U  A   ------    -  u 
           agc uuugagg  AAGUUCUGU AU CAC      UCAG Gc g
           ||| |||||||  ||||||||| || |||      |||| ||  
           ucg aagcucU  UUCAAGACA UA GUG      aguc cg u
------aucuu   a       GU         C  C   ACUgaa    u  g 


mirna_id: mmu-mir-148b
hairpin:
caggcacccuu   a       uG         U  A   ------    -  U 
           agc uuugagg  AAGUUCUGU AU CAC      UCAG GC g
           ||| |||||||  ||||||||| || |||      |||| ||  
           ucg aagcucU  UUCAAGACA UA GUG      aguc cg u
------aucuu   a       GU         C  C   ACUgaa    u  g 


mirna_id: rno-mir-338
hairpin:
uccc      U   -         -   G g g 
    cAACAA AUC CUGGUGCUG AGU g u c
    |||||| ||| ||||||||| ||| | |  
    GUUGUU UAG GACUACGAC Uca u a a
agaA      U   U         C   g g c 


mirna_id: mmu-mir-338
hairpin:
caacgcugcaca   c      cc      U   -         -   G g g 
            ggc guccuc  cAACAA AUC CUGGUGCUG AGU g u c
            ||| ||||||  |||||| ||| ||||||||| ||| | |  
            ucg cgggag  GUUGUU UAG GACUACGAC Uca u a a
--------accg   a      aa      U   U         C   g g c 


mirna_id: rno-mir-339
hairpin:
----------ac         a c U C     C  C   A      --   u 
            gggguggac c g C CUGUC UC AGG GCUCAC  Gua g
            ||||||||| | | | ||||| || ||| ||||||  |||  
            ccccaccug g C G GACAG AG UCC CGAGUg  cgu c
aacccgucacgu         a A C A     C  C   G      uc   c 


mirna_id: mmu-mir-339
hairpin:
----------ac       c    aU C     CU  -   A      --   u 
            ggggugg cacu  C CUGUC  CC AGG GCUCAC  Gua g
            ||||||| ||||  | |||||  || ||| ||||||  |||  
            ccccacc gugG  G GACAG  GG UCC CGAGUg  cgu c
caccugucacgu       u    CC A     -C  C   G      uc   c 


mirna_id: rno-mir-340
hairpin:
cacuu     c      aU       -CAA      U    g     ug 
     guacu ggugug  UAUAAAG    UGAGAC GAUU ucaug  u
     ||||| ||||||  |||||||    |||||| |||| |||||  c
     uaugg ccauaC  AUAUUUC    ACUCUG CUag ggugu  g
-auuc     u      CG       AUUG      C    -     uu 


mirna_id: mmu-mir-340
hairpin:
caauu     u      aU       -CAA      U    g     ug 
     guacu ggugug  UAUAAAG    UGAGAC GAUU ucaua  u
     ||||| ||||||  |||||||    |||||| |||| |||||  c
     uaugg ccauac  AUAUUUC    ACUCUG CUag ggugu  g
-auuc     u      CG       AUUG      C    -     uu 


mirna_id: rno-mir-341
hairpin:
aaaau   --  u   ag       gu          cu   u   u a 
     gau  ga guc  uuggccg  cggccgaucg  cgg cug c g
     |||  || |||  |||||||  ||||||||||  ||| ||| | u
     cug  cu cgg  gacUGGC  GCUGGCUAGC  GCU ggc g c
--cuu   uc  u   cu       UG          UG   -   u a 


mirna_id: mmu-mir-341
hairpin:
aaaau   --  u   ag       GU          CU   U   u a 
     gau  ga guc  uuggcCG  CGGCCGAUCG  CGG Cug c g
     |||  || |||  |||||||  ||||||||||  ||| ||| | u
     cug  cu cgg  gacUGGC  GCUGGCUAGC  GCU ggc g c
--cuu   uc  u   cu       UG          UG   -   u a 


mirna_id: rno-mir-342
hairpin:
gaaaau    u        G      --UA      AUUGA      ugg  a 
      gggc caaggugA GGGUGC    UCUGUG     Gggaca   uc a
      |||| |||||||| ||||||    ||||||     ||||||   ||  
      uccg guuccacU CCCACG    AGACAC     CUCUgu   ag u
-agucg    -        G      CUAA      ----A      -ua  g 


mirna_id: rno-mir-343
hairpin:
gcaccuucauggacc   --a    - -g    ug  g         c   --     
               ugg   guag a  uggg  ug cggggggag agg  gccc 
               |||   |||| |  ||||  || ||||||||| |||  ||| a
               acc   cguc u  ACCC  GU GCCUCCCUC Ucc  cggg 
--------------a   gua    c AG    GU  -         -   aa     


mirna_id: rno-mir-344a-1
hairpin:
------c      cagaguuu    ca        CC         UC        a 
       ugcagc        uuac  gUCAGGCU  UGGCUAGAU  CAGGuacc a
       ||||||        ||||  ||||||||  |||||||||  ||||||||  
       acgucg        aaUG  CAGUCCGA  ACCGAUCUA  GUccaugg c
aaagaaa      --------    -C        -A         --        u 


mirna_id: mmu-mir-344-1
hairpin:
cugcagc        uuac          CC         UC        a 
       caggguuu    cAGUCAGGCU  UGGCUAGAU  CAGGuacc g
       ||||||||    ||||||||||  |||||||||  ||||||||  
       gucccgaa    GUCAGUCCGA  ACCGAUCUA  GUccaugg c
---acaa        ---U          -A         --        u 


mirna_id: rno-mir-345
hairpin:
--------acc   gu     c  G U          C   U    -      
           caa  ccagg cU C GACCCCUAGU CAG GCuu guggu 
           |||  ||||| || | |||||||||| ||| |||| |||| g
           guu  ggucc GA G CUGGGGAUCA GUC Cggg caucg 
ggacaccucua   ug     A  G U          A   C    u      


mirna_id: mmu-mir-345
hairpin:
--------acc   gu     c  G U          C   U    -      
           caa  ccagg cu C GACCCCUAGU CAG GCUU guggu 
           |||  ||||| || | |||||||||| ||| |||| |||| g
           guu  ggucC GA G CUGGGGAUCA GUC cggg caucg 
ggacaccucua   ug     A  G U          A   C    u      


mirna_id: rno-mir-346
hairpin:
-----------     g ug    u    CU    G   G        U  guug 
           ucugu u  ggca cUGU  GCCU AGU CCUGCCUC cu    c
           ||||| |  |||| ||||  |||| ||| |||||||| ||     
           agacg g  ccgu gacg  cggg ucg ggacggag ga    u
cuuccucgucg     - gu    c    uc    -   g        -  aguc 


mirna_id: mmu-mir-346
hairpin:
-----------     g ug    u    CU    G   G        U  guug 
           ucugu u  ggcg cUGU  GCCC AGU CCUGCCUC cu    c
           ||||| |  |||| ||||  |||| ||| |||||||| ||     
           agacg g  ccgu GACG  CGGG UCG GGACGGAg ga    u
cuuccucgucg     - gu    C    UC    -   G        -  aguc 


mirna_id: rno-mir-347
hairpin:
-    -    -     ug   g     c  g    uca       uc 
 gagc cccu gcugg  ggc cgggg gg gguu   ggugguc  g
 |||| |||| |||||  ||| ||||| || ||||   |||||||  c
 cuug gggg cgACC  CUG GUCUC CU Ucag   ccgccgg  g
c    a    u     CG   G     C  G    --c       ug 


mirna_id: rno-mir-349
hairpin:
-------   g  u    caugua         g  -         ucua c   u 
       gaa ac cuag      agguugggg ag ggggcugug    g aag c
       ||| || ||||      ||||||||| || |||||||||    | |||  
       cuu ug gaUC      UCCAAUUCU UC UCCCGACac    c uuc u
ccucggc   g  -    ------         G  G         --cc c   u 


mirna_id: rno-mir-129-2
hairpin:
agacu             -       C   CU      ---     acau 
     gcccuucgcgaau CUUUUUG GGU  GGGCUU   GCugu    a
     ||||||||||||| ||||||| |||  ||||||   |||||     
     cgggaggcgcuUA GAAAAAC CCA  CCCGAA   cgaua    a
-cgcg             C       C   UU      ggc     acuc 


mirna_id: rno-mir-20a
hairpin:
     ucu    c   -A       UA        G   u   u 
cagcu   guag acU  AAGUGCU  UAGUGCAG UAG gug c
|||||   |||| |||  |||||||  |||||||| ||| |||  
gucga   cguc ugA  UUCACGA  AUUACGUC Auc uac g
     --c    a   CA       GC        -   -   u 


mirna_id: rno-mir-350
hairpin:
agaugccuug      c   a  -      cac u      -     gugag 
          cuccua aag gu aaagug   g gcuuug ggaca     g
          |||||| ||| || ||||||   | |||||| |||||     a
          gaggau uuc CA UUUCAC   C CGAAAC CUUgu     a
-----guuga      -   c  C      AUA C      A     aauaa 


mirna_id: mmu-mir-350
hairpin:
agaugccuug      c   a  -      C   C      -     gugag 
          cuccua aag gu AAAGUG AUG GCUUUG GGaca     g
          |||||| ||| || |||||| ||| |||||| |||||     a
          gaggau uuc ca UUUCAC UAC CGAAAC CUUgu     a
-----guuga      -   c  C      A   C      A     aauaa 


mirna_id: rno-mir-7a-1
hairpin:
ugu      a  u        A     A       U      --     a 
   uggccu gu cugugUGG AGACU GUGAUUU GUUGUu  uuuag u
   |||||| || |||||||| ||||| ||||||| ||||||  |||||  
   accgga ca gguaUACC UCUGA CACUAAA CAACAg  gaauc a
ucc      -  c        G     -       -      ca     a 


mirna_id: rno-mir-351
hairpin:
cauggcac     u     UG   A   C     G    Agg ga 
        cucca uUCCC  AGG GCC UUUGA CCUG   u  a
        ||||| |||||  ||| ||| ||||| ||||   |   
        gaggu AAGGG  UCC CGG GAACU GGac   a  a
--------     C     --   G   A     -    aaa aa 


mirna_id: mmu-mir-351
hairpin:
----ca      ----     u     UG   A   C     G    gagugaa 
      uggcac    cuccg uUCCC  AGG GCC UUUGA CCUG       a
      ||||||    ||||| |||||  ||| ||| ||||| ||||        
      auugug    gaggu AAGGG  UCC CGG GAACU GGac       a
cuucaa      agaa     C     --   G   A     -    aaaaaaa 


mirna_id: rno-mir-352
hairpin:
guacauauguugaagauuauuaauauauagagugg ug     g  -    ua  a   g 
                                   g  uugug ug guag  ug uau u
                                   |  ||||| || ||||  || ||| A
                                   u  agcAU AU CGUU  AU AUG G
--------------------------aguauguga gu     G  A    GG  G   A 


mirna_id: rno-mir-135b
hairpin:
------c     --                   CAU          uug ug 
       gcucu  gcuguggccUAUGGCUUUU   UCCUAUGUGA   c  u
       |||||  |||||||||||||||||||   ||||||||||   |   
       cgggg  ugacaucGGGUACCGAAAA   GGGAUGUAcu   g  u
ccucgaa     ag                   -UC          caa cc 


mirna_id: mmu-mir-135b
hairpin:
------c     --                   CAU          uug ug 
       gcucu  gcuguggccUAUGGCUUUU   UCCUAUGUGA   c  c
       |||||  |||||||||||||||||||   ||||||||||   |   
       cgggg  ugacaucGGGUACCGAAAA   GGGAUGUAcu   g  u
ccucgaa     ag                   -UC          caa cc 


mirna_id: rno-mir-151
hairpin:
--------------a   cu      c            CA          u uc 
               gcg  uuccug ccUCGAGGAGCU  CAGUCUAGUa g  u
               |||  |||||| ||||||||||||  |||||||||| |  c
               ugc  agggac GGAGUUCCUCGG  GUCAGAUCau c  c
gcccuccacucauac   -u      a            -A          c cu 


mirna_id: rno-mir-101b
hairpin:
aucugagac  -a  ug  c                    C A    --g  g 
         ug  ac  uc uuuuUCGGUUAUCAUGGUAC G UGCu   ua a
         ||  ||  || |||||||||||||||||||| | ||||   ||  
         ac  ug  gg aagAAGUCGAUAGUGUCAUG C AUgg   gu u
-------cu  cg  gu  u                    A -    aaa  c 


mirna_id: mmu-mir-101b
hairpin:
aucugagac  -a      c                  ACCGAU      g  c 
         ug  acugcc uuuuUCGGUUAUCAUGGU      GCUgua cu u
         ||  |||||| ||||||||||||||||||      |||||| || g
         ac  uggcgg aagAAGUCGAUAGUGUCA      UGACAU ga a
-------cu  cg      u                  ------      g  a 


mirna_id: hsa-mir-200c
hairpin:
  cu    -      A        U   u  ggu 
cc  CGUC UUACCC GCAGUGUU GGg gc   u
||  |||| |||||| |||||||| ||| ||    
gg  GUAG AAUGGG CGUCAUAA cuc ug   g
  AG    U      C        U   -  agg 


mirna_id: hsa-mir-1-1
hairpin:
u    a                gc     ---   a 
 ggga acauacuucuuuauau  ccaua   ugg c
 |||| ||||||||||||||||  |||||   ||| c
 cucU UGUAUGAAGAAAUGUA  GGUau   auc u
a    A                -A     cga   g 


mirna_id: mmu-mir-1a-2
hairpin:
u     c                AC     uga  a 
 cagag ACAUACUUCUUUAUGU  CCAUA   ac u
 ||||| ||||||||||||||||  |||||   || u
 guuuU UGUAUGAAGAAAUGUA  GGUau   ug c
-     A                -A     -cg  a 


mirna_id: osa-MIR156a
hairpin:
     g       -     -        a      uguu   uu     aau 
ggagg UGACAGA AGAGA GUGAGCAC cguggu    ucc  gcaua   g
||||| ||||||| ||||| |||||||| ||||||    |||  |||||   a
ccucc acugucu ucucu cacucgug gcaucg    agg  cguau   u
     -       c     u        c      ----   uu     ccg 


mirna_id: osa-MIR156b
hairpin:
u    --          a   --    ucua     uu   ----a  u        -             a      gcuu          - a 
 uguc  uugagagggg aga  gauc    ugggu  ugg     gg cUGACAGA AGAGAGUGAGCAC cacggu    ucuuagcaug c a
 ||||  |||||||||| |||  ||||    |||||  |||     || |||||||| ||||||||||||| ||||||    |||||||||| |  
 acag  gacucucuuc ucu  uuag    acccg  acc     cC GACUGUCU UCUCUCACUCGug gugucg    agggucguac g g
g    uu          c   aa    uaua     -u   acuug  -        A             c      ----          c a 


mirna_id: osa-MIR156c
hairpin:
            gg u       g ---          -     -               gacu   uu     cu aa 
ggaggaagagag  g gagaggu a   ggcUGACAGA AGAGA GUGAGCACacauggu    uuc  gcaug  g  u
||||||||||||  | ||||||| |   |||||||||| ||||| |||||||||||||||    |||  |||||  |   
ccucuuucucuc  u cucucua u   cCGACUGUCU UCUCU CACUCGuguguaucg    aag  cguac  c  g
            uu -       g uua          C     U               ----   uu     -u ag 


mirna_id: osa-MIR156d
hairpin:
    --a      cau    ------u        -   -         a     ugau  c   c   a 
ggag   agcucu   gaga       UGACAGAA GAG AGUGAGCAC cggcg    gg cgg aua a
||||   ||||||   ||||       |||||||| ||| ||||||||| |||||    || ||| ||| a
ccuc   ucggga   cucu       acugucuu cuc ucacucgug gccgc    cc gcc uau u
    aac      -cu    uucuccc        u   c         c     ---u  u   c   c 


mirna_id: osa-MIR156e
hairpin:
     ga          -   -         a     gggc          - g 
ggcgc  ggUGACAGAA GAG AGUGAGCAC cggcc    gugacggcac c g
|||||  |||||||||| ||| ||||||||| |||||    |||||||||| | c
ccgug  cuacugucuu cuc ucacucgug gccgg    cgcugccgug g g
     gc          u   g         c     ----          c g 


mirna_id: osa-MIR156f
hairpin:
           -    -        a       c  a   caucgaucuaucaaucuucccuucgacaggauagcuagauagaaagaaagagag 
aguUGACAGAA GAGA GUGAGCAC cagcggc ag cug                                                      g
||||||||||| |||| |||||||| ||||||| || |||                                                       
uCGACUGUCUU CUCU CACUCGug gucgccg uc gac                                                      c
           U    U        c       -  -   auaguaguaguaguaaaguagagagagagagagagagaagguaccggcggcugc 


mirna_id: osa-MIR156g
hairpin:
          -     -        a      gcagacugcaucugaauuaccuguug 
ggcUGACAGA AGAGA GUGAGCAC cagcgg                          c
|||||||||| ||||| |||||||| ||||||                           
uCGACUGUCU UCUCU CACUCGug guugcc                          g
          C     U        c      guucgacgcaggcagcagaagaagca 


mirna_id: osa-MIR156h
hairpin:
     u          -   -         a     c  c   u  c    g 
gagau guUGACAGAA GAG AGUGAGCAC cggcg gg ggc ag cauc g
||||| |||||||||| ||| ||||||||| ||||| || ||| || |||| c
cucua CGACUGUCUU CUC UCGCUCGug gccgc cc ccg uc guag g
     -          U   C         c     -  -   -  c    g 


mirna_id: osa-MIR156i
hairpin:
         -    -         a      g cgga       cgg 
ggUGACAGA AGAG AGUGAGCAC cggccg g    acggcac   c
||||||||| |||| ||||||||| |||||| |    |||||||    
cuacugucu ucuc ucacucgug gccggc c    ugccgug   g
         g    g         c      g ----       uag 


mirna_id: osa-MIR156j
hairpin:
          ----      uc   cau    aaggc     u          -   -         a     c  c   u  c    g 
uuggggcggg    gcggga  gag   auga     gagau guUGACAGAA GAG AGUGAGCAC cggcg gg ggc ag cauc g
||||||||||    ||||||  |||   ||||     ||||| |||||||||| ||| ||||||||| ||||| || ||| || |||| c
agccccgccc    cgcccu  cuc   uacu     cucua CGACUGUCUU CUC UCGCUCGug gccgc cc ccg uc guag g
          ccua      cc   -ac    -----     -          U   C         c     -  -   -  c    g 


mirna_id: osa-MIR160a
hairpin:
      C       C          a  u    ac     caug 
gugUGC UGGCUCC UGUAUGCCAc ca guag  caacc    g
|||||| ||||||| |||||||||| || ||||  |||||     
cGUACG ACCGAGG ACGUGCGgug gu cauc  guugg    u
      A       A          g  -    -c     ucug 


mirna_id: osa-MIR160b
hairpin:
     --uu  uuuu    --   uugaga      C       C              gu   cca     ugg 
aaggu    gg    gauc  ggc      gcgUGC UGGCUCC UGUAUGCCAcucau  agc   aucca   u
|||||    ||    ||||  |||      |||||| ||||||| ||||||||||||||  |||   |||||   g
uuccg    uc    cuag  ccg      cGUACG ACCGAGG ACGUGCGgugggug  ucg   uaggu   u
     ucuu  -ucu    ua   ----ug      A       A              --   ---     uug 


mirna_id: osa-MIR160c
hairpin:
         C       C         cu    -   a     aaa   c 
ggaaugUGC UGGCUCC UGUAUGCCA  cauc uag gcaac   cuu u
||||||||| ||||||| |||||||||  |||| ||| |||||   |||  
ccuuAUACG ACCGAGG ACGUGCGgu  guag auc cguug   gag g
         A       C         ag    u   -     -ga   c 


mirna_id: osa-MIR160d
hairpin:
gg  a     C       C         cu   -    cu       ucagu    -    c     ---    c 
  gg uaUGC UGGCUCC UGUAUGCCA  cgc guag  gccaaac     ugaa acaa ugccu   ucuc c
  || ||||| ||||||| |||||||||  ||| ||||  |||||||     |||| |||| |||||   |||| g
  cc GUACG ACCGAGG GCGUGCGgu  gcg cauc  cgguuug     gcuu uguu acgga   agag g
--  a     A       A         ag   u    -u       --cau    g    -     cuu    c 


mirna_id: osa-MIR162a
hairpin:
     ugc    gc    u            cc     u  c    ----   gcugauccaggagcggcgaauuucuuugagaggg 
gguga   cugg  gcag gguuuaucgauc  uuccc gc uugu    ggc                                  u
|||||   ||||  |||| ||||||||||||  ||||| || ||||    |||                                   
ccgcu   GACC  CGUC CCAAAUAGCUag  aaggg cg aaca    ccg                                  g
     cuu    UA    U            cu     -  c    gcaa   acguuguuccugguuuuccuucuuuuuuuuucuu 


mirna_id: osa-MIR164a
hairpin:
       --      c u        C   G        -   auau    aucauc    --u     -u  uc u -ua  u 
gugagaa  ggaccg g UGGAGAAG AGG CACGUGCA ugc    guuc      aucu   cuucc  cc  c c   gc c
|||||||  |||||| | |||||||| ||| |||||||| |||    ||||      ||||   |||||  ||  | |   ||  
cacucuu  ucuggc c accucuuc ucu gugcacgu acg    caag      uaga   gaagg  gg  g g   cg c
       uu      c u        c   g        c   --cu    -----a    uuu     uu  gu u uuc  a 


mirna_id: osa-MIR164b
hairpin:
    a           CA         CAuu        cuc  -c  c       
gugc cggUGGAGAAG  GGGCACGUG    accaucca   gc  ug cggccg 
|||| |||||||||||  |||||||||    ||||||||   ||  || ||||| c
cacg gccaccucuuc  cccguguac    ugguaggu   cg  ac gccggc 
    a           ug         uucu        -ac  uu  c       


mirna_id: osa-MIR166a
hairpin:
u         ugcu      u      UU         A          caccuugcgguuuugaggaugauu 
 gaagcuauu    ucugag GGAAUG  GUCUGGUUC AGGucucaug                        u
 |||||||||    |||||| ||||||  ||||||||| ||||||||||                        g
 cuucgauag    agacuC CCUUAC  CGGACCAGG Ucuagggugc                        u
a         ----      C      UU         C          cuacucuccuuacuuuuuggaacg 


mirna_id: osa-MIR166b
hairpin:
           cau    a        UU      CU     -    uuuua    -     -      -   --     cu     --c    uccuagcuu    u 
gggagccuuuu   uuug ggGGAAUG  GUCUGG  CGGGG cuac     auuu cucuc ucuuuu gau  aucuu  uuucu   gauc         gauc u
|||||||||||   |||| ||||||||  ||||||  ||||| ||||     |||| ||||| |||||| |||  |||||  |||||   ||||         ||||  
cccucgggaag   aaac CCCCUUAC  CGGACC  GCUcu gaug     uaga gagag agagaa cug  uagaa  aaaga   cuag         cuag u
           -ac    c        UU      AG     a    -ucug    u     u      a   ac     --     auu    cuaaacucu    u 


mirna_id: osa-MIR166c
hairpin:
g        -----        UU                aa    g   ggaauggcggauuc 
 gcaguuga     ggGGAAUG  GUCUGGUCCGAGaccu  cacc ggc              a
 ||||||||     ||||||||  ||||||||||||||||  |||| |||               
 ugucaacu     CCCCUUAC  CGGACCAGGCUuuggg  gugg ucg              g
u        caacc        UU                gg    a   aacgaaucgacguc 


mirna_id: osa-MIR166d
hairpin:
ga      uuc    u          UU      CU      g  uggagaaaccucugaucga 
  agcuuu   acuu gaggGGAAUG  GUCUGG  CGAGGu ca                   u
  ||||||   |||| ||||||||||  ||||||  |||||| ||                    
  ucgaaa   ugaa cuCCCCUUAC  CGGACC  GCUcua gu                   c
cc      ---    -          UU      AG      -  cagagaugucuaguuugga 


mirna_id: osa-MIR166e
hairpin:
          u      UU         A  Gc   uu     g  u   uuuu    guuua      ca 
uguuucuggg GGAAUG  GUCUGGUUC AG  ccc  aggau ug gau    gaug     ugcauu  u
|||||||||| ||||||  ||||||||| ||  |||  ||||| || |||    ||||     ||||||   
auagagacuC CCUUAC  CGGACCAAG Uc  ggg  uucua gc cua    cuac     gcguag  c
          C      UU         C  uu   -u     g  u   ---u    ---aa      uu 


mirna_id: osa-MIR166f
hairpin:
-    cauc        a      uc      c          a    a   gu 
 cgau    uuguugag ggaaug  gucugg cugagaucgu ccac gug  g
 ||||    |||||||| ||||||  |||||| |||||||||| |||| |||  g
 gcug    aacaacuC CCUUAC  CGGACC GGCUcuggca ggug cac  g
g    -cuc        C      UU      A          -    -   au 


mirna_id: osa-MIR167a
hairpin:
         u      A    C  -            uc     a  cg    --ug      uac    g 
uagugugaa gagUGA GCUG CA GCAUGAUCUAgc  ugauu au  gcac    uuggcg   aguc a
||||||||| |||||| |||| || ||||||||||||  ||||| ||  ||||    ||||||   ||||  
gucacacuu UUUACU CGAC GU CGUACUAgauug  acuaa ug  ugug    gacugc   ucag u
         c      C    A  A            uc     a  ug    ucua      uaa    u 


mirna_id: osa-MIR167b
hairpin:
        g  -a   -c         - -               --u  ag  -a    auc   -      c    g    ga 
gugcccaa ag  aag  gUGAAGCUG C CAGCAUGAUCUAacu   gc  ac  agaa   agc ucagcu gcug uuuc  a
|||||||| ||  |||  ||||||||| | |||||||||||||||   ||  ||  ||||   ||| |||||| |||| ||||   
cacggguu uc  uuc  cacuuugac g gucguacuagauugg   ug  ug  ucuu   ucg agucga cggc gaag  c
        g  cc   cu         a u               uag  ca  ag    -cu   g      u    g    ga 


mirna_id: osa-MIR167c
hairpin:
u      ----     c      A      --             ucuga       a      ------gu    -----     cug 
 guccaa    gggaa gagUGA GCUGCC  AGCAUGAUCUAgc     augauca caagau        gcuc     ccaca   c
 ||||||    ||||| |||||| ||||||  |||||||||||||     ||||||| ||||||        ||||     |||||   c
 cggguu    cccuu uUCACU CGACGG  UCGUACUGGaucg     uacuggu guucug        cgag     ggugu   u
a      guua     c      C      CG             uuccg       -      aucguugu    uucua     ccu 


mirna_id: osa-MIR169a
hairpin:
    ---   -     g    u    u   a     u    C         UG          c   c   cu       --a       
cgcc   ggc ggccu acau ggga cgg ggcca ggug AGCCAAGGA  ACUUGCCGAu gau gau  aucuaug   agcuaa 
||||   ||| ||||| |||| |||| ||| ||||| |||| |||||||||  |||||||||| ||| |||  |||||||   ||||| g
gcgg   ccg ccgga ugua uccu guc ccggu cuac ucgguucuu  ugaacgguua cua cua  uagguac   ucgauc 
    ugu   g     a    c    c   c     u    a         gu          a   c   cc       cgg       


mirna_id: osa-MIR171a
hairpin:
---    a  gc          a         c   g           ag 
   ggaa ga  gauauuggug gguucaauc gau auugguuuuac  c
   |||| ||  |||||||||| ||||||||| ||| |||||||||||  a
   ccuu cu  CUAUAACCGC CCGAGUUAG cua ugacuaaaaug  g
ucu    -  --          G         U   -           gu 


mirna_id: hsa-mir-155
hairpin:
              C   A        -u   c 
cugUUAAUGCUAAU GUG UAGGGGUu  uug c
|||||||||||||| ||| ||||||||  |||  
gACAAUUACGAUUA UAC AUCCUCag  aac u
              -   -        uc   c 


mirna_id: hsa-mir-181b-2
hairpin:
cuga   -     cucAA         CU           u  gu 
    ugg cugca     CAUUCAUUG  GUCGGUGGGUu ga  c
    ||| |||||     |||||||||  ||||||||||| ||  u
    acc ggcgu     guaaguaac  uagucacucaa cu  g
acaa   a     caaac         --           -  aa 


mirna_id: mmu-mir-107
hairpin:
-             --c    U  U           C   u   a 
 uucucugugcuuu   AGCU CU UACAGUGUUGC UUG ggc u
 |||||||||||||   |||| || ||||||||||| ||| ||| g
 gagagacacgaaA   UCGG GA AUGUUACGACG Aac uug g
c             CUA    -  C           -   -   a 


mirna_id: mmu-mir-10a
hairpin:
-----gacc   --c    uu        A    G     C          uaaggaa 
         ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
         |||   ||||  |||||||| |||| ||||| ||||||||||        
         aca   acag  gauguAUA GGGG AUCUA GCUUAAACac       u
acucgccuc   aau    uu        A    -     U          ugguguu 


mirna_id: mmu-mir-17
hairpin:
     a       -CA       UA  G     GUAGu    u 
gucag auaaugu   AAGUGCU  CA UGCAG     gaug g
||||| |||||||   |||||||  || |||||     ||||  
caguc uauuacG   UUCACGG  GU ACGUC     cuac u
     g       AUG       GA  G     ---Au    g 


mirna_id: mmu-mir-19a
hairpin:
    c  u                 --      ---    ag 
gcag cc cuguUAGUUUUGCAUAG  UUGCAC   UACa  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 


mirna_id: mmu-mir-25
hairpin:
    a ug   ag    G     UU G     U   --  ac 
ggcc g  uug  AGGC GAGAC  G GCAAU GCu  gg  g
|||| |  |||  |||| |||||  | ||||| |||  ||  c
ccgg c  gac  UCUG CUCUG  C CGUUA Cgg  cc  u
    c gu   AG    G     UU A     -   gu  cg 


mirna_id: mmu-mir-28a
hairpin:
   c   a     A  G             ----UU     gcc 
ggu ccu ccuuc AG AGCUCACAGUCUA      GAGuu   u
||| ||| ||||| || |||||||||||||      |||||    
uca gga gggAG UC UCGAGUGUUAGAU      cuuag   u
   c   c     G  G             CACccu     ucu 


mirna_id: mmu-mir-32
hairpin:
        UG     U            - uu  c 
ggagaUAU  CACAU ACUAAGUUGCAu g  gu a
||||||||  ||||| |||||||||||| |  ||  
cuuUUAUA  GUGUG UGAUUUAACgua c  cg c
        GU     -            a uc  g 


mirna_id: mmu-mir-100
hairpin:
    -uu c    A   CG    UC   A      c  au 
ccug   g caca ACC  UAGA  CGA CUUGUG ug  u
||||   | |||| |||  ||||  ||| |||||| ||   
ggau   c gugU UGG  AUCU  GUU GAACAc ac  c
    ugu u    A   AU    GU   C      -  gu 


mirna_id: mmu-mir-139
hairpin:
gug       -   U  A            g gg 
   uauUCUA CAG GC CGUGUCUCCAGu u  c
   ||||||| ||| || |||||||||||| |  u
   auGAGGU GUC CG GCGCAGAGGUcg a  c
-ca       U   C  -            g gg 


mirna_id: mmu-mir-200c
hairpin:
  cu    -      A        U   u   gg 
cc  CGUC UUACCC GCAGUGUU GGg gcu  u
||  |||| |||||| |||||||| ||| |||  u
gg  GUAG AAUGGG CGUCAUAA cuc uga  g
  AG    U      C        U   -   gg 


mirna_id: mmu-mir-210
hairpin:
cc  gg -a  cc u     cu    a     A   CC   -      C  c   gc 
  gg  c  gu  c ccagg  cagg cAGCC CUG  CAC CGCACA UG guu  u
  ||  |  ||  | |||||  |||| ||||| |||  ||| |||||| || |||   
  cc  g  cg  g ggucc  gucu GUCGG GAC  GUG GCGUGU ac cag  c
--  aa cg  ac -     cu    A     C   -A   U      C  c   gc 


mirna_id: mmu-mir-212
hairpin:
    -  c   c   -cA  U     CU      C      ccc  g 
gggc ag gcg cgg   CC UGGCU  AGACUG UUACUg   gg c
|||| || ||| |||   || |||||  |||||| ||||||   ||  
cccg uc cgc gcc   GG ACUGA  UCUGAC AAUgac   cc c
    g  -   a   ACC  C     CC      -      -uu  g 


mirna_id: mmu-mir-181a-1
hairpin:
    -   uc  u A   U      CU       A    ggaau 
gguu gcu  ag g ACA UCAACG  GUCGGUG GUuu     u
|||| |||  || | ||| ||||||  ||||||| ||||     c
ccaa cga  uc C UGU AGUUGC  CAGCUAC CAaa     a
    u   ua  C A   U      --       -    aauaa 


mirna_id: mmu-mir-216a
hairpin:
u    u         CU   A        --   uc 
 uggu UAAUCUCAG  GGC ACUGUGAg  aug  c
 |||| |||||||||  ||| ||||||||  |||  c
 aucG AUUAGGGUC  CUG UGACACuc  uac  u
a    U         -U   G        cu   ua 


mirna_id: mmu-mir-218-1
hairpin:
gugauaaugga   a   u      U         CU        ---g   gcg 
           gcg gau uucugU GUGCUUGAU  AACCAUGU    cuu   a
           ||| ||| |||||| |||||||||  ||||||||    |||   g
           cgc cug aaggua CACGAACUG  UUGGUACA    gag   g
acaucuuucga   a   c      C         CC        AAaa   uau 


mirna_id: mmu-mir-218-2
hairpin:
gac   uu -cc   gg       uUU         CU        gguggaacga  g 
   cag  g   gcg  gcuuucc   GUGCUUGAU  AACCAUGU          ug a
   |||  |   |||  |||||||   |||||||||  ||||||||          ||  
   guc  c   cgc  cgaaagG   CACGAACUG  UUGGUACa          gc a
-ac   cu ucu   ua       CGC         UC        --------ag  a 


mirna_id: mmu-mir-219-1
hairpin:
---------ccguccc    c       cU   U     A            a   ucu 
                gggc gcggcuc  GAU GUCCA ACGCAAUUCUcg guc   g
                |||| |||||||  ||| ||||| |||||||||||| |||   g
                cccg cgccgaG  CUG CAGGU UGCGUUGAGAgc cgg   c
gggggagcuccaaacc    c       CC   -     C            -   ccu 


mirna_id: mmu-mir-223
hairpin:
u    ccaucu   -gu        cC U              GAGUUG         u 
 cugg      gca   gucacgcu  G GUAUUUGACAAGCU      gacacucug g
 ||||      |||   ||||||||  | ||||||||||||||      ||||||||| u
 gacu      cgu   cgguguga  C CAUAAACUGUUUGA      CUGUgagau g
-    ---auc   acu        AC C              ------         g 


mirna_id: mmu-mir-320
hairpin:
gccucg    --   ---c         UU       C      g 
      ccgc  ccu    cGCCUUCUC  CCCGGUU UUCCcg a
      ||||  |||    |||||||||  ||||||| ||||||  
      ggug  gga    GCGGGAGAG  GGGUCGA AAgggc g
-----g    ua   aaaA         UU       A      u 


mirna_id: mmu-mir-26a-2
hairpin:
g     gg ug  UU         C          --   uc 
 gcugc  c  ga  CAAGUAAUC AGGAUAGGCU  gug  c
 |||||  |  ||  ||||||||| ||||||||||  |||   
 cgacg  g  CU  GUUCAUUAG UCUUGUCCgg  uac  g
g     ga gu  UU         U          ag   cu 


mirna_id: mmu-mir-33
hairpin:
              A UU         guucu  c 
cugugGUGCAUUGU G  GCAUUGCAu     gg a
|||||||||||||| |  |||||||||     || a
ggCACUACGUGACA C  UGUAACgug     cc u
              C UU         ----u  a 


mirna_id: mmu-mir-211
hairpin:
-    -u    ccu      ug               CA     U    ag  cu 
 cugc  ugga   gugacc  ugggcUUCCCUUUGU  UCCUU GCCU  gc  c
 ||||  ||||   ||||||  |||||||||||||||  ||||| ||||  ||   
 gacg  aucu   cacugg  acuCGGGGGGAAACG  AGGAA CGga  ug  u
a    uc    --c      ug               AC     -    -g  ag 


mirna_id: mmu-mir-221
hairpin:
a       cugg   a    -  UG   U         AUUU    -   u 
 uccaggu    ggc ugaA CC  GCA ACAAUGUAG    CUGU guu g
 |||||||    ||| |||| ||  ||| |||||||||    |||| ||| u
 aggucca    ucg aCUU GG  CGU UGUUACAUC    GAca cgg u
a       ----   g    U  GU   C         ----    a   a 


mirna_id: mmu-mir-222
hairpin:
-  c    u              -     AUC   ucuu 
 cc ucag ggcUCAGUAGCCAG UGUAG   CUg    u
 || |||| |||||||||||||| |||||   |||    g
 gg gguc cUGGGUCAUCGGUC ACAUC   gac    g
c  u    u              U     GAc   uaau 


mirna_id: mmu-mir-224
hairpin:
       UA         U   U      a u   ug  uu 
gggcuuu  AGUCACUAG GGU CCGUUu g aga  gu  g
|||||||  ||||||||| ||| |||||| | |||  ||   
cccgaaA  UCAGUGAUC CCG GGUAAA c uuu  ua  u
       CA         -   U      a -   gu  cg 


mirna_id: mmu-mir-29b-2
hairpin:
         -          C      G  U    Uuuucc 
cuucuggaa gCUGGUUUCA AUGGUG CU AGAU      a
||||||||| |||||||||| |||||| || ||||       
gaggauuUU UGACUAAAGU UACCAC GA Ucua      u
         G          U      -  -    uguuuc 


mirna_id: mmu-mir-199a-2
hairpin:
uggaa   uca  aga    -    c   gcC       U        C   --UCa  ac 
     gcu   gg   uccu gcuc guc   CCAGUGU CAGACUAC UGU     gg  a
     |||   ||   |||| |||| |||   ||||||| |||||||| |||     ||   
     cga   cc   ggga cggg cag   GGUUACA GUCUGAUG ACA     cc  a
----a   ---  ---    a    u   AUU       C        -   uguug  gu 


mirna_id: mmu-mir-199b
hairpin:
cca    -auacc    cu  -     C       U        C   U  ----  a 
   gagg      ucca  cc gucua CCAGUGU UAGACUAC UGU Ca    gg c
   ||||      ||||  || ||||| ||||||| |||||||| ||| ||    ||  
   cucc      gggu  gg cggAU GGUUACA GUCUGAUG ACA gu    cc u
-gg    cagauu    cg  u     U       C        -   u  uaaa  c 


mirna_id: mmu-mir-135a-2
hairpin:
a  uaaa     ucua   c            U            -u gua 
 ga    uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA  c   a
 ||    |||||    ||| |||||||||||| ||||||||||||  |    
 cu    aagug    cau AAGUACCGAAGG UAGGGAUGUacu  g   u
a  -uaa     -uua   a            -            cu aaa 


mirna_id: mmu-mir-124-2
hairpin:
a     au   ----  a         cC        A   GA        uaau 
 ucaag  cag    ag cucugcucu  GUGUUCAC GCG  CCUUGAUu    g
 |||||  |||    || |||||||||  |||||||| |||  ||||||||    u
 aguuc  guc    uc gaggcgaga  CGUAAGUG CGC  GGAAUuaa    c
a     ac   ggca  c         aC        G   AC        caua 


mirna_id: mmu-mir-19b-1
hairpin:
    ggu                 -  -      UC    uguau 
cacu   cuaugguuAGUUUUGCA GG UUUGCA  CAGC     a
||||   ||||||||||||||||| || ||||||  ||||     a
gugg   ggugucAGUCAAAACGU CC AAACGU  GUcg     u
    --u                 A  U      --    ucuua 


mirna_id: mmu-mir-92a-1
hairpin:
---cu   uac            UU  C           uuu 
     uuc   acAGGUUGGGAU  GU GCAAUGCUgug   c
     |||   ||||||||||||  || |||||||||||    
     gag   uGUCCGGCCCUG  CA CGUUAUgguau   u
gguuu   --u            UU  -           guc 


mirna_id: mmu-mir-9-3
hairpin:
g    cc       -  C               G     gu  ca 
 gagg  cguuucu cU UUUGGUUAUCUAGCU UAUGA  gc  c
 ||||  ||||||| || ||||||||||||||| |||||  ||   
 cucu  guaaaga GA AAGCCAAUAGAUCGA AUAcu  cg  a
a    ca       U  -               A     gc  ag 


mirna_id: mmu-mir-138-1
hairpin:
cucua   ug    u   -  a AG             UCA       gc a 
     gca  gugu gug gg c  CUGGUGUUGUGAA   GGCCGuu  c a
     |||  |||| ||| || |  |||||||||||||   |||||||  | u
     cgu  cacg cac cc G  GACCACAACACUU   UCGGCaa  g c
--gaa   --    u   a  - -G             -CA       ga a 


mirna_id: mmu-mir-181b-1
hairpin:
a       aucAA         CUG          gaa  g 
 ggucaca     CAUUCAUUG   UCGGUGGGUu   cu u
 |||||||     |||||||||   ||||||||||   ||  
 ccggugu     GUAAGUAAC   AGUCACUCga   ga g
-       -caaC         --A          aaa  u 


mirna_id: mmu-mir-181c
hairpin:
g   a  g       gAA        CU       A     ggca 
 cca gg uuugggg   CAUUCAAC  GUCGGUG GUuug    g
 ||| || |||||||   ||||||||  ||||||| |||||    c
 ggu cc gagccCC   GUGAGUUG  CAGCUAC CAaac    u
a   -  g       -AG        -C       -     agac 


mirna_id: mmu-mir-125b-1
hairpin:
ugcgcuccccu   UC  UG   C           Au     c 
           cag  CC  AGA CCUAACUUGUG  guuua c
           |||  ||  ||| |||||||||||  ||||| g
           gUC  GG  UCU GGAUUGGGCAc  uaaau u
-----------   GA  GU   C           -c     u 


mirna_id: mmu-mir-128-2
hairpin:
       a          AUG      AA    g gag 
caguggg agGGGGGCCG   CACUGU  GAGA u   u
||||||| ||||||||||   ||||||  |||| |    
gucaucc UUUCUCUGGC   GUGACA  CUcu g   a
       c          CAA      --    g acg 


mirna_id: hsa-mir-128-2
hairpin:
u ug       a          aua      ac    g gag 
 g  caguggg aggggggccg   cacugu  gaga u   u
 |  ||||||| ||||||||||   ||||||  |||| |    
 u  gucaucc UUUCUCUGGC   GUGACA  CUcu g   a
c gu       c          CAA      --    g acg 


mirna_id: mmu-mir-7a-1
hairpin:
--u    u  u     a  u        A     A       U      --     a 
   ugga gu ggccu gu cugugUGG AGACU GUGAUUU GUUGUu  uuuag u
   |||| || ||||| || |||||||| ||||| ||||||| ||||||  |||||  
   aucu ca ccgga ca gguAUACC UCUGA CACUAAA CAACag  aaauc a
gac    c  -     -  c        G     -       -      ca     a 


mirna_id: mmu-mir-7a-2
hairpin:
-  ucg       c    u   A     A U     U       ug cu 
 gg   ggccagc ccgu UGG AGACU G GAUUU GUUGUug  u  c
 ||   ||||||| |||| ||| ||||| | ||||| |||||||  |   
 cu   cuggucg gguA ACC UCUGA C CUGAA CAACaac  a  u
a  uua       u    C   G     C -     -       cu ug 


mirna_id: mmu-mir-7b
hairpin:
aggagcggaguacgu   -   g       U  AAGAC         U      c  au 
               gag cca ugcuaug GG     UUGUGAUUU GUUGUu ug  a
               ||| ||| ||||||| ||     ||||||||| |||||| ||   
               cuc ggu gcgauAC CC     GACACUGAA CAACag au  u
-----uuccacuauc   a   -       U  -GACC         -      u  ag 


mirna_id: mmu-mir-217
hairpin:
aaacauagucauuaca    uu       c  a  C     C         -CU    aag 
                guuu  gauguug ag UA UGCAU AGGAACUGA   GGAu   a
                ||||  ||||||| || || ||||| |||||||||   ||||    
                caaa  cuacgac UC GU ACGUA UCCUUGACU   ccua   c
--------------aa    -u       u  C  U     A         ACc    auu 


mirna_id: hsa-mir-194-2
hairpin:
-      c      cU         A      G    agu   c 
 ugguuc cgcccc  GUAACAGCA CUCCAU UGGA   gcc a
 |||||| ||||||  ||||||||| |||||| ||||   |||  
 accggg gcgggG  UAUUGUCGU GGGGUG ACCu   ugg c
g      a      UC         C      -    ---   u 


mirna_id: mmu-mir-194-2
hairpin:
g     c       cU         A      G    agu   c 
 uggcu ccacccu  GUAACAGCA CUCCAU UGGA   gcc a
 ||||| |||||||  ||||||||| |||||| ||||   |||  
 aucgg ggugggG  UAUUGUCGU GGGGUG ACCu   ugg c
g     c       UC         C      -    ---   u 


mirna_id: hsa-mir-106b
hairpin:
     c     -UA       G       A A    --  uc 
ccugc ggggc   AAGUGCU ACAGUGC G Uagu  gg  c
||||| |||||   ||||||| ||||||| | ||||  ||   
ggacg ccuCG   UUCAUGG UGUCACG C aucg  cc  u
     a     UCG       G       C -    ug  uc 


mirna_id: hsa-mir-30c-1
hairpin:
a     cu    ugu U       U   ACA         ---g  a 
 ccaug  guag   g GUAAACA CCU   CUCUCAGCu    ug g
 |||||  ||||   | ||||||| |||   |||||||||    ||  
 gguac  cguc   C CAUUUGU GGG   GAGGGUCgg    ac c
a     --    uuC U       U   --A         ugga  u 


mirna_id: hsa-mir-200a
hairpin:
c    - c   g        -            -----------     A 
 cggg c ccu ugagCAUC UUACCGGACAGU           GCUGG u
 |||| | ||| |||||||| ||||||||||||           ||||| u
 gccc g gga acuUGUAG AAUGGUCUGUCA           cgacc u
c    a u   a        C            CAAUcucaguu     c 


mirna_id: hsa-mir-302a
hairpin:
   c    U         U           gaa 
cca cACU AAACGUGGA GUACUUGCUuu   a
||| |||| ||||||||| |||||||||||   c
ggu GUGG UUUGUACCU CGUGAAUgaag   u
   A    U         U           aaa 


mirna_id: hsa-mir-101-2
hairpin:
  ug  c                    c a    guaua 
ac  uc uuuuucgguuaucaugguac g ugcu     u
||  || |||||||||||||||||||| | ||||      
ug  gg aagAAGUCAAUAGUGUCAUG C AUgg     c
  gu  u                    A -    aaagu 


mirna_id: hsa-mir-219-2
hairpin:
a   a       c     U   U     AA           uac a  c 
 cuc ggggcuu gccac GAU GUCCA  CGCAAUUCUug   g gu u
 ||| ||||||| ||||| ||| |||||  |||||||||||   | || g
 ggg ccucgag cggUG CUA CAGGU  GUGUUAAGAgc   c cg c
-   -       u     U   -     CG           caa -  g 


mirna_id: mmu-mir-219-2
hairpin:
a   a       c     U   U     AA           uac a  c 
 cuc ggggcuu gccac GAU GUCCA  CGCAAUUCUug   g gu u
 ||| ||||||| ||||| ||| |||||  |||||||||||   | || g
 ggg ccucgag uggUG CUA CAGGU  GUGUUAAGAgc   c cg c
-   -       u     U   -     CG           caa -  g 


mirna_id: hsa-mir-34b
hairpin:
     cg    -gUA       UCA    C        -  g 
gugcu  guuu    GGCAGUG   UUAG UGAUUGua cu u
|||||  ||||    |||||||   |||| |||||||| || g
cacgg  caaa    CCGUCAC   AAUC ACUAACau gg g
     aa    acUA       CUC    -        u  u 


mirna_id: hsa-mir-34c
hairpin:
     ag     A   A    A     C      C  a 
agucu  uuacu GGC GUGU GUUAG UGAUUG ua u
|||||  ||||| ||| |||| ||||| |||||| ||  
uuaga  aauGG CCG CACA CAAUC ACUAAc au a
     aa     A   G    C     -      c  g 


mirna_id: hsa-mir-299
hairpin:
     a                      uu 
aagaa UGGUUUACCGUCCCACAUACAU  u
||||| ||||||||||||||||||||||  g
uucUU GCCAAAUGGUAGGGUGUAUgua  a
     C                      ua 


mirna_id: hsa-mir-301a
hairpin:
a     aa  a     C    ---U          ----A       
 cugcu  cg auGCU UGAC    UUAUUGCACU     CUguac 
 |||||  || ||||| ||||    ||||||||||     ||||| u
 gacga  gu uaCGA ACUG    GAUAACGUGA     gacauu 
g     aa  c     A    UUAU          Cgauc       


mirna_id: hsa-mir-296
hairpin:
  ga      ca       C  C         G   ugc 
ag  cccuuc  gAGGGCC CC CUCAAUCCU Uug   c
||  ||||||  ||||||| || ||||||||| |||   u
uc  gggaag  CUCUCGG GG GGGUUGGGA Gac   a
  uc      uC       A  U         -   uua 


mirna_id: hsa-mir-130b
hairpin:
      c    cA       CC         A  --a   g 
ggccug ccga  CUCUUUC  UGUUGCACU Cu   uag c
|||||| ||||  |||||||  ||||||||| ||   |||  
cuggac ggcU  GGGAAAG  GUAACGUGA ga   guc c
      u    AC       UA         C  agg   g 


mirna_id: hsa-mir-30e
hairpin:
g        uu  ua            UU           g aag u 
 ggcagucu  gc  cUGUAAACAUCC  GACUGGAAGcu u   g g
 ||||||||  ||  ||||||||||||  ||||||||||| |   |  
 ccgucgga  cg  GACAUUUGUAGG  CUGACUUUCga g   c u
a        --  gC            --           g aga u 


mirna_id: hsa-mir-26a-2
hairpin:
      gg ug  UU         C          guuucc 
ggcugu  c  ga  CAAGUAAUC AGGAUAGGCU      a
||||||  |  ||  ||||||||| ||||||||||       
ucgacg  g  CU  GUUCAUUAG UCUUAUCCgg      u
      ga gu  UU         U          aguguc 


mirna_id: cbr-mir-72
hairpin:
u  a   --   cga  uA    -     U   AU      a   aaaucagaaaucgaaau 
 gg cuc  gcc   gc  GGCA GAUGU GGC  AGCuga ugc                 u
 || |||  |||   ||  |||| ||||| |||  |||||| |||                 c
 cc gag  cgg   cg  ccgu cuaca ccg  ucgacu gcg                 g
a  a   uu   aug  ua    g     -   cu      c   cgcuuuaaguuugaaaa 


mirna_id: cel-mir-353
hairpin:
uguugaaguauugcaaaagcaaa    ggg    AUU C     --           u          
                       ggac   caCA   G CAUGU  GUUGGUAUUau gcuucaagu 
                       ||||   ||||   | |||||  ||||||||||| |||||||| u
                       ccug   gugu   c guacg  uaacuauaaug cgaaguuua 
----------------------g    -aa    gcu u     aa           u          


mirna_id: cel-mir-354
hairpin:
         cuaagcaccuu  u     u       -    ucc  cuc  c   caua 
cagagccga           gg gcggc gcagacg ggua   gg   ga guu    c
|||||||||           || ||||| ||||||| ||||   ||   || |||     
guuuugguu           CC CGUCG UGUUUGU CCAu   cc   cu cag    a
         ---------aU  U     U       U    uuu  uuu  u   cacu 


mirna_id: cel-mir-355
hairpin:
-----aauaa      ---ga     a    U         -CU        ---ag  a 
          ugucaa     auuga uggU UGUUUUAGC   GAGCUAUG     uc u
          ||||||     ||||| |||| |||||||||   ||||||||     ||  
          gcaguu     uaacu accg acaaaaucg   uucgauac     ag c
aguuuuugaa      aauuc     a    u         uuc        guaua  g 


mirna_id: cel-mir-356a
hairpin:
-uaaaguu    ugag   a       U   CA   -  -   A    Aucaa  ua 
        uccu    aac auguggU GAG  ACG CG AAC AAUC     ug  a
        ||||    ||| ||||||| |||  ||| || ||| ||||     ||  a
        agga    uug uacacca cuc  ugc gc uug uuag     ac  u
aagacuuu    -uga   c       -   ug   a  a   c    --gcg  uu 


mirna_id: cel-mir-357
hairpin:
a   --ug       cacca     uC   A     -   C    A     gaaca 
 cgc    uacuacu     gcgga  CCU CAACG CUG GCAU UGCau     c
 |||    |||||||     |||||  ||| ||||| ||| |||| |||||     a
 gcg    augauga     cgcuU  GGA GUUGC GAC CGUA Augua     a
c   uaaa       -caua     GA   C     U   -    A     aaagu 


mirna_id: cel-mir-358
hairpin:
---aaac    --     cug c     -   C   C  U    C    aaacuuac 
       ucgc  gacgg   g gACCU GGC AGG AU CCAA UGUc        a
       ||||  |||||   | ||||| ||| ||| || |||| ||||        a
       agcg  uugcc   c CUGGA CUG UCC UA GGUU acag        a
uugcuua    ac     uaa U     A   -   C  U    A    cucuuucg 


mirna_id: cel-mir-359
hairpin:
--------aa  -    uu   a       -        u  c  a    u      ccu 
          ug cucc  gaa uuucaau cguuagag aa ac cagu acacga   c
          || ||||  ||| ||||||| |||||||| || || |||| ||||||   a
          ac gagg  cuu gaaguuA GCAGUCUC UU UG GUCA Ugugcu   u
guugguuuua  a    -u   -       A        U  C  -    C      aac 


mirna_id: cel-mir-360
hairpin:
cau   -guu       -au             C  UU          a   gcaa 
   ucu    aggaagc   caaugugUUGUGA CG  GUUACGGUCA uuu    a
   |||    |||||||   ||||||||||||| ||  |||||||||| |||     
   gga    ucuuuug   guuacauAACACU GC  UAAUGCCAGU aaa    u
--u   aacc       cuu             U  CC          a   aagu 


mirna_id: hsa-mir-361
hairpin:
     UU         --U  A    U     auaa 
ggagc  AUCAGAAUC   CC GGGG ACuuu    u
|||||  |||||||||   || |||| |||||     
cuucg  UAGUCUUAG   GG CCCC Ugaaa    u
     UU         UGU  A    C     aacu 


mirna_id: mmu-mir-361
hairpin:
     UU         --U  A    U    agua 
gaagc  AUCAGAAUC   CC GGGG ACuu    u
|||||  |||||||||   || |||| ||||     
cuuUG  UAGUCUUAG   GG CCCC Ugaa    u
     UU         UGU  A    C    aagu 


mirna_id: hsa-mir-362
hairpin:
c             ACC        -A Ug  a 
 uugAAUCCUUGGA   UAGGUGUG  G  cu u
 |||||||||||||   ||||||||  |  || u
 aACUUAGGAACUU   AUCCACAC  c  ga u
a             ---        AA gu  c 


mirna_id: mmu-mir-362
hairpin:
cuc           ACC        AA   u  u 
   gAAUCCUUGGA   UAGGUGUG  Ugc gc u
   |||||||||||   ||||||||  ||| ||  
   CUUAGGAACUU   GUCCACAC  Acg ug c
aaA           ---        -A   -  a 


mirna_id: hsa-mir-363
hairpin:
u   gu         CA  A         -----g   a 
 guu  CGGGUGGAU  CG UGCAAUUUu      aug g
 |||  |||||||||  || |||||||||      ||| u
 caa  GUCUACCUA  GC ACGUUAAaa      uac a
c   AU         UG  -         agagga   u 


mirna_id: mmu-mir-363
hairpin:
u   au        -  A  A         gg  ggug 
 guu  CAGGUGGA AC CG UGCAAUUUu  uu    u
 |||  |||||||| || || |||||||||  ||     
 caa  GUCUACCU UG GC ACGUUAAaa  ag    a
c   AU        A  -  -         gg  gaua 


mirna_id: hsa-mir-365a
hairpin:
acc      aa        AC           ----   -   uuu 
   gcaggg  aaugAGGG  UUUUGGGGGCA    GAU GUG   c
   ||||||  ||||||||  |||||||||||    ||| |||   c
   cguucu  uUAUUCCU  AAAAUCCCCGU    cua cac   a
--a      cg        -A           AAUa   u   cuu 


mirna_id: mmu-mir-365-1
hairpin:
acc      aa        AC           GA    uuucca 
   gcaggg  aaugAGGG  UUUUGGGGGCA  UGUG      u
   ||||||  ||||||||  |||||||||||  ||||      u
   cguucu  uUAUUCCU  AAAAUCCCCGU  AUac      c
--a      cg        -A           -A    uaucgc 


mirna_id: hsa-mir-365b
hairpin:
agaguguucaa g   --       a        AC   C       -----    U   u 
           g aca  gcaagaa aaugAGGG  UUU AGGGGCA     GCUG guu u
           | |||  ||||||| ||||||||  ||| |||||||     |||| |||  
           c ugu  cguucuu uUAUUCCU  AAA UCCCCGU     ugac cag c
-----gggcua g   ga       g        AA   -       AAUac    u   u 


mirna_id: hsa-mir-302b
hairpin:
     cuuca   UU          UG   U  guga 
gcucc     ACU  AACAUGGAAG  CUU Cu    c
|||||     |||  ||||||||||  ||| ||    u
ugagG     UGA  UUGUACCUUC  GAA ga    u
     ----A   UU          GU   U  aaau 


mirna_id: hsa-mir-302c
hairpin:
    ug  UU             C    -G  u 
ccuu  cU  AACAUGGGGGUAC UGCU  ug g
||||  ||  ||||||||||||| ||||  || a
ggaG  GA  UUGUACCUUCGUG AUga  ac a
    GU  CU             A    aa  a 


mirna_id: hsa-mir-302d
hairpin:
  u u    U                ---C   ga 
cc c ACUU AACAUGGAGGCACUUG    ugu  c
|| | |||| ||||||||||||||||    |||   
gg G UGAG UUGUACCUUCGUGAAU    aca  a
  U -    U                aaaa   gu 


mirna_id: hsa-mir-367
hairpin:
                UA     C    uugaa 
ccauuACUGUUGCUAA  UGCAA UCUg     u
||||||||||||||||  ||||| ||||      
gguAGUGGUAACGAUU  ACGUU Aggu     a
                UC     A    uaaau 


mirna_id: hsa-mir-376c
hairpin:
    G     UA     U         uguua 
aaaa GUGGA  UUCCU CUAUGUUua     u
|||| |||||  ||||| |||||||||     u
uuuU CACCU  AAGGA GAUACAAau     u
    G     UA     -         uggua 


mirna_id: hsa-mir-369
hairpin:
u   ag               UA      Cuuua 
 uga  ggAGAUCGACCGUGU  UAUUCG     u
 |||  |||||||||||||||  ||||||      
 acu  UUUCUAGUUGGUACA  AUAAgc     u
g   cu               UA      uucag 


mirna_id: hsa-mir-370
hairpin:
      agaa       ca gu   u    u   a ag 
agacag    gccaggu  c  cuc gcag uac c  c
||||||    |||||||  |  ||| |||| ||| |  u
ucuguc    UGGUCCA  G  GGG CGUC Gug g  c
      ----       AG UG   U    C   a ca 


mirna_id: hsa-mir-371a
hairpin:
            CU    G         u   c 
guggcACUCAAA  GUGG GGCACUuuc gcu u
||||||||||||  |||| ||||||||| |||  
cauUGUGAGUUU  UACC CCGUGAAag ugg c
            UC    G         -   u 


mirna_id: hsa-mir-372
hairpin:
gug   -         g -      a    gaug 
   ggc cucaaaugu g agcacu uucu    u
   ||| ||||||||| | |||||| ||||    c
   cUG GAGUUUACA C UCGUGA AAgg    c
-ca   C         G G      -    ugaa 


mirna_id: hsa-mir-373
hairpin:
         -     G            uuuuug 
gggauACUC AAAAU GGGGCGCUUUCC      u
||||||||| ||||| ||||||||||||       
cccUGUGGG UUUUA CUUCGUGAAGgg      c
         G     G            ucaugu 


mirna_id: hsa-mir-374a
hairpin:
     c   c            C           u 
uacau ggc aUUAUAAUACAA CUGAUAAGUGu a
||||| ||| |||||||||||| |||||||||||  
augug cug UAAUGUUAUGUU GACUAUUCacg u
     u   U            A           a 


mirna_id: hsa-mir-375
hairpin:
c  -    a      ccu  c     c  gac 
 cc cgcg cgagcc   cg acaaa cg   c
 || |||| ||||||   || ||||| ||    
 gg GUGC GCUCGG   GC UGUUU gc   u
c  A    -      CUU  U     u  gag 


mirna_id: hsa-mir-376a-1
hairpin:
u    g  A    C    U      --GUA   u 
 aaaa GU GAUU UCCU CUAUGA     cau a
 |||| || |||| |||| ||||||     ||| u
 uuuU CA CUAA AGGA GAUACU     gua u
c    G  C    A    -      Aauua   u 


mirna_id: hsa-mir-377
hairpin:
uu              C   -    A    - uuu 
  gagcAGAGGUUGCC UUG GUGA UUCg c   a
  |||||||||||||| ||| |||| |||| |   u
  uuUGUUUUCAACGG AAC CACU Aagu g   u
-g              A   A    -    u uau 


mirna_id: hsa-mir-378a
hairpin:
   g  C              UGU      ccu 
agg CU CUGACUCCAGGUCC   GUguua   a
||| || ||||||||||||||   ||||||    
ucc GA GACUGAGGUUCAGG   CAcgau   g
   G  A              --U      aaa 


mirna_id: hsa-mir-379
hairpin:
    a    A       GA       -  uu u 
agag UGGU GACUAUG  ACGUAGG cg  a g
|||| |||| |||||||  ||||||| ||  |  
ucUC AUCA CUGGUAC  UGUAUcc gu  u a
    A    C       AA       a  cu u 


mirna_id: hsa-mir-380
hairpin:
      GUU       GA       C   c 
aagaUG   GACCAUA  ACAUGCG uau u
||||||   |||||||  ||||||| |||  
UUCUAC   CUGGUAU  UGUAUgc gug c
      -AC       AA       u   u 


mirna_id: hsa-mir-381
hairpin:
      a  C   G        U        --g   u 
uacuua AG GAG UUGCCCUU GUAUAUuc   guu a
|||||| || ||| |||||||| ||||||||   |||  
augagU UC CUC AACGGGAA CAUAUaag   cag u
      G  U   G        -        gua   u 


mirna_id: hsa-mir-382
hairpin:
    u       -A           UG      - uuu 
uacu gaagaGA  GUUGUUCGUGG  GAUUCG c   a
|||| |||||||  |||||||||||  |||||| |   c
auga cuuuuUU  CAACAGGCACU  CUAAgc g   u
    -       CA           UA      a uau 


mirna_id: hsa-mir-383
hairpin:
   -c  A      AA    A        uug   gga 
cuc  uc GAUCAG  GGUG UUGUGGCU   ggu   u
|||  || ||||||  |||| ||||||||   |||    
gag  ag cugguc  ucac gacaccga   cua   a
   aa  a      cg    -        ---   auu 


mirna_id: mmu-mir-375
hairpin:
c  -    A      CCU  C     C  gac 
 cc cGCG CGAGCC   CG ACAAA cg   c
 || |||| ||||||   || ||||| ||    
 gg GUGC GCUCGG   GC UGUUU gc   u
c  A    -      CUU  U     u  gag 


mirna_id: mmu-mir-376a
hairpin:
u    G  A    C    U      GUacaaua 
 aaaa GU GAUU UCCU CUAUGA        u
 |||| || |||| |||| ||||||        u
 uuuU CA CUAA AGGA GAUGCU        a
c    G  C    A    -      Aaucagua 


mirna_id: mmu-mir-377
hairpin:
u              C   -    A    - uuu 
 gagcAGAGGUUGCC UUG GUGA UUCg c   a
 |||||||||||||| ||| |||| |||| |   u
 uuUGUUUUCAACGG AAC CACU Aagu g   u
g              A   A    -    u uag 


mirna_id: mmu-mir-378a
hairpin:
   g  C              UGU      ccu 
agg CU CUGACUCCAGGUCC   GUguua   c
||| || ||||||||||||||   ||||||    
ucc GA GACUGAGGUUCAGG   CAcgau   g
   G  A              --U      aaa 


mirna_id: mmu-mir-379
hairpin:
    a    A       GA       -  uua 
agag UGGU GACUAUG  ACGUAGG cg   u
|||| |||| |||||||  ||||||| ||   g
ucUC AUCA CUGGUAC  UGUAUcc gu   u
    A    C       AA       a  uuu 


mirna_id: mmu-mir-380
hairpin:
      GUU       GA       c   u 
aagAUG   GACCAUA  ACAUGCG uac u
||||||   |||||||  ||||||| |||  
UUCUAC   CUGGUAU  UGUAUgc gug c
      -AC       GA       u   u 


mirna_id: mmu-mir-381
hairpin:
      a  C   G        U        --g   u 
uacuua AG GAG UUGCCCUU GUAUAUUc   guu a
|||||| || ||| |||||||| ||||||||   |||  
augagU UC CUC AACGGGAA CAUAUaag   cag u
      G  U   G        -        gua   u 


mirna_id: mmu-mir-382
hairpin:
    u       -A           UG      - uuu 
uacu gaagaGA  GUUGUUCGUGG  GAUUCG c   a
|||| |||||||  |||||||||||  |||||| |   c
auga cuUUUUU  CAACAGGCACU  CUaagc g   u
    -       CA           UA      a ugu 


mirna_id: mmu-mir-383
hairpin:
----cucA      AA    A        uug   gga 
        GAUCAG  GGUG CUGUGGCU   ggu   u
        ||||||  |||| ||||||||   |||    
        CUGGUC  UCAC GACACCga   cua   a
gagaaAGA      CG    -        ---   auu 


mirna_id: cel-lsy-6
hairpin:
c    -          a   u       a   aaaaa 
 cauc aaaugcgucu gua caaaauc ugu     c
 |||| |||||||||| ||| ||||||| |||      
 guaG UUUACGCAGA UAU GUUUUag aca     u
a    C          G   -       -   aaaug 


mirna_id: hsa-mir-340
hairpin:
--uu     u      aU       -CAA      U    g     ug 
    guacc ggugug  UAUAAAG    UGAGAC GAUU ucaua  u
    ||||| ||||||  |||||||    |||||| |||| |||||  c
    uaugg ccauac  AUAUUUC    ACUCUG CUag ggugu  g
auuc     u      CG       AUUG      C    -     uu 


mirna_id: hsa-mir-330
hairpin:
cuuu   -  u a           --    -    U   AG    ugcaa 
    ggc ga c cugccUCUCUG  GGCC UGUG CUU  GCuc     g
    ||| || | |||||||||||  |||| |||| |||  ||||     a
    ccg cu g gacggAGAGAC  CCGG ACAC GAA  CGag     u
---c   u  c c           GU    C    -   -A    ccaac 


mirna_id: hsa-mir-328
hairpin:
--u  ag           ga     u     a aaa  g 
   gg  ugggggggcag  ggggc caggg g   gu c
   ||  |||||||||||  ||||| ||||| |   ||  
   cc  GCCUUCCCGUC  UCCCG GUCcc c   ca a
guc  cU           UC     -     - -ga  u 


mirna_id: hsa-mir-342
hairpin:
gaaac     u        G      --UA      AUUGA      ugg  a 
     ugggc caaggugA GGGUGC    UCUGUG     gggaca   uu a
     ||||| |||||||| ||||||    ||||||     ||||||   ||  
     auccg guuccacU CCCACG    AGACAC     CUCUgu   ag u
-auuc     -        G      CUAA      ----A      -ua  g 


mirna_id: hsa-mir-337
hairpin:
guagucagua uu         -   C   U     C        -   ca 
          g  ggggggugg GAA GGC UCAUA AGGAGUUg aug  c
          |  ||||||||| ||| ||| ||||| |||||||| |||   
          c  uccccuaCU CUU CCG AGUAU UCCUCgac uau  a
--------aa -u         U   U   U     A        c   ug 


mirna_id: hsa-mir-323a
hairpin:
---uu      u g        G U     GCGC  U    uua 
     gguacu g agagAGGU G CCGUG    GU CGCu   u
     |||||| | |||||||| | |||||    || ||||    
     cuauga c uuUCUCCA C GGCAC    CA gcgg   u
cuaau      - g        G U     AUUA  C    uau 


mirna_id: hsa-mir-326
hairpin:
cuc        guu          c       uugu  a     -g  g 
   aucugucu   gggcuggagg agggccu    ga ggcgg  ug u
   ||||||||   |||||||||| |||||||    || |||||  || g
   uaggcgga   cccGACCUCC UCCCGGG    CU CCgcu  ac c
acu        -gc          U       ---U  -     ag  u 


mirna_id: hsa-mir-151a
hairpin:
---------------u      c            CA          u ucu 
                uuccug ccUCGAGGAGCU  CAGUCUAGUa g   c
                |||||| ||||||||||||  |||||||||| |    
                agggac GGAGUUCCUCGA  GUCAGAUCau c   a
cuccacucauacuggu      a            -A          c ccu 


mirna_id: hsa-mir-135b
hairpin:
-------ca    -                   CAU          --   cu 
         cucu gcuguggccUAUGGCUUUU   UCCUAUGUGA  uug  g
         |||| |||||||||||||||||||   ||||||||||  |||   
         ggga ugacaucGGGUACCGAAAA   GGGAUGUAcu  aac  u
ccucgagcg    g                   -UC          ca   cc 


mirna_id: hsa-mir-148b
hairpin:
caagcac  uu   a       ug         U  A    CA    gugg u 
       ga  agc uuugagg  AAGUUCUGU AU CACU  GGCu    c c
       ||  ||| |||||||  ||||||||| || ||||  ||||    | u
       cu  ucg aagcucU  UUCAAGACA UA GUGA  CUga    g c
-----au  -u   a       GU         C  C    --    --aa u 


mirna_id: hsa-mir-331
hairpin:
gaguuugguuuu         u        U    U       AU Ccaga 
            guuuggguu guuCUAGG AUGG CCCAGGG  C     u
            ||||||||| |||||||| |||| |||||||  |     c
            cgaauccaa cAAGAUCC UAUC GGGUCCC  g     a
----------cu         c        -    C       CG accaa 


mirna_id: hsa-mir-324
hairpin:
cu      gc     C   U C   A     U   U  aaag 
  gacuau  cuccc GCA C CCU GGGCA UGG GU    c
  ||||||  ||||| ||| | ||| ||||| ||| ||     
  cugaug  gggGG CGU G GGA CCCGU Acc ca    u
--      uu     U   C U   C     C   -  gagg 


mirna_id: hsa-mir-338
hairpin:
   c      U   -         -   Gauga 
ucu cAACAA AUC CUGGUGCUG AGU     c
||| |||||| ||| ||||||||| |||     u
aga GUUGUU UAG GACUACGAC Uca     c
   a      U   U         C   gcgga 


mirna_id: hsa-mir-339
hairpin:
----------c       c    cU C     C  C   A       u  g 
           ggggcgg cgcu  C CUGUC UC AGG GCUCACG gu c
           ||||||| ||||  | ||||| || ||| ||||||| ||  
           ccccguc gcgG  G GACAG AG UCC CGAGUgu cg c
cgcgucuguga       c    CC A     C  C   G       c  u 


mirna_id: hsa-mir-335
hairpin:
-------u  -uu    c        A         C        U  gu 
        gu   ugag gggggUCA GAGCAAUAA GAAAAAUG uu  c
        ||   |||| |||||||| ||||||||| |||||||| ||   
        cg   acuc ccuCCAGU CUCGUUAUU CUUUUUgc aa  a
acuuauau  uuu    u        C         A        c  au 


mirna_id: mmu-mir-335
hairpin:
--------ucuuu    c        A         C        Uuu    u 
             uggg gggggUCA GAGCAAUAA GAAAAAUG   guuu u
             |||| |||||||| ||||||||| ||||||||   |||| c
             acuc cccCCAGU CUCGUUAUU CUUUUUgc   caaa g
accgauauugggu    u        C         A        ---    u 


mirna_id: cbr-lsy-6
hairpin:
-    a         ca   u       a    aaag 
 ccac gaaugcguc  gua caaaauc cauc    a
 |||| |||||||||  ||| ||||||| ||||    g
 gguG CUUACGCAG  UAU GUUUUag gugg    a
c    C         AG   -       -    caua 


mirna_id: cel-mir-392
hairpin:
uuuuugaaaauc       cgugu  a    G   U         G      gaaca 
            ucgcaga     uc gucA CAU CGUGGUUGA GAUAUc     c
            |||||||     || |||| ||| ||||||||| ||||||     a
            agcgucu     ag cAGU GUG GCACUAGCU CUAUag     a
-----gacaauc       --uuu  a    A   U         A      aaaaa 


mirna_id: mmu-mir-133a-2
hairpin:
a aa  ----ca     uuu    a       AA  U  A        -ag u 
 g  gc      aaugc   gcug aGCUGGU  AA GG ACCAAAUc   c g
 |  ||      |||||   |||| |||||||  || || ||||||||   | u
 c  cg      uuacg   cgau UCGACCA  UU CC UGGUUUag   g u
a gc  cacuag     cgu    G       AC  C  C        gua g 


mirna_id: mmu-mir-133b
hairpin:
c       --gg    --g   --       c        CA  C  A      U  g      
 cuccaaa    gagu   gcc  cccugcu ugGCUGGU  AA GG ACCAAG Cc ucuuc 
 |||||||    ||||   |||  ||||||| ||||||||  || || |||||| || |||| c
 gagguuu    cucg   cgg  gggacga AUCGACCA  UU CC UGGUUU gg agagu 
a       auaa    aaa   uc       c        AC  C  C      -  -      


mirna_id: hsa-mir-133b
hairpin:
c   a  a  --aa --a    --       c        ca  c  a      u  g      
 cuc ga ga    g   ugcc  cccugcu uggcuggu  aa gg accaag cc ucuuc 
 ||| || ||    |   ||||  ||||||| ||||||||  || || |||||| || |||| c
 gag uu cu    c   acgg  gggacga AUCGACCA  UU CC UGGUUU gg agagu 
a   g  c  gacc gua    uc       c        AC  C  C      -  -      


mirna_id: mmu-mir-181b-2
hairpin:
uuga     -   cucAA         CU           ---  a 
    uggcu gca     CAUUCAUUG  GUCGGUGGGUu   ug a
    ||||| |||     |||||||||  |||||||||||   || u
    accgg cgu     GUAAGUAAC  UAGUCACUCaa   ac g
aaaa     g   cAAAC         --           cca  u 


mirna_id: hsa-mir-325
hairpin:
----------a              CC   U    G C      GU Uu gug 
           uacagugcuugguu  UAG AGGU U CAGUAA  G  u   a
           ||||||||||||||  ||| |||| | ||||||  |  |    
           gugucacgaacuaa  auc ucca g guuauu  u  a   c
ggucucggauc              cu   c    g a      ug uu aua 


mirna_id: hsa-mir-345
hairpin:
---------acc       u      G U       A  C         ug u 
            caaaccc aggucu C GACUCCU GU CAGGGCUCg  a g
            ||||||| |||||| | ||||||| || |||||||||  |  
            guuuggg uccgGA G CUGGGGA CA GUCCCGggu  u g
cgacagcuauaa       -      G U       G  A         gg c 


mirna_id: hsa-mir-346
hairpin:
-g u      g ug    u    CU    -  AUG        U  guug 
  g cucugu u  ggcg cUGU  GCCC GC   CCUGCCUC cu    c
  | |||||| |  |||| ||||  |||| ||   |||||||| ||     
  c gagacg g  ccgu gacg  cggg cg   ggacggag ga    u
gg -      - gu    c    uc    u  --g        -  aguc 


mirna_id: rno-let-7a-2
hairpin:
cg   u c       cU   G   U             uagaguuac 
  gca g ucccagg  GAG UAG AGGUUGUAUAGUU         a
  ||| | |||||||  ||| ||| |||||||||||||         a
  cgu c aggguuC  UUC AUC UCCGACAUGUCaa         c
ca   u -       CU   G   C             uagagggaa 


mirna_id: rno-let-7b
hairpin:
g     U                     -  -----    ca   a 
 cgggg GAGGUAGUAGGUUGUGUGGUU uc     aggg  gug u
 ||||| ||||||||||||||||||||| ||     ||||  |||  
 guCCC UUCCGUCAUCCAACAUAUCaa ag     uccc  cgc g
a     -                     u  aagcc    --   u 


mirna_id: rno-let-7f-1
hairpin:
a    a UG                      ---------       u 
 ucag g  AGGUAGUAGAUUGUAUAGUUgu         gggguag g
 |||| |  ||||||||||||||||||||||         ||||||| a
 aguc C  UCCGUUAUCUAACAUAUCaaua         ucccauu u
g    - CU                      gaggauuug       u 


mirna_id: rno-mir-7a-2
hairpin:
-ggaca       c    c   A     A U     U       u uc 
      gaccagc cugu UGG AGACU G GAUUU GUUGUug g  u
      ||||||| |||| ||| ||||| | ||||| ||||||| |  g
      cugguug gguA ACC UCUGA C CUGAA CAACaac c  u
acuaca       u    C   G     C -     -       - ug 


mirna_id: rno-mir-7b
hairpin:
aggccagaacacau   -   aug     U  AAGAC         U      c  au 
              gag cca   cuaug GG     UUGUGAUUU GUUGUu ug  a
              ||| |||   ||||| ||     ||||||||| |||||| ||   
              cuc ggu   gauac cc     gacacugaa caacag au  u
----uuccacuacc   a   -ga     u  -gacc         -      u  ag 


mirna_id: rno-mir-9a-3
hairpin:
--    gcc       -  C               G     gu  ca 
  ggag   cguuucu cU UUUGGUUAUCUAGCU UAUGA  gc  c
  ||||   ||||||| || ||||||||||||||| |||||  ||   
  ucuc   guaaaga GA AAGCCAAUAGAUCGA AUAcu  cg  a
aa    --a       U  -               A     gc  ag 


mirna_id: rno-mir-10b
hairpin:
cca     guaa     u        a    G     C          -Ug  ac 
   aaguu    cguug cuauauau CCCU UAGAA CGAAUUUGUG   gu  c
   |||||    ||||| |||||||| |||| ||||| ||||||||||   ||   
   uucaa    guagc gguauauA GGGG AUCUU GCUUAGACAc   ua  c
-ac     aaac     u        A    -     A          uga  ca 


mirna_id: rno-mir-15b
hairpin:
u    --a       gua   U       C  C      UA   a  ac 
 ugga   ccuuaaa   cug AGCAGCA AU AUGGUU  CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||  ||| ||  g
 acuu   ggaauuu   gAU UCGUCGU UA UACUAA  gua ga  u
u    aaa       aaa   C       U  U      GC   -  ac 


mirna_id: rno-mir-16
hairpin:
caua     uc    cU         UA        C  ag   aau 
    cuugu  cgcu  AGCAGCACG  AAUAUUGG Gu  uga   a
    |||||  ||||  |||||||||  |||||||| ||  |||    
    ggaca  guga  UCGUCGUGU  UUAUAACC ca  auu   a
auag     gu    uU         UA        A  -a   aua 


mirna_id: rno-mir-17-1
hairpin:
     g         -        A  G     GUAGu    u 
gucag auaauguCA AAGUGCUU CA UGCAG     ggug g
||||| ||||||||| |||||||| || |||||     ||||  
caguc uguuacGGU UUCACGGA GU ACGUC     cuac u
     g         G        A  G     ---Au    g 


mirna_id: rno-mir-18a
hairpin:
u     -        u   --   U   UC   U    A   -  -a  u 
 gcgug cuuuuugu cUA  AGG GCA  UAG GCAG UAG ug  ag a
 ||||| |||||||| |||  ||| |||  ||| |||| ||| ||  ||  
 uguau gaagaaua ggU  UCC CGU  AUC CGUC Auc ac  uc g
c     u        c   CU   U   GA   C    -   u  ga  a 


mirna_id: rno-mir-19b-1
hairpin:
    ggu                 -  -      UC    uguau 
cacu   cuaugguuAGUUUUGCA GG UUUGCA  CAGc     a
||||   ||||||||||||||||| || ||||||  ||||     a
gugg   ggugucAGUCAAAACGU CC AAACGU  GUcg     u
    --u                 A  U      --    ucuua 


mirna_id: rno-mir-19b-2
hairpin:
      cuac                 --        GUU    -      g 
acauug    uuacgguuAGUUUUGCA  GAUUUGCA   CAGc guauau u
||||||    |||||||||||||||||  ||||||||   |||| ||||||  
uguagu    aguguuAGUCAAAACGU  CUAAACGU   GUcg uauaua g
      ----                 AC        ---    g      g 


mirna_id: rno-mir-19a
hairpin:
    c  u     C           --      ---    ag 
gcag cc cuguU GUUUUGCAUAG  UUGCAC   Uaca  a
|||| || ||||| |||||||||||  ||||||   ||||  a
cguc gg gguAG CAAAACGUAUC  AACGUG   augu  g
    c  u     U           UA      Uug    aa 


mirna_id: rno-mir-21
hairpin:
u      ccu      gU        A     A     A    u a 
 guacca   ugucgg  AGCUUAUC GACUG UGUUG cugu g a
 ||||||   ||||||  |||||||| ||||| ||||| |||| | u
 uauggu   acaguC  UCGGGUAG CUGAC ACAAC ggua c c
c      uuu      UG        -     G     -    - u 


mirna_id: rno-mir-22
hairpin:
a  --    u   cc               -     A      u  ccu 
 cc  uggc gag  gcaguAGUUCUUCAG UGGCA GCUUUA gu   g
 ||  |||| |||  ||||||||||||||| ||||| |||||| ||   a
 gg  accg cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
c  uc    u   -c               G     -      -  acc 


mirna_id: rno-mir-23a
hairpin:
c  c   c     -       G    G      a  c 
 gg cgg uGGGG UUCCUGG GAUG GAUUUg ug c
 || ||| ||||| ||||||| |||| |||||| || a
 cc guc aCCUU AGGGACC UUAC CUAaac ac g
c  a   a     U       G    A      -  u 


mirna_id: rno-mir-23b
hairpin:
cuca  -u c  -   c   u   --          -  C      gugacu 
    cc  g uc ugg ugc uGG  GUUCCUGGCA UG UGAUUU      u
    ||  | || ||| ||| |||  |||||||||| || ||||||       
    gg  c ag acc acg aCC  UAGGGACCGU AC ACUAaa      g
---c  uu c  u   a   c   AU          U  -      auuaga 


mirna_id: rno-mir-24-1
hairpin:
    g  G   A         UA     ucuca 
cucc GU CCU CUGAGCUGA  UCAGu     u
|||| || ||| |||||||||  |||||     u
gagG CA GGA GACUUGACU  GGUca     u
    A  A   C         -C     cacac 


mirna_id: rno-mir-24-2
hairpin:
-   -u    ---cu     ccgc       G   A         AA    ug  u 
 gcc  cucc     gggcu    cuccuGU CCU CUGAGCUGA  CAGU  au c
 |||  ||||     |||||    ||||||| ||| |||||||||  ||||  ||  
 cgg  gagg     cccga    gagGACA GGA GACUUGACU  GUca  ug c
a   uc    auacc     -ccu       A   C         CG    cg  a 


mirna_id: rno-mir-25
hairpin:
    a ug   ag    G      C G     U   --  ac 
ggcc g  uug  AGGC GAGACA G GCAAU GCu  gg  g
|||| |  |||  |||| |||||| | ||||| |||  ||  c
ccgg c  gac  UCUG CUCUGU C CGUUA Cgg  cc  u
    c gu   AG    G      U A     -   gu  cg 


mirna_id: rno-mir-26a
hairpin:
a     -   g      U         C          g gca g 
 aggcc gug ccuugU CAAGUAAUC AGGAUAGGCU u   g u
 ||||| ||| |||||| ||||||||| |||||||||| |   |  
 uccgg cgc ggggCA GUUCAUUGG UCUUAUCCgg g   c c
g     g   a      C         U          g -aa c 


mirna_id: rno-mir-26b
hairpin:
u  -    ga   -   U        UC         ug    g 
 gc ccgg  ccc agU CAAGUAAU  AGGAUAGGU  uggu c
 || ||||  ||| ||| ||||||||  |||||||||  ||||  
 cg ggcc  ggg UCG GUUCAUUA  UCUUGUCCg  accg u
c  u    gg   C   -        CC         --    g 


mirna_id: rno-mir-27b
hairpin:
-    -    aaca                  AUUG        ugau     
 accu cucu    aggugcAGAGCUUAGCUG    GUGAACAG    uggu 
 |||| ||||    ||||||||||||||||||    ||||||||    ||| u
 ugga gaga    uccaCGUCUUGAAUCGGU    CACUUguu    gccu 
g    a    --ag                  --GA        --uc     


mirna_id: rno-mir-27a
hairpin:
u  -  u u  a  A         UG  U       a  u  ac 
 gg cc g gg gc GGGCUUAGC  CU GUGAGCA gg cu  a
 || || | || || |||||||||  || ||||||| || ||  g
 cc gg c cc CG CUUGAAUCG  GA CACUUgu cu ga  c
c  a  u -  c  C         GU  -       g  -  aa 


mirna_id: rno-mir-28
hairpin:
   c   a   gcA                --UU   -u  cu 
ggu ccu ccc   AGGAGCUCACAGUCUA    GAG  uc  u
||| ||| |||   ||||||||||||||||    |||  ||  u
uca gga ggg   UCCUCGAGUGUUAGAU    cuc  ag  u
   c   c   AGG                CACc   uu  uc 


mirna_id: rno-mir-29b-1
hairpin:
-cu       -          U      GU      UUaaa 
   ucaggaa gcuggUUUCA AUGGUG  UUAGAU     u
   ||||||| |||||||||| ||||||  ||||||     a
   gguucUU UGACUAAAGU UACCAC  GAUcug     g
ggu       G          U      --      uuagu 


mirna_id: rno-mir-30b
hairpin:
-     uuu     c            U   -        --   u 
 ccgag   caguu aUGUAAACAUCC ACA CUCAGCUg  uca a
 |||||   ||||| |||||||||||| ||| ||||||||  |||  
 gguuc   gucga UGCAUUUGUAGG UGU GGGUCggu  agu c
a     --u     C            -   A        ug   a 


mirna_id: rno-mir-30a
hairpin:
   a            UC           -----   a 
gca cUGUAAACAUCC  GACUGGAAGcu     gug a
||| ||||||||||||  |||||||||||     |||  
cgu GACGUUUGUAGG  CUGACUUUCgg     cac g
   C            --           guaaa   c 


mirna_id: rno-mir-30c-2
hairpin:
   u a    uacU       U   ACA         gugaaa 
gag g caga    GUAAACA CCU   CUCUCAGCu      a
||| | ||||    ||||||| |||   |||||||||       
uuc c gucu    CAUUUGU GGA   GAGGGUCga      g
   - -    cUCU       C   --A         aagaau 


mirna_id: rno-mir-31a
hairpin:
u   c   aaac ug  acu      gA     G   C         -U   gaa 
 gcu cug    u  ga   ggagag  GGCAA AUG UGGCAUAGC  Guu   c
 ||| |||    |  ||   ||||||  ||||| ||| |||||||||  |||    
 cga gac    a  cu   ccuuuC  CCGUU UAC ACCGUAUCG  caa   u
u   c   ---- gu  -gu      UA     A   A         Uc   gag 


mirna_id: rno-mir-32
hairpin:
        UG     U            - uu  c 
ggggaUAU  CACAU ACUAAGUUGCAu g  gu a
||||||||  ||||| |||||||||||| |  ||  
cucUUAUA  GUGUG UGAUUUAACGua c  cg c
        GU     -            a uc  g 


mirna_id: rno-mir-33
hairpin:
              A UU         guucu  c 
ccgugGUGCAUUGU G  GCAUUGCAu     gg a
|||||||||||||| |  |||||||||     || g
ggcACUACGUGACA C  UGUAACgug     cc u
              C UU         ----u  a 


mirna_id: rno-mir-34a
hairpin:
c    u   -    a    uU        -   A          --gug   a 
 cggc gug agua uucu  GGCAGUGU CUU GCUGGUUGUu     agu u
 |||| ||| |||| ||||  |||||||| ||| ||||||||||     |||  
 guug cac ucgu aagA  CCGUCAUA GAA CGACUAAcga     ucg u
u    -   g    g    UC        U   -          aggaa   a 


mirna_id: rno-mir-92a-1
hairpin:
---cu   uac            UU  C           uu 
     uuc   acAGGUUGGGAU  GU GCAAUGCUgug  u
     |||   ||||||||||||  || |||||||||||   
     gag   uGUCCGGCCCUG  CA CGUUAUgauau  c
gguuu   --u            UU  -           gu 


mirna_id: rno-mir-92a-2
hairpin:
u    ---a   a   a     G     U     CAU     guguu 
 gccc    uuc ucc cAGGU GGGAU AGUGC   UACuu     a
 ||||    ||| ||| ||||| ||||| |||||   |||||      
 uggg    aag agg GUCCG CCCUG UCACG   AUgaa     g
u    agaa   a   a     G     U     -UU     aaaua 


mirna_id: rno-mir-93
hairpin:
a   a         -CA       -     U    G   ug  u 
 guc ugggggcuc   AAGUGCU GUUCG GCAG UAG  ca u
 ||| |||||||||   ||||||| ||||| |||| |||  || g
 cag acccccgAG   UUCACGA CGAGU CGUC Auc  gu c
a   g         CCC       U     -    -   ca  c 


mirna_id: rno-mir-96
hairpin:
c     cca       gg  g  U        A      UU      ---   uc 
 cagua   ucugcuu  cc au UUGGCACU GCACAU  UUGCUu   gug  u
 |||||   |||||||  || || |||||||| ||||||  ||||||   |||   
 gucgu   gggcgaa  gg UA AACCGUGA CGUGUA  AACgag   cgc  c
c     --c       aa  g  U        -      CU      ucu   cu 


mirna_id: rno-mir-98
hairpin:
c   -      ug   U                 U    ---------      aggg 
 ugc acaugc  ggg GAGGUAGUAAGUUGUAU GUUg         uggggu    a
 ||| ||||||  ||| ||||||||||||||||| ||||         ||||||    u
 acg ugugug  cCC UUUCAUCAUUCAACAUA Caau         accccg    u
u   g      gu   -                 U    agaagaaua      gauu 


mirna_id: rno-mir-99a
hairpin:
cc     g    A         UC   U      g  aag 
  cauug caua ACCCGUAGA  CGA CUUGUG ug   u
  ||||| |||| |||||||||  ||| |||||| ||    
  gugac guGU UGGGUAUCU  GCU GAACac gc   g
gu     g    C         UU   C      -  cag 


mirna_id: rno-mir-100
hairpin:
    -uu c    A   CG    UC   A      c  ac 
ccug   g caca ACC  UAGA  CGA CUUGUG ug  c
||||   | |||| |||  ||||  ||| |||||| ||   
ggau   c gugu UGG  AUCU  GUU GAACac ac  a
    ugu u    a   AU    GU   C      -  gu 


mirna_id: rno-mir-101a
hairpin:
u   cuggc                  A    gucca 
 gcc     UCAGUUAUCACAGUGCUG UGCu     u
 |||     |||||||||||||||||| ||||      
 cgg     AGUCAAUAGUGUCAUGAC AUgg     u
a   uaggA                  -    aaauc 


mirna_id: rno-mir-103-2
hairpin:
g    c  g      --   U  U           ----    ua 
 ucuu gu cuuucA  GCU CU UACAGUGCUgc    cuug  g
 |||| || ||||||  ||| || |||||||||||    ||||  c
 agaa ca gaaAGU  CGG GA AUGUUACGACG    ggac  a
a    c  a      AU   -  C           Aacu    uu 


mirna_id: rno-mir-103-1
hairpin:
u     c    c  --    U  U           C   U g a 
 ucuua ugcc uc  GGCU CU UACAGUGCUGC UUG u c u
 ||||| |||| ||  |||| || ||||||||||| ||| | |  
 agagu acgg AG  UCGG GA AUGUUACGACG Aac a g a
c     u    a  UA    -  C           -   u g u 


mirna_id: rno-mir-107
hairpin:
-      c      --a    U  U           C   U   a 
 uucucu ugcuuu   AGCU CU UACAGUGUUGC UUG ggc u
 |||||| ||||||   |||| || ||||||||||| ||| ||| g
 gagaga acgaaA   UCGG GA AUGUUACGACG Aac uug g
c      c      CUA    -  C           -   -   a 


mirna_id: rno-mir-122
hairpin:
c        -    c GG       CA          -   c 
 cuuagcag agcu U  AGUGUGA  AUGGUGUUUG ugu c
 |||||||| |||| |  |||||||  |||||||||| ||| a
 ggaucguc ucga a  UCACACU  UACCGCAAac aca a
c        a    c AA       AC          u   a 


mirna_id: rno-mir-125a
hairpin:
u     c u ug  UC  UG   C    UA        ----  a 
 gccgg c c  gg  CC  AGA CCUU  ACCUGUGA    gg c
 ||||| | |  ||  ||  ||| ||||  ||||||||    ||  
 cgguc g g  CC  GG  UCU GGAG  UGGACAcu    cc g
-     c c gu  GA  GU   U    --        ggga  u 


mirna_id: rno-mir-125b-1
hairpin:
u    uc c u   UC  UG   C           Au     c 
 gcgc  c c cag  CC  AGA CCUAACUUGUG  guuua c
 ||||  | | |||  ||  ||| |||||||||||  ||||| g
 cgug  g g gUC  GG  UCU GGAUUGGGCAc  uaaau u
-    cu a c   GA  GU   C           -c     u 


mirna_id: rno-mir-125b-2
hairpin:
accaga   uu     UC  UG   C   A        -gg   u 
      cuu  ccuag  CC  AGA CCU ACUUGUGA   uau u
      |||  |||||  ||  ||| ||| ||||||||   |||  
      gag  ggaUC  GG  UCU GGA UGAACAcu   aug u
---gga   gc     CA  GU   C   C        aca   a 


mirna_id: rno-mir-126a
hairpin:
u   a  a           U       C cug   c 
 gac gc CAUUAUUACUU UGGUACG G   uga a
 ||| || ||||||||||| ||||||| |   |||  
 cug uG GUAAUAAUGAG GCCAUGC c   acu c
a   g  C           U       U -aa   u 


mirna_id: rno-mir-127
hairpin:
-----uuu   ca   ucu      ugCUG         G  C      --  a 
        gau  cug   ccagcc     AAGCUCAGA GG UCUGAU  Uc g
        |||  |||   ||||||     ||||||||| || ||||||  || a
        cug  ggc   ggUCGG     UUCGAGUCU CC AGGCUa  ag a
cuacuacu   aa   --u      -----         G  U      cu  a 


mirna_id: rno-mir-128-1
hairpin:
u    u      uuC       UAG      CU       u 
 gagc guugga   GGGGCCG   CACUGU  GAgaggu u
 |||| ||||||   |||||||   ||||||  |||||||  
 uucg cgacuu   CUCUGGC   GUGACA  CUcuuua a
c    u      UUU       CAA      --       c 


mirna_id: rno-mir-128-2
hairpin:
u ug       a          AUG      AA    g gag 
 g  caguggg agGGGGGCCG   CACUGU  GAga u   u
 |  ||||||| ||||||||||   ||||||  |||| |    
 u  gucaucc UUUCUCUGGC   GUGACA  CUcu g   a
c gu       c          CAA      --    g acg 


mirna_id: rno-mir-129-1
hairpin:
u    -       C   CU      G   uu  -  c 
 gggu CUUUUUG GGU  GGGCUU Cug  cu cu c
 |||| ||||||| |||  |||||| |||  || ||  
 ucua GAAAAAC CCA  CCCGAA gac  ga ga a
-    u       C   UU      g   -u  u  c 


mirna_id: rno-mir-130a
hairpin:
u     -u     ga        C      UG  A  guc   a 
 gcugc  ggccg  GCUCUUUU ACAUUG  CU CU   uac c
 |||||  |||||  |||||||| ||||||  || ||   |||  
 ugaug  ccggc  CGGGAAAA UGUAAC  GA ga   aug g
-     uu     UA        U      GU  C  gcc   u 


mirna_id: rno-mir-130b
hairpin:
      c    cA       CC         A  guggg  u 
ggcuug ugga  CUCUUUC  UGUUGCACU CU     cc c
|||||| ||||  |||||||  ||||||||| ||     ||  
ccggac gccU  GGGAAAG  GUAACGUGA ga     gg u
      u    AC       UA         C  ----a  g 


mirna_id: rno-mir-132
hairpin:
cc  cccc    -  c a    a         UUC          -g     
  gc    gcgu cu c gggc ACCGUGGCU   GAUUGUUACU  uggg 
  ||    |||| || | |||| |||||||||   ||||||||||  ||| a
  cg    cgca ga g cccG UGGUACCGA   CUGACAAUgg  gcca 
cu  cacc    c  c c    C         CAU          ag     


mirna_id: rno-mir-133a
hairpin:
-      uuu    a       AA  U  A        gccuc 
 caaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgau UCGACCA  UU CC UGGUUUag     u
a      uau    G       AC  C  C        guaac 


mirna_id: rno-mir-134
hairpin:
c     gU        U  -A   G    Gcgu  a 
 agggu  GUGACUGG UG  CCA AGGG    gc c
 |||||  |||||||| ||  ||| ||||    || u
 ucccA  CACUGAUC AC  GGU UCcc    ug u
c     AC        C  CG   G    -acu  u 


mirna_id: rno-mir-135a
hairpin:
a  uaaa     ucua   c            U            -u gua 
 ga    uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA  c   a
 ||    |||||    ||| |||||||||||| ||||||||||||  |    
 cu    aagug    cau AAGUACCGAAGG UAGGGAUGUacu  g   u
a  -uaa     -uua   A            -            cu aaa 


mirna_id: rno-mir-136
hairpin:
u        g        C     UUU          uuc 
 gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
 |||||||| |||||||| |||||   ||||||||||   u
 cuugggag cuUCUGAG UAAAC   GCUACUACcu   a
u        a        -     UCU          cga 


mirna_id: rno-mir-137
hairpin:
g   -  cug           ug   G           UG A     -  g 
 gcc cu   acucucuucgg  ACG GUAUUCUUGGG  G UAAua cg a
 ||| ||   |||||||||||  ||| |||||||||||  | ||||| || u
 cgg ga   ugagaggagcu  UGC CAUAAGAAUUC  U AUUgu gc u
a   c  cca           GA   G           GU -     u  a 


mirna_id: rno-mir-138-2
hairpin:
gu   u  AG             UCA     ---ac   caa 
  ugc gc  CUGGUGUUGUGAA   GGCCG     gag   c
  ||| ||  |||||||||||||   |||||     |||   g
  acg UG  GACCACAGCACUU   UCGgc     cuc   c
cc   u  -G             -UA     ccauu   cua 


mirna_id: rno-mir-138-1
hairpin:
cu   g  ug    u       AG             UCA       gc a 
  cug ca  gugu gugggac  CUGGUGUUGUGAA   GGCCGuu  c a
  ||| ||  |||| |||||||  |||||||||||||   |||||||  | u
  gac gu  cacg cacucuG  GACCACAACACUU   UCGGCaa  g c
-g   -  --    u       -G             -CA       ga a 


mirna_id: rno-mir-141
hairpin:
-         u a U       --    U          au    gaa 
 ggcugacuc g g CCAUCUU  CCAG GCAGUGUUGg  gguu   g
 ||||||||| | | |||||||  |||| ||||||||||  ||||   u
 uugacuggg c c GGUAGAA  GGUC UGUCACAAUc  ucga   a
c         c c c       AU    -          -c    agc 


mirna_id: rno-mir-143
hairpin:
---        c  g      ag      G         G      U  -  ag 
   gcggagcg cu ucuccc  ccugaG UGCAGUGCU CAUCUC GG uc  u
   |||||||| || ||||||  |||||| ||||||||| |||||| || ||   
   cgucuugu ga agaggg  ggACUC AUGUCACGA GUAGAG cu ag  u
cga        a  -      aa      G         A      U  g  gg 


mirna_id: rno-mir-144
hairpin:
-   --   u      G        A         -A    gu 
 ggg  ccu ggcugG AUAUCAUC UAUACUGUA  GUuu  g
 |||  ||| |||||| |||||||| |||||||||  ||||   
 ccc  ggg cugaUC UGUAGUAG AUAUGACAU  caga  a
c   au   u      A        -         ca    gu 


mirna_id: rno-mir-145
hairpin:
ca  u  u     c  UC    U  C            uggau 
  cc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
  || || ||||| ||  |||| || ||||||||||||     c
  gg ac ggagu uC  GUCA AA GGUCCUUAGGgg     u
uc  u  u     -  UU    U  A            uagaa 


mirna_id: rno-mir-146a
hairpin:
---------ugug     u     cU            C        --   g 
             uaucc cagcu  GAGAACUGAAUU CAUGGGUU  aua c
             ||||| |||||  |||||||||||| ||||||||  |||  
             auagg gucga  UUCUUGACUUGA GUGUCCAg  ugu a
uacugcuaucucg     -     -U            A        ac   a 


mirna_id: rno-mir-150
hairpin:
c        g            AC   U       U -   u 
 uucucaag cccugUCUCCCA  CCU GUACCAG G cug g
 |||||||| ||||||||||||  ||| ||||||| | ||| c
 agggguuc gggacAGGGGGU  GGA CAUGGUC c gac c
c        a            CC   -       c a   u 


mirna_id: rno-mir-152
hairpin:
ugu   --                 G  A    CC    cgg   c 
   ucc  ccgggcccAGGUUCUGU AU CACU  GACU   gcu u
   |||  ||||||||||||||||| || ||||  ||||   |||  
   agg  ggcccgGGUUCAAGACA UA GUGA  CUga   cga g
--c   au                 G  C    --    ---   g 


mirna_id: rno-mir-153
hairpin:
a     gg      -             GU       -a  aa 
 gcggu  ccaguG UCAUUUUUGUGAU  UGCAGCU  gu  u
 |||||  |||||| |||||||||||||  |||||||  ||  a
 uguca  gguuaC AGUGAAAACACUG  ACGUUga  cg  u
g     aa      U             AU       cc  ag 


mirna_id: rno-mir-154
hairpin:
gc      u            U      UGCC    - uuu 
  ggugcu gaagaUAGGUUA CCGUGU    UUCG c   a
  |||||| |||||||||||| ||||||    |||| |   u
  ccauga uuuUUAUCCAGU GGCACA    AAgc g   u
aa      c            U      UACU    a ugc 


mirna_id: rno-mir-181c
hairpin:
---agaacuug   a  g       gAA        CU       A     ggca 
           cca gg uuugggg   CAUUCAAC  GUCGGUG GUuug    g
           ||| || |||||||   ||||||||  ||||||| |||||    c
           ggu cc gagccCC   GUGAGUUG  CAGCUAC CAaac    u
cccaccgucaa   -  g       -AG        -C       -     agac 


mirna_id: rno-mir-181a-2
hairpin:
agaugggcaaccaaggcagccuuaa     cu   u  A   U      CU  C    A    gggauuca 
                         gagga  cca gg ACA UCAACG  GU GGUG GUuu        a
                         |||||  ||| || ||| ||||||  || |||| ||||         
                         uucuu  ggu cc UGU AGUUGC  CA CCAC CAaa        a
------------------------a     ag   u  a   C      --  A    -    aaaaacaa 


mirna_id: rno-mir-181b-1
hairpin:
ccugugcagagaugauguuuacaaa       aucAA         CUG          gaa  g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUu   cu u
                         |||||||     |||||||||   ||||||||||   ||  
                         ccggugu     GUAAGUAAC   AGUCACUCga   ga g
-------------------uucgcc       -cAAC         --A          aaa  u 


mirna_id: rno-mir-181b-2
hairpin:
-uga     -   cucAA         CUG          ---  a 
    uggcu gca     CAUUCAUUG   UCGGUGGGUu   ug a
    ||||| |||     |||||||||   ||||||||||   || u
    accgg cgu     GUAAGUAAC   GGUCACUCaa   ac g
aaaa     g   cAAAC         --U          cca  u 


mirna_id: rno-mir-183
hairpin:
cca a ag g  a   c  uc    g      --AC     GA        --   ac 
   g g  u ug cuc ug  cugu UAUGGC    UGGUA  AUUCACUg  uga  a
   | |  | || ||| ||  |||| ||||||    |||||  ||||||||  |||   
   c c  a ac gag ac  gaca AUACCG    GCCAU  UAAGUgac  gcu  g
-ag g cu g  a   -  ga    A      GGAA     --        ug   cu 


mirna_id: rno-mir-184
hairpin:
----     u                ag     -    ug 
    cacuu cccuuaucaguuuucc  ccagc uuug  a
    ||||| ||||||||||||||||  ||||| ||||   
    gugaa GGGAAUAGUCAAGAGG  GGUug aaau  c
guca     U                CA     u    gu 


mirna_id: rno-mir-185
hairpin:
-     u       UG   A     G         Au  uc 
 ggggg gagggau  GAG GAAAG CAGUUCCUG  gg  c
 ||||| |||||||  ||| ||||| |||||||||  ||   
 cccUC CUUCCUG  CUC CUUUc gucggggac  cc  c
a     U       GU   -     g         --  uc 


mirna_id: rno-mir-186
hairpin:
u     c                 U     U      ucucau 
 gcuua aacuuucCAAAGAAUUC CCUUU GGGCUu      u
 ||||| ||||||||||||||||| ||||| ||||||       
 cgagu uugaagGGUUUUUUAAG GGAAA CCCGaa      u
u     -                 U     -      uuuuau 


mirna_id: rno-mir-187
hairpin:
gg  ucaca    acaa    ga     A    A           C  -  c - ug 
  gc     ggac    ugcg  uccuc GGCU CAACACAGGAC cg gg g c  c
  ||     ||||    ||||  ||||| |||| ||||||||||| || || | |   
  cg     ucug    acgc  gggaG CCGA GUUGUGUUCUG GC cc c g  u
-a  -----    ---g    -a     G    C           U  U  c a uc 


mirna_id: rno-mir-190a
hairpin:
u     c u    - UG               UA     uuau 
 gcagg c cugu g  AUAUGUUUGAUAUAU  GGUug    u
 ||||| | |||| |  |||||||||||||||  |||||     
 cguuc g gaca C  UAUACGAACUAUAUA  UCAac    u
c     u u    U CU               --     cuaa 


mirna_id: rno-mir-191a
hairpin:
-   u   c      C          C  AA       uu  -  c 
 ggc gga agcggg AACGGAAUCC AA  GCAGCUG  gu cu c
 ||| ||| |||||| |||||||||| ||  |||||||  || ||  
 ccg ccu ucguCC UUGCUUUAGG UU  CGUCGac  ua ga a
u   u   c      C          -  CA       cu  c  g 


mirna_id: rno-mir-192
hairpin:
-gucaaga  ga   c   g g  C         -     A       uacuc  a 
        ug  gug aca g cu UGACCUAUG AAUUG CAGCCag     ug u
        ||  ||| ||| | || ||||||||| ||||| |||||||     ||  
        ac  cgc ugu u GA ACUGGAUAC UUGAC GUCgguc     gc c
cgaccgua  uc   u   a g  C         C     C       --ucc  u 


mirna_id: rno-mir-193
hairpin:
gcggac          ag     U     CG   A  A    ggu 
      gggagcugag  cUGGG CUUUG  GGC AG UGAg   g
      ||||||||||  ||||| |||||  ||| || ||||    
      cccucggcuc  GACCC GAAAC  CCG UC Acuu   u
------          cU     U     AU   G  A    gac 


mirna_id: rno-mir-194-1
hairpin:
a     -      cgU         A      GU   -   u 
 uggag ucauca   GUAACAGCA CUCCAU  GGA cug g
 ||||| ||||||   ||||||||| ||||||  ||| |||  
 accuc gguagu   cauugucgu gaggug  ccu gac c
-     c      uuu         c      ac   a   a 


mirna_id: rno-mir-194-2
hairpin:
-u   uc       cU         A      G    ---   g 
  ggc  ccacccc  GUAACAGCA CUCCAU UGGA   agu c
  |||  |||||||  ||||||||| |||||| ||||   |||  
  ucg  ggugggg  UAUUGUCGU GGGGUG ACCu   uca c
gg   ga       UC         C      -    uag   c 


mirna_id: rno-mir-195
hairpin:
a   cu    g  cU          -A          c  g a 
 acu  ccug cu  AGCAGCACAG  AAUAUUGGCa gg u a
 |||  |||| ||  ||||||||||  |||||||||| || | g
 ugg  ggac gA  UCGUCGUGUC  UUAUAACCgu cu a u
g   ug    g  CC          GG          -  g g 


mirna_id: rno-mir-196a
hairpin:
-------uguuugcuca     uc                  A          a ug   
                 gcuga  uguggcuUAGGUAGUUUC UGUUGUUGGG u  ag 
                 |||||  |||||||||||||||||| |||||||||| |  | u
                 ugacu  acauugAGUCCGUCAAAG ACAACGGCUc a  uu 
cgggagcugcuuuuggc     --                  A          a gu   


mirna_id: rno-mir-199a
hairpin:
uggaagcuu    aga    -    c   gcC       U        C   --UCa  ac 
         cugg   uccu gcuc guc   CCAGUGU CAGACUAC UGU     gg  a
         ||||   |||| |||| |||   ||||||| |||||||| |||     ||   
         gacc   ggga cggg cag   GGUUACA GUCUGAUG ACA     cc  a
-------ac    ---    a    u   AUU       C        -   uguug  gu 


mirna_id: rno-mir-200c
hairpin:
  cu    -      A        U   u   gg 
cc  CGUC UUACCC GCAGUGUU Ggg gcu  u
||  |||| |||||| |||||||| ||| |||  u
gg  GUAG AAUGGG CGUCAUAA cuc uga  g
  ag    U      C        U   -   gg 


mirna_id: rno-mir-200a
hairpin:
cu   - c   g        -             C    uu  uu 
  ggg c ucu ugggCAUC UUACCGGACAGUG UGGa  uc  g
  ||| | ||| |||||||| ||||||||||||| ||||  ||  g
  ccc g gga acuUGUAG AAUGGUCUGUCAC AUcu  ag  c
-a   a u   a        C             A    -c  uu 


mirna_id: rno-mir-200b
hairpin:
ccaacuu    ag    g c    -    UG     C      u gug 
       gggc  ccgu g CAUC UUAC  GGCAG AUUGGA a   u
       ||||  |||| | |||| ||||  ||||| |||||| |    
       cccg  ggcg C GUAG AAUG  CCGUC UAAUcu u   c
-gcacgu    -a    g A    U    GU     A      c agu 


mirna_id: rno-mir-203a
hairpin:
-------------       u    c         U    G    A     - ug 
             gcgcgcc gguc AGUGGUUCU AACA UUCA Caguu c  u
             ||||||| |||| ||||||||| |||| |||| ||||| |   
             cgcgcgg ccaG UCACCAGGA UUGU AAGU Guuaa g  a
agcggcgacggca       c    A         U    A    -     c cg 


mirna_id: rno-mir-204
hairpin:
ggcuacagcccuucu   -  -    ucg     U          A     U    gagaau 
               uca ug ugac   uggac UCCCUUUGUC UCCUA GCCU      a
               ||| || ||||   ||||| |||||||||| ||||| ||||      u
               ggu ac acug   acUUG AGGGAAACGG AGGGU CGga      a
--------------c   c  u    uua     C          A     -    ggaagu 


mirna_id: rno-mir-205
hairpin:
aaa    cccagacaa      ggu       UC           C        Ucuua 
   cagc         uccaug   ccuccug  CUUCAUUCCAC GGAGUCUG     u
   ||||         ||||||   |||||||  ||||||||||| ||||||||      
   gucg         agguac   ggaggac  gaagugaggug cuuuagac     g
acc    ---------      ---       uc           a        caacc 


mirna_id: rno-mir-206
hairpin:
--   c  c                     C U     auau 
  cuu cc aggccACAUGCUUCUUUAUAU C CAUag    c
  ||| || ||||||||||||||||||||| | |||||    a
  gaa gg uuuGGUGUGUGAAGGAAUGUA G GUauc    c
gu   c  u                     A -     gcgu 


mirna_id: rno-mir-208a
hairpin:
u         g  uG       G  C  GG      c  a 
 uccuuugac gg  AGCUUUU GC CG  UUAUAC ug c
 ||||||||| ||  ||||||| || ||  |||||| || u
 aggagacug uu  uCGAAAA CG GC  AAUAug ac c
g         g  gu       A  A  AG      c  u 


mirna_id: rno-mir-210
hairpin:
cc  gg -a  cc u     cu    a     A   CC    -     C  c   gc 
  gg  c  gu  c ccagg  cagg cAGCC CUG  CACA GCACA UG guu  u
  ||  |  ||  | |||||  |||| ||||| |||  |||| ||||| || |||   
  cc  g  cg  g ggucc  gucu GUCGG GAC  GUGU CGUGU ac cag  c
--  aa cg  ac -     cu    A     C   -A    G     C  c   gc 


mirna_id: rno-mir-211
hairpin:
-ca  -u    ccu      u                CA     U    ag  cu 
   gc  ugga   gugacc cugggcUUCCCUUUGU  UCCUU GCCU  gc  c
   ||  ||||   |||||| ||||||||||||||||  ||||| ||||  ||   
   cg  aucu   cacugg gacucgGGGGGAAACG  AGGAA CGGg  ug  u
aga  uc    --c      u                AC     -    -g  ag 


mirna_id: rno-mir-212
hairpin:
cgggauauccccgccc    -  c   c   -cA  U     CU      C      ccc     
                gggc ag gcg cgg   CC UGGCU  AGACUG UUACUG   gggc 
                |||| || ||| |||   || |||||  |||||| ||||||   ||| c
                cccg uc cgc gcc   GG ACUGA  UCUGAC AAUgac   cccg 
------------ccgc    g  -   a   ACC  C     CC      -      --u     


mirna_id: rno-mir-181a-1
hairpin:
-----------a    -   uc  u A   U      CU       A    ggaau 
            gguu gcu  ag g ACA UCAACG  GUCGGUG GUuu     u
            |||| |||  || | ||| ||||||  ||||||| ||||     c
            ccaa cga  uc C UGU AGUUGC  CAGCUAC CAaa     a
ccucaucuauua    u   ua  C A   U      --       -    aauaa 


mirna_id: rno-mir-214
hairpin:
guccuggauggacA A           U          aca            aacau 
              G GUUGUCAUGUG CUgccugucu   cuugcugugcag     c
              | ||||||||||| ||||||||||   ||||||||||||     c
              c caacaguacac GACGGACAGA   GGACGACAuguc     g
---------uccga c           u          CAC            cacuc 


mirna_id: rno-mir-216a
hairpin:
-----------guua   a  ag     u         CU   A        --   uc 
               gcu ug  uuagu UAAUCUCAG  GGC ACUGUGAg  aug  c
               ||| ||  ||||| |||||||||  ||| ||||||||  |||  c
               cga ac  aaucG AUUAGGGUC  CUG UGACACuc  uac  u
cuccaguuccuuuaa   g  -a     U         -U   G        cu   ua 


mirna_id: rno-mir-217
hairpin:
accacagucauugua    u     c c  a  C     C         C   auaa     
               guuu gaugu g ag UA UGCAU AGGAACUGA UGG    gacu 
               |||| ||||| | || || ||||| ||||||||| |||    ||| c
               caaa cuacg c UC GU ACGUA UCCUUGACU Acc    cuga 
--------------a    u     a u  C  U     A         -   ---a     


mirna_id: rno-mir-218a-1
hairpin:
-   au  c  a   a   u      U         CU        gc    gag 
 gug  aa gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 |||  || || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 cau  uu cg cgc cug aaggua CACGAACUG  UUGGUACA  Aaug   a
a   cu  -  a   a   c      c         CC        -A    agu 


mirna_id: rno-mir-219-1
hairpin:
---------cuguccc    c       cU   U     A            a   ucu 
                gggc gcggcuc  GAU GUCCA ACGCAAUUCUcg guc   g
                |||| |||||||  ||| ||||| |||||||||||| |||   g
                cccg cgccgaG  CUG CAGGU UGCGUUGAGAgc cgg   c
gggggagcuccaaacc    c       CC   -     C            -   ccu 


mirna_id: rno-mir-219-2
hairpin:
acuca       c     U   U     AA           uac a  c 
     ggggcuu accac GAU GUCCA  CGCAAUUCUug   g gu u
     ||||||| ||||| ||| |||||  |||||||||||   | || g
     ccucgag uggUG CUA CAGGU  GUGUUAAGAgc   c cg c
---gg       u     U   -     CG           caa -  g 


mirna_id: rno-mir-221
hairpin:
----ugaaua       cugg   a    -  UG   U         AUUU    -   u 
          uccaggu    ggc ugaA CC  GCA ACAAUGUAG    Cugu guu g
          |||||||    ||| |||| ||  ||| |||||||||    |||| ||| u
          aggucca    ucg aCUU GG  CGU UGUUACAUC    GAca cgg u
cucuuuacga       ----   g    U  GU   C         ----    a   a 


mirna_id: rno-mir-222
hairpin:
--aa    uag      c    u              -     AUc   ucuu 
    ggau   ggugcc ucag GGCUCAGUAGCCAG UGUAG   cug    u
    ||||   |||||| |||| |||||||||||||| |||||   |||    g
    ucua   cuacgg aguc cUGGGUCAUCGGUC ACAUC   gac    g
ucga    ---      u    u              U     GAc   uaau 


mirna_id: rno-mir-223
hairpin:
u    ccuucu   -gu        cC U              GAGUUG         u 
 cugg      gca   guuacgcu  G GUAUUUGACAAGCU      gacacucug g
 ||||      |||   ||||||||  | ||||||||||||||      ||||||||| u
 gacu      cgu   cgguguga  C CAUAAACUGUUUGA      CUGUgagau g
-    ---auu   acu        aC C              ------         g 


mirna_id: rno-mir-290
hairpin:
-   u  u  -      C     A   G          uuu 
 uca cu gc gguUCU AAACU UGG GGCAcuuuuu   u
 ||| || || |||||| ||||| ||| ||||||||||    
 agu gg cg ccggga uuugg acc ccgugaaaaa   c
g   u  c  u      u     -   g          uuu 


mirna_id: rno-mir-291a
hairpin:
  g       a  -  U            C  C   ug   c 
cc guguagu gc CA CAAAGUGGAGGC CU UCU  ggc c
|| ||||||| || || |||||||||||| || |||  |||  
gg uacguca CG GU GUUUCACCUUCG GA Aga  ucg g
  g       C  U  -            U  A   --   a 


mirna_id: rno-mir-292
hairpin:
   c u           --A    G   U    UGgg     u 
caa c gugauACUCAA   CUGG GGC CUUU    uuuuc u
||| | |||||||||||   |||| ||| ||||    |||||  
guu g cauUGUGAGUU   GACC CCG GAAa    agaag u
   a c           UUG    G   U    ----     g 


mirna_id: rno-mir-296
hairpin:
g   -     u        C  C         G   -u c 
 gac cuuuc ggAGGGCC CC CUCAAUCCU Uug  g u
 ||| ||||| |||||||| || ||||||||| |||  |  
 cug ggaag CCUCUCGG GG GGGUUGGGA Gac  c c
-   u     u        A  U         -   uu g 


mirna_id: rno-mir-297
hairpin:
-     UG    U      G            c 
 augcA  UAUG GUGCAU UAUGCAUGcaug a
 |||||  |||| |||||| ||||||||||||  
 ugugu  gugu cacgug guauguauguau u
g     gu    u      -            g 


mirna_id: rno-mir-298
hairpin:
   gg   uc       -       -         uug    u 
cca  ccu  GGCAGAG GAGGGCU GUUCUUCCC   gguu u
|||  |||  ||||||| ||||||| |||||||||   ||||  
ggu  gga  UCGUCUC CUUCCGA CAAGGAggg   ucag a
   ga   -u       U       U         ---    u 


mirna_id: rno-mir-299a
hairpin:
     a                      uu 
aagaa UGGUUUACCGUCCCACAUACAU  u
||||| ||||||||||||||||||||||  g
uucuU GCCAAAUGGCAGGGUGUAUgua  a
     C                      ug 


mirna_id: rno-mir-320
hairpin:
gc    c      ---c         UU       C      g 
  cucg uguccu    cGCCUUCUC  CCCGGUU UUCCcg a
  |||| ||||||    |||||||||  ||||||| ||||||  
  gggu auagga    GCGGGAGAG  GGGUCGA AAgggc g
--    -      aaaA         UU       A      u 


mirna_id: mmu-mir-215
hairpin:
agcucuc    ucaac  ug       gaA  A     -  UU        c     g 
       agca     gg  uacagga   UG CCUAU GA  UGACAGAC gugca c
       ||||     ||  |||||||   || ||||| ||  |||||||| |||||  
       ucgu     cu  augucuu   AC GGAUG CU  ACUGUCUg uaugu u
aaauuca    ---ca  gu       aUA  C     U  -U        -     g 


mirna_id: ath-MIR167d
hairpin:
u      -u     aa           C  C           auc    ca  -c            u    aaacuucuuuauaauuuaugcacacacauacagcucuuaauggccacaacucaaaguuauaauuagugcaugaucucuaguuauuugacugcuuuuaauauauguuuauggauucacg 
 guuggu  uuuag  gcUGAAGCUGC AG AUGAUCUGGua   gcua  ua  gacauacacaca cacu                                                                                                                      c
 ||||||  |||||  ||||||||||| || |||||||||||   ||||  ||  |||||||||||| ||||                                                                                                                       
 caacca  aaauc  ugacuucgacg uc uacuggaucau   ugau  au  uugugugugugu guga                                                                                                                      a
a      cu     ac           -  c           -ga    ag  au            -    cugugugugugguguauguagauauauauaugauuauuuuugucuuaaaacuugcccaaguuuaacuacacaugguauguguuucacguacguacauuuaauacauguaugugugugu 


mirna_id: ath-MIR169b
hairpin:
     c    u  aa        agu    u      u    C    -     UG           cgu    aac   g       a    gu 
cccaa ggag ag  uugcauga   ggag agagua aaug AGCC AAGGA  ACUUGCCGGaa   uguu   cau cauauga uaau  g
||||| |||| ||  ||||||||   |||| |||||| |||| |||| |||||  |||||||||||   ||||   ||| ||||||| ||||   
ggguu ccuu uc  aacguacu   cuuc ucucgu uuac ucgg uuccu  ugaacggucuu   acaa   gua guguauu auua  a
     -    -  -a        cuu    -      u    a    c     gu           uau    ---   -       a    gu 


mirna_id: ath-MIR169c
hairpin:
ucguccauuaugaguauuaauuaugguuagggaaucuuacagaaugaaaaugaaggugugaauggauu  c     ua      u     -u     aa    cauu     uC     A              --       uauuaugauuacucuauauucgauuuauauuauggagaugaugguuuauauauauuuacuuaucuacauaguuuuag 
                                                                    gu ucauc  aagccu gaaug  gggaa  aggc    guugu  AGCCA GGAUGACUUGCCGG  uagcuug                                                                             u
                                                                    || |||||  |||||| |||||  |||||  ||||    |||||  ||||| ||||||||||||||  |||||||                                                                              
                                                                    ca aguag  uucgga cuuac  uccuu  ucug    caacg  ucggu ucuacugaacggcc  aucgaac                                                                             u
------------------------aguagguauaaguauaguauaaucacuauaaacccuaaaaaaug  c     ca      u     uc     -c    ---u     ua     a              cg       caaugugaagaacgggguuguguguauauauuuauucauuuaugaaaaagcauaauauaaugcaugcuuuuuuuuag 


mirna_id: ath-MIR169d
hairpin:
     a      c   -   g     auu      u     U         A          augu      ca    uu 
guauc uagagu uug cau gaaaa   aaagaa gagau GAGCCAAGG UGACUUGCCG    uaucaa  aauc  a
||||| |||||| ||| ||| |||||   |||||| ||||| ||||||||| ||||||||||    ||||||  ||||   
uauag aucuca aac gua cuuuu   uuucuu cuuug cucgguucc guugaacggc    gugguu  uuag  a
     -      -   u   a     -cu      c     u         a          --cu      --    uc 


mirna_id: ath-MIR169e
hairpin:
-------ugaugaugaugaugagucacuaauuaauu     a      c   -   g     au  aa  u     U         A          auuuucucaacgaau 
                                    guauc uagagu uug cau gaaaa  ag  aa gagau GAGCCAAGG UGACUUGCCG               c
                                    ||||| |||||| ||| ||| |||||  ||  || ||||| ||||||||| ||||||||||               u
                                    cauag aucuca aac gua cuuuu  uc  uu cuuug cucgguuuc guugaacggc               u
acuacuuacuacuacuauauauacuauacaccaauc     -      -   u   g     cu  cc  c     u         a          cuaugguauuaguca 


mirna_id: ath-MIR169f
hairpin:
      u     a       ac       auU         A           uuuaaacccaaccgguuuaugaccauuga 
gggucu gcaug aggaaua  gaaugga   GAGCCAAGG UGACUUGCCGg                             u
|||||| ||||| |||||||  |||||||   ||||||||| |||||||||||                             u
cuuaga uguac uucuuau  cuugcuu   cucgguucc guugaacgguc                             u
      u     c       cu       cgu         a           ugugcuuaguugucuaacacuuacucugg 


mirna_id: ath-MIR169g
hairpin:
-ugccuauaaauaccuucaucacgaguaugacaagaucac   a       -agaaaggu       -    ga      ------------         ----      g  ucucuaguu     aga      u    --      au      u    uU         A            uuuuuu     au     uaa 
                                        aag caagaaa         agagaaa acau  uaauga            ugauuacga    ugauga ag         guauc   gggucu gcau  ggaaga  agagaa gagg  GAGCCAAGG UGACUUGCCGgg      uacca  gaauc   u
                                        ||| |||||||         ||||||| ||||  ||||||            |||||||||    |||||| ||         |||||   |||||| ||||  ||||||  |||||| ||||  ||||||||| ||||||||||||      |||||  |||||   u
                                        uuc guuuuuu         ucuuuuu ugua  guuacu            acuagugcu    acuacu uc         uauag   cucaga ugua  uuuucu  ucucuu cuuu  cUCGGUUCC GUUGAACGGCCU      guggu  cuuag   a
acguuuuuguuuuuagacuaguaaguuuagcuuuuuggca   g       aagcguagu       g    aa      uuaauguuucaa         aagu      a  ---------     aac      c    gg      --      c    gu         A            ------     --     uca 


mirna_id: ath-MIR169h
hairpin:
u  uau        aug    c       --       c    g   -          U    U     -  uuuua     uauaua  a      cac  g 
 ca   aagagaaa   guga augaaga  augagaa uugu ugg UAGCCAAGGA GACU GCCUG cg     gacca      uc aagacu   uc a
 ||   ||||||||   |||| |||||||  ||||||| |||| ||| |||||||||| |||| ||||| ||     |||||      || ||||||   ||  
 gu   uucucuuu   cacu uacuucu  uacucuu aaca acu aucgguuccu cuga cggac gc     uuggu      ag uucuga   ag u
g  uuu        --a    -       cu       -    a   u          -    -     u  --ugg     ----ug  a      --u  c 


mirna_id: ath-MIR169i
hairpin:
     -a      aa       -u       u     uu  -          U    U      -c     -----gu        uuuagugucuuguuugaaguca 
gaagg  gauguc  agaugaa  agaagaa cauau  gg UAGCCAAGGA GACU GCCUGa  ucuuu       guaaaaug                      c
|||||  ||||||  |||||||  ||||||| |||||  || |||||||||| |||| ||||||  |||||       ||||||||                       
cuucc  uuacag  ucuacuu  ucuucuu guaua  cc aucgguuccu cuga cggacu  agaaa       cguuuuac                      u
     ac      ac       uc       -     uu  u          -    -      au     aaauauu        caguaacgaacuauguugaaua 


mirna_id: ath-MIR169j
hairpin:
gaguauaaugaggaagagaggucuaacauggcgaaaagagucauguuua           U    U      -u   uuuc    c  u        uuguaauucaug     ug           auu 
                                                 gUAGCCAAGGA GACU GCCUGa  cuu    accu ca gauucaau            gguuu  gauuauuauac   c
                                                 ||||||||||| |||| ||||||  |||    |||| || ||||||||            |||||  |||||||||||    
                                                 uaucgguuccu cuga cggacu  gga    uggg gu cuaaguug            cuaaa  uuaauaauaug   a
-------------------------gcacuuacuuuuuucguacaguuc           -    -      uu   ---u    c  u        ----------ua     gu           aaa 


mirna_id: ath-MIR169k
hairpin:
-uua     -       aa  a   -au         a   uu  -          U    U     -cu   ----c               augucaug     aa     u 
    gaagg agauguc  ag uga   aggagaaca uau  gg UAGCCAAGGA GACU GCCUG   ucu     ugaacaaaauggucg        uuuug  gugac a
    ||||| |||||||  || |||   ||||||||| |||  || |||||||||| |||| |||||   |||     |||||||||||||||        |||||  ||||| u
    cuucc uuuauag  uc acu   ucuucuugu aua  cc aucgguuccu cuga cggac   aga     auuuguuuuaccagu        agaac  uauug a
ccua     a       ac  a   cuu         -   uu  u          -    -     uac   uaaau               ------aa     ca     a 


mirna_id: ath-MIR169l
hairpin:
augaagaagagaggucuaauauggcgaaaagagucauguuua           U    U      -u   uuuc    c  u        uuuaaguucgug     ug           g u 
                                          aUAGCCAAGGA GACU GCCUGa  cuu    accu ca gauucaau            gauuu  gauuauuaugc u u
                                          ||||||||||| |||| ||||||  |||    |||| || ||||||||            |||||  ||||||||||| | a
                                          uaucgguuucu cuga cggacu  gga    uggg gu cuaaguug            cuaga  uuaauaauaug a a
----------------------cuacuucuuucguacaguuc           -    -      uu   ---u    c  u        ----------ua     gu           g a 


mirna_id: ath-MIR169m
hairpin:
ua     -   a   aa      -au       u     uu  -          U    U     -uu    ----            guuagug    -      caa     u 
  gaagg aga guc  agauga   agaagaa cauau  gg UAGCCAAGGA GACU GCCUG   ucuu    ugaguaaaaugg       ucau guuuga   gugac a
  ||||| ||| |||  ||||||   ||||||| |||||  || |||||||||| |||| |||||   ||||    ||||||||||||       |||| ||||||   ||||| u
  cuucc uuu cag  ucuacu   ucuucuu guaua  cc aucgguuccu cuga cggac   agaa    acucauuuuacc       agua cgaacu   uauug a
ua     a   g   ac      cuc       -     uu  u          -    -     uac    aacu            -------    a      --a     a 


mirna_id: ath-MIR169n
hairpin:
gaugaagaagagaggucuaacauggcggaaagcgucauguuua           U    U      -u   uuuc    c  c       uuucaaauu    cau    ga         cuu 
                                           gUAGCCAAGGA GACU GCCUGa  cuu    gccu ca gauucaa         caug   uuug  uuauuauac   u
                                           ||||||||||| |||| ||||||  |||    |||| || |||||||         ||||   ||||  |||||||||    
                                           uaucgguuucu cuga cggacu  gga    uggg gu cuaaguu         guac   aaac  gauaauaug   u
--------------------uaccuaccuuuuucguacaguuc           -    -      uu   ---u    c  u       ---------    uau    ug         aaa 


mirna_id: ath-MIR171b
hairpin:
-----ugcaa   --aa    a      a ug          a     --    c    uaa 
          ggu    cgcg gauauu g  cgguucaauc aauag  ucgu cucu   c
          |||    |||| |||||| |  |||||||||| |||||  |||| ||||    
          cca    gcGC CUAUAA C  GCCGAGUUag uuguu  ggca gagg   u
acgguaaaaa   aaug    A      C GU          c     gu    a    uac 


mirna_id: ath-MIR171c
hairpin:
ugagcgcacuaucggacaucaaauacga        ug             -      uac     ug 
                            gauauugg  cgguucaaucaga aaaccg   ucuuu  u
                            ||||||||  ||||||||||||| ||||||   |||||   
                            CUAUAACC  GCCGAGUUaguuu uuuggc   agaaa  u
-------------------auuugcGCA        GU             a      --u     uu 


mirna_id: ath-MIR172c
hairpin:
        uuc  u    g                a  --a  -       uau  ---g       aa 
agcuacug   gc guug agcaucaucaagauuc ca   au caucaag   uc    uguaaau  a
||||||||   || |||| |||||||||||||||| ||   || |||||||   ||    |||||||   
ucggugac   cg cGAC UCGUAGUAGUUCUAAG gu   ua guaguuu   ag    guauuua  c
        uaa  u    G                A  aug  u       -uu  auua       cc 


mirna_id: ath-MIR172d
hairpin:
       -gu    ua     a    u         ag        uucucu  u      uc 
agucauu   uugc  uugca cauc ucaagauuc  aaaucaga      ua ggguuu  u
|||||||   ||||  ||||| |||| |||||||||  ||||||||      || ||||||   
ucgguaa   aacg  GACGU GUAG AGUUCUAAG  uuugguuu      au uccgag  u
       auu    gc     C    U         Ag        ---uuu  u      uu 


mirna_id: ath-MIR390a
hairpin:
    --      au u  a          G           --u   -   c  a 
guag  agaaga  c gu AAGCUCAGGA GGAUAGCGCCa   gau gau ac u
||||  ||||||  | || |||||||||| |||||||||||   ||| ||| ||  
cauc  ucuucu  g ua uuugaguccu ccuaucgcggu   uua cua ug u
    au      cg u  c          a           uuu   u   u  c 


mirna_id: ath-MIR390b
hairpin:
     au      aA         G           uggcucaccagugcuguauguuu 
gagaa  agcuau  AGCUCAGGA GGAUAGCGCCa                       u
|||||  ||||||  ||||||||| |||||||||||                        
uucuu  ucgaua  uugaguccu ccuaucgcggu                       g
     cu      cc         a           ugucuauauguacaugcguauau 


mirna_id: ath-MIR391
hairpin:
    --       cacau    g   ----     cu   u  a g  u    aac    a   -   au     U  C          G  C      -----cu      
uaga  gugauua     acaa ugg    ucuug  ucu cu u gu uuaa   ugca aua aag  uugcU CG AGGAGAGAUA CG CAucac       cuucu 
||||  |||||||     |||| |||    |||||  ||| || | || ||||   |||| ||| |||  ||||| || |||||||||| || ||||||       |||| a
aucu  cacuaau     uguu acu    ggaac  aga ga g ca aauu   acgu uau uuc  aacga gc uccucucuau gc guggug       gaaga 
    cc       -aacu    g   uuau     -u   -  - g  u    -cu    a   a   cu     u  a          g  a      aucaauu      


mirna_id: ath-MIR393a
hairpin:
a     a              C    U     -u     aggugaauucuccccauauuuucuuua 
 gagga ggaUCCAAAGGGAU GCAU GAUCC  aauua                           u
 ||||| |||||||||||||| |||| |||||  |||||                           a
 uuccu cuuagguuucucua cgua cuagg  uuggu                           a
c     a              u    -     uu     ucguuuaaaaacacuaaauaaacgguu 


mirna_id: ath-MIR393b
hairpin:
      a                   U     ---u  u     ugauuuauuccccaauaauuguuuuuuuuuuccuucu 
agagaa ggaUCCAAAGGGAUCGCAU GAUCC    aa uaagc                                     c
|||||| ||||||||||||||||||| |||||    || |||||                                      
uuucuu cuuagguuucucuagcgua cuagg    uu auucg                                     a
      a                   -     ccuu  c     uuuuacaaaccuuaaacaaaaagaagguagaaagcua 


mirna_id: ath-MIR394a
hairpin:
  u    -  a   -      U C GU            -a     -au          a 
cu acag uc ucu UUGGCA U U  CCACCUCCuucu  uacau   augcaugugu u
|| |||| || ||| |||||| | |  ||||||||||||  |||||   ||||||||||  
ga uguc ag aga aaccgu a a  gguggaggaaga  gugug   ugcguauaua a
  u    u  -   u      c u ug            aa     cuu          u 


mirna_id: ath-MIR394b
hairpin:
  u     ga   -      U C             ucucuauauuuauguguaauaagu 
cu acaga  ucu UUGGCA U UGUCCACCUCCuc                        g
|| |||||  ||| |||||| | |||||||||||||                         
ga ugucu  aga aaccgu a acggguggaggag                        u
  u     ag   u      c u             aaugcuuuguguggcaucuaugca 


mirna_id: ath-MIR395a
hairpin:
   uc   ua         ug         u    gauaca    u 
aug  ucc  gaguuccuc  agcacuuca uggg      auuu u
|||  |||  |||||||||  ||||||||| ||||      ||||  
uac  agg  CUCAAGGGG  UUGUGAAGU accu      uaaa c
   cc   cc         GU         C    -auuag    u 


mirna_id: ath-MIR395b
hairpin:
   u c   u         uu         u    aa    uca     a 
aug c cca gaguucccu  aacgcuuca uguu  auac   aagcc c
||| | ||| |||||||||  ||||||||| ||||  ||||   ||||| a
uac g ggu CUCAGGGGG  UUGUGAAGU acaa  uaug   uuugg u
   u u   u         GU         C    ca    ---     u 


mirna_id: ath-MIR395c
hairpin:
   uc   -au         uu         u     a    uca     a 
aug  cac   gaguucccu  aacgcuuca uguug auac   aagcc c
|||  |||   |||||||||  ||||||||| ||||| ||||   ||||| a
uac  gug   CUCAGGGGG  UUGUGAAGU acaau uaug   uuugg u
   -u   guu         GU         C     a    ---     u 


mirna_id: ath-MIR395d
hairpin:
   u c  ua         ug         u     --au      uuca 
aug c uc  gaguucucc  aacacuuca uggaa    uuguua    g
||| | ||  |||||||||  ||||||||| |||||    ||||||     
uac g ag  CUCAAGGGG  UUGUGAAGU accuu    gacaau    u
   u u  cc         GU         C     aauu      cgaa 


mirna_id: ath-MIR395e
hairpin:
auguuu   -a         ug         u      u  a     u 
      ucu  gaguuccuc  agcacuuca uggaga ac auuuu u
      |||  |||||||||  ||||||||| |||||| || |||||  
      ggg  CUCAAGGGG  UUGUGAAGU aucuuu ug uaaaa a
-uaguc   cc         GU         C      -  a     u 


mirna_id: ath-MIR395f
hairpin:
     c   u                    u       -acu   --uu   -   u 
auguc ccu gaguucccuuaaacgcuuca uguucau    uug    auc auc a
||||| ||| |||||||||||||||||||| |||||||    |||    ||| |||  
uacag gga CUCAGGGGGGUUUGUGAAGU acaagua    aac    uag uag u
     u   u                    C       gucu   uaac   c   c 


mirna_id: ath-MIR396a
hairpin:
c       uc            C            a -u  -uu    uuuuuuuuuuuuucuuuugauaucucu 
 ucuguau  UUCCACAGCUUU UUGAACUGcaaa c  uc   caga                           u
 |||||||  |||||||||||| |||||||||||| |  ||   ||||                           a
 agacaua  agggugucgaaa aacuuggcguuu g  ag   gucu                           c
c       ga            u            a uu  cuc    cuauacuucuuuuagugauaaaauacg 


mirna_id: ath-MIR396b
hairpin:
g     ac                   A     uuuuucauuuccauuguuuuuuucuuaaacaaa 
 gucau  uuUUCCACAGCUUUCUUGA CUUuc                                 a
 |||||  ||||||||||||||||||| |||||                                 g
 cagua  aaagggugucgaaagaacu gaagg                                 u
a     ca                   c     uuuuacgaauuagaauuucaaaaaaaagaagaa 


mirna_id: ath-MIR397a
hairpin:
-u   u      C                A     u   g     uuu      g 
  gaa gaacaU AUUGAGUGCAGCGUUG UGuaa uuc uuuug   uucauu u
  ||| |||||| |||||||||||||||| ||||| ||| |||||   ||||||  
  cuu uuugua uaacucgcguugcgac auauu aag aaaau   agguaa u
au   -      u                c     u   -     --u      g 


mirna_id: ath-MIR397b
hairpin:
-u   u      C          U          auuu     a   ----u    ca 
  gaa gaacaU AUUGAGUGCA CGUUGAUGua    uacuu uuu     auuc  u
  ||| |||||| |||||||||| ||||||||||    ||||| |||     ||||  u
  cuu uuugua uaacuuacgu gcgacuauau    augaa aaa     uaag  g
au   -      u          u          ----     g   uuaau    uu 


mirna_id: ath-MIR398a
hairpin:
ugaaau        a     a  u       --ua  cu        uucaaa 
      uucaaagg guggc ug gaacaca    uc  augguuuc      u
      |||||||| ||||| || |||||||    ||  ||||||||       
      aaguUUCC CACUG AC CUUGUGU    ag  uaccaaag      u
cccucu        C     G  U       uuug  -u        uuaccu 


mirna_id: ath-MIR398b
hairpin:
u   u    a     u    a          c   u   caac       ---        
 gga cucg caggg ugau ugagaacaca gag aau    ggcugua   augacgc 
 ||| |||| ||||| |||| |||||||||| ||| |||    |||||||   |||||| u
 ucu gagu GUCCC ACUG ACUCUUGUGU cuu uug    ucgacau   uacugca 
u   c    c     C    G          a   -   -cuc       ugu        


mirna_id: ath-MIR398c
hairpin:
u   u    a     u    a         -----     caaucaac    a    ---      
 gga cucg caggg ugau ugagaacac     acgag        ggcu uaac   gacgc 
 ||| |||| ||||| |||| |||||||||     |||||        |||| ||||   |||| u
 ucu gagu GUCCC ACUG ACUCUUGUG     ugcuc        ucga auug   cugca 
u   c    c     C    G         Uacuu     --------    c    uua      


mirna_id: ath-MIR399a
hairpin:
aaau c           a       a        a   -     c     -u uu     cu 
    g auuacagggua gaucucu uuggcagg aac cauua uuaga  c  ugcau  c
    | ||||||||||| ||||||| |||||||| ||| ||||| |||||  |  |||||   
    c uaauGUCCCGU UUAGAGG AACCGUcu uug gugau aauuu  g  acgua  u
ucuu u           -       A        a   a     u     uc uu     uu 


mirna_id: ath-MIR399b
hairpin:
uc               c      a          c    cuuccaaauauacacauacauauaug 
  acuaguuuuagggcg cucucc uuggcagguc uuua                          a
  ||||||||||||||| |||||| |||||||||| ||||                          a
  uggucaaaGUCCCGU GAGAGG AACCGUccag aaau                          u
cu               U      A          u    auuuagcuaguagccuuuaaaagcua 


mirna_id: ath-MIR399c
hairpin:
        a        u      a        c   u      uuu  aucuuuu 
ggagcagu auagggca cuuucu uuggcagg gac uggcua   gu       g
|||||||| |||||||| |||||| |||||||| ||| ||||||   ||        
cuucguca uGUCCCGU GAGAGG AACCGUuc cug aucggu   ca       u
        c        U      A        a   u      uau  guucuug 


mirna_id: ath-MIR399d
hairpin:
  u      a u        a     a       -uc     -----g  ua 
gg uggauu c gggcgaau cuccu uggcaga   gcauu      gc  g
|| |||||| | |||||||| ||||| |||||||   |||||      ||  a
cc acuuaa G CCCGUUUA GAGGA ACCGUcu   cguaa      cg  u
  u      c C        -     A       cuu     aaugaa  ua 


mirna_id: ath-MIR399e
hairpin:
-   a     a ag        c   a       u     u      -cccu  u 
 gaa gcauu c  ggcgaauc ucu uuggcag ggaag ugauga     ua a
 ||| ||||| |  |||||||| ||| ||||||| ||||| ||||||     || u
 cuu cguaa G  CCGUUUAG AGG AACCGUc ccuuu acuacu     au g
a   -     c CU        -   A       u     u      cuuuu  u 


mirna_id: ath-MIR399f
hairpin:
auau c     a     a    a  a          u  -     -uu    cu       
    g auuac gggca gauc cc uuggcagaga cu auuac   cauu  ugcauc 
    | ||||| ||||| |||| || |||||||||| || |||||   ||||  ||||| a
    c uaauG CCCGU UUAG GG AACCGUcucu ga uggug   guaa  acguau 
uucu u     G     -    A  A          c  g     uuu    au       


mirna_id: osa-MIR393a
hairpin:
u        a                U     u   uc   -  ---------  cu    u 
 ggggaagc UCCAAAGGGAUCGCAU GAUCc uca  gcu cu         cg  cgcu c
 |||||||| |||||||||||||||| ||||| |||  ||| ||         ||  |||| c
 cuccuucg agguuuuccuagcgua cuagg agu  cga ga         gc  gcgg a
u        g                -     c   -u   c  acaucugcu  ug    u 


mirna_id: osa-MIR394
hairpin:
ua   - g      -      U C           -uu     auccuca    ca 
  cug a aguucu UUGGCA U UGUCCACCUCC   gucga       gaga  g
  ||| | |||||| |||||| | |||||||||||   |||||       ||||   
  gau u ucgagg aaccgu a acggguggagg   uaguu       cucu  a
-g   g g      u      c u           uuc     gucuaua    aa 


mirna_id: osa-MIR395b
hairpin:
ga u c             u                c   g a 
  g c cuaggaguuccuu caagcacuuuacgaca acu u u
  | | ||||||||||||| |||||||||||||||| ||| |  
  c g gauuCUCAAGGGG GUUUGUGAAGUGcugu uga a u
cg u u             -                -   g g 


mirna_id: osa-MIR395d
hairpin:
  au     u         u              ----    cua 
gu  ugucg gaguucccu caagcacuucacgu    ggca   u
||  ||||| ||||||||| ||||||||||||||    ||||   c
ca  auagc CUCAAGGGG GUUUGUGAAGUGua    ccgu   u
  cu     u         -              ucau    aac 


mirna_id: osa-MIR395e
hairpin:
  au               u   c         ----u   a  gu 
gu  uaucgagaguucccu caa cacuucacg     ggc cu  u
||  ||||||||||||||| ||| |||||||||     ||| ||   
ca  auagcuCUCAAGGGG GUU GUGAAGUGu     ccg ga  u
  cu               -   U         guuau   -  ac 


mirna_id: osa-MIR395g
hairpin:
guau  c  u         u             --u    cua 
    ca cg gaguucccu cgaacacuucacg   ggca   u
    || || ||||||||| |||||||||||||   ||||   u
    gu gc CUCAAGGGG GUUUGUGAAGUGu   ccgu   u
uacu  a  u         -             uau    aac 


mirna_id: osa-MIR395h
hairpin:
u                     c         -   ---   u    -  -    a aa 
 uguuaccuggaguuuccucaa acacuucac auc   ugc aggc cc uauu c  u
 ||||||||||||||||||||| ||||||||| |||   ||| |||| || |||| |   
 acgguggauCUCAAGGGGGUU UGUGAAGUG ugg   acg ucug gg guaa g  u
c                     -         a   uua   -    a  u    c cg 


mirna_id: osa-MIR395i
hairpin:
guuu            u                 ------     uu     u 
    uaccgggaguuc cuucaagcacuucacgu      agagc  ucuau g
    |||||||||||| |||||||||||||||||      |||||  |||||  
    augguuCUCAAG GGGGUUUGUGAAGUGua      uuucg  aggua a
aacc            -                 acaaga     --     c 


mirna_id: osa-MIR395j
hairpin:
    uc  a          g             -   aa     guuac     ugu 
gugu  cc agaguuccuu caagcacuucaca uag  cuucu     ucuca   a
||||  || |||||||||| ||||||||||||| |||  |||||     |||||    
cacg  gg uCUCAAGGGG GUUUGUGAAGUGu auc  gaaga     agggu   a
    gu  a          -             c   --     guuca     uac 


mirna_id: osa-MIR395k
hairpin:
guuu           u                  ------       uc  u 
    uaucgggaguu ccuucaagcacuucacgu      agagcuu  ua u
    ||||||||||| ||||||||||||||||||      |||||||  ||  
    auaguuCUCAA GGGGGUUUGUGAAGUGua      uuucgag  au g
aacc           -                  acaagg       gu  a 


mirna_id: osa-MIR395l
hairpin:
gc      u              c          ---uuuc     ca 
  guuccu ccaagcacuucaca agagcuuuua       ucuca  u
  |||||| |||||||||||||| ||||||||||       |||||  c
  CAAGGG GGUUUGUGAAGUGu uuucgaagau       agagu  g
CU      -              -          uaauuca     ua 


mirna_id: osa-MIR395s
hairpin:
guau  c  u         u             --u    cua 
    ca cg gaguucccu caagcacuucacg   ggca   u
    || || ||||||||| |||||||||||||   ||||   u
    gu gc CUCAAGGGG GUUUGUGAAGUGu   ccgu   u
ccuu  a  u         -             uau    aac 


mirna_id: osa-MIR395t
hairpin:
uuau   -        c         c      ---gc  a         --a        -ug   -----    cc 
    cca cuggaguu uccucaaac acuuca     ag uagcuagcu   ggccucau   cau     ugca  a
    ||| |||||||| ||||||||| ||||||     || |||||||||   ||||||||   |||     ||||  c
    ggu ggcCUCAA AGGGGUUUG UGAAGU     uc gucgauuga   ccggggua   gua     acgu  u
-aac   u        -         -      Gauau  -         aaa        cga   ucaau    ug 


mirna_id: osa-MIR395c
hairpin:
guau    a       u                -    a  auua 
    uauc agaguuc cuuuaagcacuucaua cgac cc    u
    |||| ||||||| |||||||||||||||| |||| ||     
    gugg uCUCAAG GAGGUUUGUGAAGUGu guug gg    u
uacu    c       -                u    -  auau 


mirna_id: osa-MIR395a
hairpin:
u    c             u   uc       --   g      au    --a        u c  ug  cu   a 
 uguc acuggaguucucc caa  cacuuca  gua auagcu  ggcu   ggccucau g au  ca  guu c
 |||| ||||||||||||| |||  |||||||  ||| ||||||  ||||   |||||||| | ||  ||  |||  
 acag ugacCUCAAGGGG GUU  GUGAAGU  uau uaucga  ucga   ccggggua c ua  gu  caa a
c    u             -   -C       Ga   g      --    aaa        - -  gu  --   u 


mirna_id: osa-MIR395f
hairpin:
u     c         u   u  c           ---  au 
 uaucg ggguucccu caa ca uucacauggua   cu  u
 ||||| ||||||||| ||| || |||||||||||   ||   
 guagc CUCAAGGGG GUU GU AAGUGuaucau   ga  u
u     u         -   U  U           ccg  ac 


mirna_id: osa-MIR395u
hairpin:
---      cca   a      u     aa     ga      auu 
   acacug   gga uucccu caagc  uucau  aacaau   u
   ||||||   ||| |||||| |||||  |||||  ||||||   u
   ugugac   uCU AAGGGG GUUUG  AAGUG  uuguug   g
cgc      ---   A      -     CG     --      aga 


mirna_id: osa-MIR396a
hairpin:
     ug  c            C         acgcaugaugaauaaucccuuugguuaauugugaucuggucucu 
cuuug  au UUCCACAGCUUU UUGAACUGc                                            g
|||||  || |||||||||||| |||||||||                                             
gagac  ua AGGGUGUCGAAA AACUUGacg                                            a
     gu  A            U         agagagacuacgguuacguuggcuagcucagauugaugcuagag 


mirna_id: osa-MIR396b
hairpin:
         c            C           -   ---    ag     a    cc 
cuuuguggu UUCCACAGCUUU UUGAACUGcau cuu   ugag  agauu gcau  c
||||||||| |||||||||||| ||||||||||| |||   ||||  ||||| ||||   
gagacauua AGGGUGUCGAAA AACUUGacgug gag   guuc  uuuag ugug  u
         A            U           u   cac    gu     g    ua 


mirna_id: osa-MIR396c
hairpin:
u     gc                   A     -     --g    a   -----a     auu    ga  gau 
 gccau  cuUUCCACAGCUUUCUUGA CUUcu cuugu   ccuc cuc      cuuuc   acug  ga   a
 |||||  ||||||||||||||||||| ||||| |||||   |||| |||      |||||   ||||  ||    
 cggua  GAAGGGUGUCGAAAGAACU Ggaga gaacg   ggag ggg      gaagg   ugac  cu   u
a     aa                   G     a     uga    a   auauuc     ---    ua  acg 


mirna_id: osa-MIR397a
hairpin:
a          C        C           acaa   -ua       -c    ug 
 ucaaaugcaU AUUGAGUG AGCGUUGAUGa    cgg   accgguc  augu  a
 |||||||||| |||||||| |||||||||||    |||   |||||||  ||||   
 gguuugcgua uaacucac ucgcgacuacu    guc   uggccgg  uacg  u
c          c        u           acua   uag       uu    cg 


mirna_id: osa-MIR397b
hairpin:
  g      aUU    A      C    A       gcc    ggcuaaauuaauuag 
ag gaaggc   AUUG GUGCAG GUUG UGaaccu   ggcc               c
|| ||||||   |||| |||||| |||| |||||||   ||||                
uc uuuccg   uaac cacguc cgac acuugga   ucgg               a
  g      cac    c      a    c       aac    ucaaagucugaaaga 


mirna_id: osa-MIR398a
hairpin:
gcu           a   gua            g   caauacaauguauggugagc 
   gaacccagagg gug   cugagaacacag ugc                    u
   ||||||||||| |||   |||||||||||| |||                     
   uuuggguUUCC CAC   GACUCUUGUGUc aug                    a
uuc           C   -UG            a   ucuuaaugagguaauauguc 


mirna_id: osa-MIR398b
hairpin:
        ua         g              -u   g  g 
ggaguucc  caggggcga cugggaacacacgg  gau ag c
||||||||  ||||||||| ||||||||||||||  ||| || g
ucucaggg  GUCCCCGCU GACUCUUGUGUgcu  cug uc g
        cc         G              uu   g  u 


mirna_id: osa-MIR399a
hairpin:
cugu    ua           a          aagggcaagcaguagaaaccaugcgugcuugcuagagcugg 
    gaau  cagggcaguuc ccuuuggcac                                         a
    ||||  ||||||||||| ||||||||||                                         a
    uuua  GUCCCGUUAAG GGAAACCGUg                                         a
cugu    gc           A          cucuagacacuagggacuugguacguuacgauggucguagu 


mirna_id: osa-MIR399b
hairpin:
guga    ca   u           c          -  aga gc  aa 
    gaau  cag gcgauucuccu uggcauggca ug   g  cu  a
    ||||  ||| ||||||||||| |||||||||| ||   |  ||  a
    cuua  GUC CGUUAAGAGGA ACCGUgccgu ac   c  ga  a
aaga    cc   C           A          c  --g -a  ga 


mirna_id: osa-MIR399c
hairpin:
c  c    ua          u               cgga   aa   au c   g 
 gg gaau  cagggcgguu cuccuuuggcacgua    ggc  ggc  g ggu a
 || ||||  |||||||||| |||||||||||||||    |||  |||  | ||| a
 cc cuua  GUCCCGUUAA GAGGAAACCGUgcgu    ccg  ucg  c cua a
a  a    gc          -               ---a   -a   au u   a 


mirna_id: osa-MIR399d
hairpin:
        a     -          c        gcauucua     uuuuguaauuguauaugcauccaagguauauacaguccggccauggugcuacauugcaaucauccauaugugauugcauuguguauauauauacau 
aagacagu guagg cagcucuccu uggcaggu        gguga                                                                                                g
|||||||| ||||| |||||||||| ||||||||        |||||                                                                                                g
uucuguca cGUCC GUUGAGAGGA ACCGUccg        ccacu                                                                                                u
        g     C          A        --gcaaaa     uaaguuagcgauguaccgcuagcuaguuucgaucaucgucgaccauauauguauguacguguauugguuggcuauauacuaccagauaguuuccgg 


mirna_id: osa-MIR399e
hairpin:
aca      a c   ug       c         uuc    c  ca  --       ug 
   ugcauu c ggg  agucuuc uuggcagug   gaau gg  gu  accgguc  c
   |||||| | |||  ||||||| |||||||||   |||| ||  ||  |||||||  a
   acguaa G CCC  UUAGAGG AACCGUcgc   cuug cc  ua  uggcuag  a
uca      c A   GU       A         -ca    a  ac  ac       ug 


mirna_id: osa-MIR399f
hairpin:
ug       a c    cau        g       gu   c  --auu   cacuucac 
  guggauu c gggc   gucuccuu ggcagag  gau ag     gca        u
  ||||||| | ||||   |||||||| |||||||  ||| ||     |||         
  caccuaa G CCCG   UAGAGGAA CCGUcuc  uug uc     cgu        u
ua       c A    -UU        A       uc   u  gaucu   ucuccaac 


mirna_id: osa-MIR399g
hairpin:
au   c     a      cua    a        --       -  ug  ua    uau   u 
  gug auugc gggcaa   cucc uuggcaga  gggaugg au  ga  ugga   ggc g
  ||| ||||| ||||||   |||| ||||||||  ||||||| ||  ||  ||||   |||  
  cac uagcG CCCGUU   GAGG AACCGUcu  cccuacc ua  uu  accu   ucg a
cu   u     A      -UA    A        au       c  gu  --    ---   u 


mirna_id: osa-MIR399h
hairpin:
cca      a              c           ------------c    g 
   ugcauu cugggcaggucucc uuggcaguggc             gauc a
   |||||| |||||||||||||| |||||||||||             |||| g
   acguaa GACCCGUUCAGAGG AACCGUcaccg             cuag c
uag      c              A           aaaacgcaccaaa    u 


mirna_id: osa-MIR399i
hairpin:
guga    ca   u           c     u    -   a  -  ------------g    g 
    gaau  cag gcaguucuccu uggca ggag ggc ag ag             agcu a
    ||||  ||| ||||||||||| ||||| |||| ||| || ||             ||||  
    cuua  GUC CGUCGAGAGGA ACCGU ccuu ccg uc uc             ucga a
guga    cc   C           A     c    u   a  g  aaauaguagguaa    u 


mirna_id: osa-MIR399j
hairpin:
          c     uc     uc         a  ---au    ---   cuu 
aguccaguuu agggc  cucuc  uuggcaggg gc     guga   agu   u
|||||||||| |||||  |||||  ||||||||| ||     ||||   |||    
ucaggucaaa UCCCG  GAGAG  AACCGUcuc cg     uacu   ucg   u
          A     UU     GA         c  acuuu    cac   aug 


mirna_id: osa-MIR399k
hairpin:
  c  c   g u         g           auguugcaguucaucaucg 
ag ug auu c gggcaaguu uccuuuggcag                   a
|| || ||| | ||||||||| |||||||||||                   u
uc ac uaa G CCCGUUUAA AGGAAACCGUc                   g
  u  u   g C         -           aucagaccauugggggucc 


mirna_id: ebv-mir-BHRF1-1
hairpin:
-ua       GA    C     A    cc  uu 
   uUAACCU  UCAG CCCGG GUUg  ug  u
   |||||||  |||| ||||| ||||  ||   
   aguugga  aguc gggcc caau  ac  c
aac       ga    c     c    -c  ua 


mirna_id: ebv-mir-BHRF1-2
hairpin:
       A           C       ugau 
cuuuuAA UUCUGUUGCAG AGAUAGC    a
||||||| ||||||||||| |||||||    c
gaaAGUU AAGACGGCGUU UCUAUug    c
       A           U       uaac 


mirna_id: ebv-mir-BHRF1-3
hairpin:
--uc      GA      U      Aca   aau 
    UAACGG  AGUGUG AAGCAC   cgu   u
    ||||||  |||||| ||||||   |||   u
    auugcu  ucgcac uucgug   gcg   g
uaaa      uc      -      ---   aac 


mirna_id: ebv-mir-BART1
hairpin:
-   g --U U       -    AC        a  a 
 ggg g   C UAGUGGA AGUG  GUGCUGUG au c
 ||| |   | ||||||| ||||  |||||||| ||  
 ccc c   G AUCACCU UCGC  CACGAUac ug a
g   g uCU U       A    --        c  g 


mirna_id: ebv-mir-BART2
hairpin:
ac        G  -U    -       uguc 
  UAUUUUCU CA  UCGC CCUUGCg    c
  |||||||| ||  |||| |||||||     
  AUAAAAGA GU  AGCG GGAAcgu    a
AA        G  UU    A       uguu 


mirna_id: ath-MIR400
hairpin:
--u    a ug         G              a a    gu      a 
   gagg u  uuUAUGAGA UAUUAUAAGUCACu c uuug  aagcaa g
   |||| |  ||||||||| |||||||||||||| | ||||  ||||||  
   uuuu g  aaguacucu auaguauucaguga g aaac  uuuguu u
acg    a gu         a              a c    uc      g 


mirna_id: ath-MIR401
hairpin:
uauauagacccuaaaaacgucca     u       caa   u   a  c  c         -c     cuucu a     u  a    uuuag     -uugc g   C  AACU        C      - a 
                       gggac aauaaug   aua gga au uu uggggcaaa  uugag     g aaacu ga agcg     gguuu     u ggc GA    GGUGUCGA CGACAc c a
                       ||||| |||||||   ||| ||| || || |||||||||  |||||     | ||||| || ||||     |||||     | ||| ||    |||||||| |||||| |  
                       cccug uuguuac   uau ccu ug aa accucguuu  gauuc     c uuuga uu uugc     ccaag     a ucg cu    ucacagcu gcugug g g
------------aagauacguua     -       cuc   u   c  u  a         uu     cuuuu c     -  c    uaaaa     uccuu g   -  --ac        c      u a 


mirna_id: ath-MIR402
hairpin:
cguggua     -    -g   u            u   ccuuu     uuaacccauauuuuc           C    U           acaucu   -       --a    gucauuuuucugaaaucuucuugccucaauuuccaacagcagauucaucuu 
       gauaa guuu  agu gcauaguggcag cuu     guuug               augaUUCGAGG CUAU AAACCUCUGuu      gcu uuuugaa   aguu                                                   u
       ||||| ||||  ||| |||||||||||| |||     |||||               ||||||||||| |||| |||||||||||      ||| |||||||   ||||                                                   c
       cuauu caaa  uca cguaucaucguc gag     caaac               uacuaagcucc gaua uuuggggauaa      cga aaagcuu   ucag                                                   a
----aaa     u    ag   u            u   -----     -------------ua           a    -           aauuuc   u       cag    aauuaaagaaggguggaguaaaaaagauaguuuuugauugccuaguagguu 


mirna_id: ath-MIR403
hairpin:
uugucauuaga    u  u     au    u    u                ggcuuuauguaagagauucu 
           agag cg auuac  guuu gugc ugaaucuaauucaaca                    u
           |||| || |||||  |||| |||| ||||||||||||||||                    u
           uuuc gu uaauG  CAAA CACG ACUUAGAUUagguugu                    a
-----------    u  c     CU    -    C                uguuucuaauauccuuaaca 


mirna_id: ath-MIR404
hairpin:
uagca  -uu  uuu  UUAAC   G                           gug       a  cu  -c    g 
     ug   cg   cA     GCU GCGGUUGCGGCAGCggcugcgguagcg   gcggcaa ca  ac  gcag u
     ||   ||   ||     ||| |||||||||||||||||||||||||||   ||||||| ||  ||  ||||  
     gc   gc   gu     ugg cgccaacgccgucgccgacgccgucgc   cgccguu gu  ug  uguu u
--gca  uuu  -uu  uucuu   a                           aga       -  uu  cu    g 


mirna_id: ath-MIR405a
hairpin:
uca      g       --acc    c       uaa        guuuaugauua               -              u 
   aaaugg uaaccca     caac caacuca   ucaaauga           aaugaguuauggguu gacccaacucauuu g
   |||||| |||||||     |||| |||||||   ||||||||           ||||||||||||||| ||||||||||||||  
   uuuacc auugggu     guug guugggu   aguuuacu           uuacUCAAUACCCAA CUGGGUUGAGUAaa u
--a      a       aaauu    a       ---        -----------               U              u 


mirna_id: ath-MIR405b
hairpin:
uuaacccauuuaaca     accc         -----------                              a 
               auuca    aucaaauga           aaugaguuauggguuagacccaacucauuu a
               |||||    |||||||||           ||||||||||||||||||||||||||||||  
               ugagu    uaguuuacu           uuacUCAAUACCCAAUCUGGGUUGAGUAaa c
---------------     --au         caaauauuaau                              a 


mirna_id: ath-MIR405d
hairpin:
acccaucaa    ---               -              u 
         auga   aaugaguuauggguu gacccaacucauuu g
         ||||   ||||||||||||||| ||||||||||||||  
         uacu   uuacUCAAUACCCAA CUGGGUUGAGUAaa u
------aaa    aau               U              u 


mirna_id: ath-MIR406
hairpin:
uaaa    uaa          uca      agcacauaucaau    --       a     c    auuaguucuuaaa          agacaguaacuauucaaaUAGAAUG 
    gucu   uuuuuaguua   cgauuu             cuau  agauuug uuuuu uuuu             uuuugauuug                         C
    ||||   ||||||||||   ||||||             ||||  ||||||| ||||| ||||             ||||||||||                          
    uagg   aaaaaucaau   gcuaaa             gaua  ucugagc aaaaa aaaa             aaaacuaagc                         U
--gg    ---          -ua      ----------aau    cu       -     a    -------------          aaagaaagccuaaGACCUAAUGUUA 


mirna_id: ath-MIR407
hairpin:
---                     c         u          caa                         a   A                    c    cc            a       a  c  a 
   ugggaaaaauguuaaaaaaau gccaacuuu aaaaauggga   aaaaaucgccaacuccugaaauguc UUU AAUCAUAUACUUUUGGUuga uuuu  agaaagauaaua agcaaag uu gu a
   ||||||||||||||||||||| ||||||||| ||||||||||   ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||  |||||||||||| ||||||| || || u
   accuuuuuuacaguuuuuuua cgguugaaa uuuuuacccu   uuuuuagugguugaggacuuuacag aaa uuaguguaugaaaacuaacu aaga  ucuuucuauugu ucguuuc aa ca c
gua                     a         c          -ac                         c   a                    c    aa            c       a  a  a 


mirna_id: ath-MIR408
hairpin:
aag     auu    uu         --gaagac     --g u     ---        --------------------------       caa    a      auu   uuuac       uuaa 
   guuag   ggua  gcaaugaaa        aaagc   g aauga   gagagaga                          cagggaa   gcag gcaugg   gag     uaaaaca    a
   |||||   ||||  |||||||||        |||||   | |||||   ||||||||                          |||||||   |||| ||||||   |||     |||||||    c
   caauc   ucau  cguuauuuu        uuucg   c uuacu   cucucucu                          GUCCCUU   CGUC CGUAcc   cuc     guuuugu    g
--g     --g    --         aagguaac     aca u     uuc        cuuuauaucucuuuuuuucucccuCG       CUC    A      cau   ----u       cuca 


mirna_id: ath-MIR156g
hairpin:
auaacga   C    -               a  u    cuuu   u     g 
       agg GACA GAAGAGAGUGAGCAC ca ggcu    uuc agcau c
       ||| |||| ||||||||||||||| || ||||    ||| |||||  
       ucc cugu cuucucucauucgug gu ucga    aag ucgua u
ucucucg   u    u               c  c    ----   c     c 


mirna_id: ath-MIR156h
hairpin:
augaaaa   u  A      -            -a     g uua      ag 
       aug UG CAGAAG AAAGAGAGCACa  ccugg a   gcaaaa  a
       ||| || |||||| ||||||||||||  ||||| |   ||||||   
       uac ac gucuuc uuucucucgugu  gggcu u   cguuuu  u
gcguuac   c  c      c            ga     g ucc      ga 


mirna_id: ath-MIR158b
hairpin:
   u u   cuu           cu     -a     ug   a 
auc c gug   cuuugucuaca  uuugg  aaagg  aug u
||| | |||   |||||||||||  |||||  |||||  |||  
uag g cau   GAAACAGAUGU  AAACC  uuuuc  uac a
   u c   aAC           --     CC     gu   u 


mirna_id: ath-MIR159c
hairpin:
guguaac                -c      a         ---caa   ---uu      cuaaaau c            u  a   cu     a     a    gcggug    a 
       agaaggagcucccuuc  uccaaa cgaagagga      gau     gaggaa       g agaaucuaagag uc ugu  uccuc uagag gugc      uuaa a
       ||||||||||||||||  |||||| |||||||||      |||     ||||||       | |||||||||||| || |||  ||||| ||||| ||||      ||||  
       uuuUCCUCGAGGGAAG  AGGUUU gcuucucuu      cua     cucuuu       c ucuuagauucuc ag acg  agggg auuuc cacg      aguu g
cuucuuc                UU      -         cucuua   uacau      ---cucc -            c  c   uu     a     a    -aaaga    c 


mirna_id: ath-MIR319c
hairpin:
    uau        a              u        gaaa      a gg           g   ac    c  uc  aa    c     ag   aac 
uaga   agaaggag uucuuucaguccag cauggaua    aagaag g  uagaaauaucu ccg  ucau ca  ca  cacu guggu  aga   g
||||   |||||||| |||||||||||||| ||||||||    |||||| |  ||||||||||| |||  |||| ||  ||  |||| |||||  |||   a
aucu   ucUUCCUC AGGGAAGUCAGGUU gugucuau    uucuuc c  guuuuuauaga ggc  agua gu  gu  guga cgcca  uuu   u
    uuu        G              u        ----      - ua           g   gu    a  gu  ca    -     aa   aaa 


mirna_id: ath-MIR164c
hairpin:
ua    u  a     A  C              cacaaaugaaaucgauc 
  acac ug UGGAG AG AGGGCACGUGCGaa                 g
  |||| || ||||| || ||||||||||||||                  
  ugug ac accuc uc ucuugugcacgcuu                 g
uc    c  a     a  a              uuauacuaguuguucau 


mirna_id: ath-MIR167c
hairpin:
c  g      -uU                  U    uc       ---     ----       uaguuaauaaauauuuuau 
 ca uagcag   AAGCUGCCAGCAUGAUCU Gucu  cucucuu   agguu    ucauaua                   a
 || ||||||   |||||||||||||||||| ||||  |||||||   |||||    |||||||                   u
 gu aucguc   uuugauggucguacugga caga  gagagag   uucga    aguauau                   a
-  a      cac                  u    ga       aga     uacu       uagaacauucuuguucuuu 


mirna_id: ath-MIR172e
hairpin:
guaguc  a         c           a  aga    u  uu     ---   -uu   c 
      gc gaugcagca cauuaagauuc ca   gaug gg  cccuu   ugc   ucg c
      || ||||||||| ||||||||||| ||   |||| ||  |||||   |||   ||| u
      cg cUACGUCGU GUAGUUCUAAG gu   cuau cc  gggaa   acg   agc c
cauaaa  a         A           G  gag    u  uu     aag   ccu   u 


mirna_id: osa-MIR156k
hairpin:
uu  ga ug        -   -G          --a   -     c      ga 
  ga  g  aUGACAGA AGA  AGAGAGCACA   ccc ggcag agcgac  c
  ||  |  |||||||| |||  ||||||||||   ||| ||||| ||||||  g
  cu  c  uacugucu ucu  ucucucgugu   ggg ccguc ucgcug  g
ac  gc gu        a   ag          gcc   a     u      gc 


mirna_id: osa-MIR156l
hairpin:
gcuaggga  C       -    -               ucu   cuu       u g  -----------           gac 
        gc GACAGAA GAGA GUGAGCAUAuauagu   uuc   gcauaug g uc           auauguguguu   u
        || ||||||| |||| |||||||||||||||   |||   ||||||| | ||           |||||||||||   g
        CG CUGUCUU CUCU CACUCGuguauaucg   aag   cguguac u ag           uauauacauag   a
cuauuaaa  A       U    U               ---   -uu       u g  agagagagaua           aga 


mirna_id: osa-MIR159a
hairpin:
guugu   c  u                  aa     u   gc   -    c   ug    g     u    g uc    u      cu   uguucaucauucagcucgagaucugaaagaaacuacuccaauuua 
     gga gu gagcuccuuucgguccaa  agggg guu  ugu gggu gau  agcu cuggg caug a  ccgu agccua  cca                                             u
     ||| || ||||||||||||||||||  ||||| |||  ||| |||| |||  |||| ||||| |||| |  |||| ||||||  |||                                              
     ucu cG CUCGAGGGAAGUUAGGUU  Ucucc cag  aca ccca cuA  UCGA GACCC GUAC U  ggua ucggau  ggu                                             a
uguuu   a  U                  --     -   gu   u    a   CG    G     C    G Uc    u      ag   uguugcucaugagguaguaaaaggauagauguguguaugauaauc 


mirna_id: osa-MIR159b
hairpin:
     u  a ug            u     u  aa    uaucug    -  -   a a   g    u     guuc    uau        aua 
gguua ga g  gagcuccuuucg uccaa ga  gguu      aagg gu gau c gcu cuug ucaug    ccac   ucuaucuc   g
||||| || |  |||||||||||| ||||| ||  ||||      |||| || ||| | ||| |||| |||||    ||||   ||||||||   g
cuagu cu c  CUCGAGGGAAGU AGGUU cu  ccag      uucc ca cua g cga gaac aguac    ggug   ggauagag   a
     u  a GU            U     U  ca    ---ucg    u  a   a c   g    c     guuu    uuc        aaa 


mirna_id: osa-MIR159c
hairpin:
   ga   a a                    u   g        ----    a  aug  g  g   au     g u    c  -       u   -a   a 
gag  gga g ggagcuccuuucgauccaau cag agaggaag    uggu gg   ca cu ccg  ucaug a accu ug gagugca ggc  gca u
|||  ||| | |||||||||||||||||||| ||| ||||||||    |||| ||   || || |||  ||||| | |||| || ||||||| |||  |||  
cuc  ucu c CCUCGAGGGAAGUUAGGUUA guu ucuccuuc    acca cc   gu ga ggc  aguac u uggg ac uucacgu ccg  ugu g
   uc   a A                    -   a        uguu    c  -aa  a  g   cc     g u    u  g       -   ga   c 


mirna_id: osa-MIR159d
hairpin:
ugau   -  ga                    u   g       ----    ug  aug  g  g    u     g u    c    -  u  u   g 
    gug ag  ggagcuccuuucgauccaau cag agaggaa    gugg  gg   ca cu ccgg ucaug a accu ugca gu ca gcc g
    ||| ||  |||||||||||||||||||| ||| |||||||    ||||  ||   || || |||| ||||| | |||| |||| || || |||  
    cac uc  CCUCGAGGGAAGUUAGGUUA guu ucuccuu    uacc  cc   gu ga gguc aguac u uggg acgu ca gu cgg u
-auc   a  gG                    -   a       gugu    gu  -aa  a  g    c     g u    u    u  c  c   a 


mirna_id: osa-MIR159e
hairpin:
g   a  -a   a          u         u   g        ----   ua  aug  g  g   gu     g u    c    - u c     a 
 aug ag  aga gagcucccuu cgauccaau cag agaggaag    ugg  gg   ca cu ccg  ucaug a accu ugga g g agggc a
 ||| ||  ||| |||||||||| ||||||||| ||| ||||||||    |||  ||   || || |||  ||||| | |||| |||| | | ||||| a
 uac uc  ucU CUCGAGGGAA GUUAGGUUA guu ucuccuuc    acc  cc   gu ga ggc  aguac u uggg acuu c c uccug u
-   a  ga   C          -         -   a        uguu   gc  -aa  a  g   uc     g u    u    u c a     a 


mirna_id: osa-MIR159f
hairpin:
gaagaagaagac                  uc  g         ----    a  aug  g  g    u     g u    c    -     u  c 
            gagcucccuucgauccaa  ca gagaggaag    uggu gg   ca cu ccgg ucaug a accu ugca gugca gu g
            ||||||||||||||||||  || |||||||||    |||| ||   || || |||| ||||| | |||| |||| ||||| || u
            CUCGAGGGAAGUUAGGUU  gu uucuccuuc    acca cc   gu ga ggcc aguac u uggg acgu cacgu cg a
cucucuccacAU                  -C  a         uguu    c  -aa  a  g    c     g u    u    u     u  g 


mirna_id: osa-MIR319a
hairpin:
---  u     aa a    u            cu u        u        --uua      G   AA       U  Ac         aagu    g 
   ug guaag  g gagc cucuucagucca  c cagauggc guaggguu     uuAGCU CCG  UCAUCCA UC  cuaccaaga    ugca g
   || |||||  | |||| ||||||||||||  | |||||||| ||||||||     |||||| |||  ||||||| ||  |||||||||    ||||  
   ac cguuC  C CUCG GGGAAGUCAGGU  g guuugccg cgucucga     AAUCGA GGC  AGUAGGU Ag  gaugguucu    augu a
cga  u     -- -    U            Ug u        -        uuuaa      G   GC       C  gc         --cu    g 


mirna_id: osa-MIR319b
hairpin:
--  u   u   a a    gu           cu  u         ua      -   --  g  g   ac        c  ca   c    aagaaa    ug 
  ga gga gga g gagc  ccuucagucca  ca gggcggugc  gggucg aau  ua cu ccg  ucauucac ca  ugc aagc      cgcu  a
  || ||| ||| | ||||  |||||||||||  || |||||||||  |||||| |||  || || |||  |||||||| ||  ||| ||||      ||||   
  cu ccu ccu C CUCG  GGAAGUCAGGU  gu ucugccgcg  ucuagc uug  au ga ggc  aguaagug gu  acg uucg      gcga  g
ag  -   -   C -    UG           Uc  u         -c      c   ca  g  g   ga        a  ag   a    ----aa    ua 


mirna_id: osa-MIR160e
hairpin:
gua    a     C    U  C         cu    ug  u      cc     acu 
   gggg uaUGC UGGC CC UGUAUGCCG  cgca  gc gccaac  aauga   c
   |||| ||||| |||| || |||||||||  ||||  || ||||||  |||||    
   uccc GUACG ACCG GG GCGUGCGgc  gcgu  cg cgguug  uugcu   g
uuc    g     A    U  A         au    --  c      --     cua 


mirna_id: osa-MIR160f
hairpin:
-  auu   g    C         G       u   a      u    - u 
 gg   aac cUGC UGGCUCCCU AAUGCCA ccg gaagcg gccg c g
 ||   ||| |||| ||||||||| ||||||| ||| |||||| |||| |  
 uc   uug GACG ACUGAGGGA UUACGgu ggu cuucgu cggc g u
c  -gu   G    U         G       u   c      -    c g 


mirna_id: osa-MIR162b
hairpin:
u      ugc    gc    u            uc    c   c     -cugc  --c     au  c 
 ggguga   cugg  gcag gguuuaucgauc  uucc ugc uugug     uc   gaucg  gc c
 ||||||   ||||  |||| ||||||||||||  |||| ||| |||||     ||   |||||  ||  
 uucacu   GACC  CGUC CCGAAUAGCUag  aagg acg aacau     ag   uuagu  cg g
u      cua    UA    U            cu    -   c     auaau  uuc     --  u 


mirna_id: osa-MIR164c
hairpin:
-     cu  u        CA           aaaugca    --     g  -     aau 
 agguu  ug UGGAGAAG  GGGUACGUGCA       cacc  gguug uc gagcu   u
 |||||  || ||||||||  |||||||||||       ||||  ||||| || |||||    
 uccgg  ac accucuuc  cucgugcacgu       gugg  ccagc ag cucga   a
u     -u  c        cc           -aagcua    ua     -  u     aca 


mirna_id: osa-MIR164d
hairpin:
caaa              C  G         cgacg     g      g 
    ccgugcUGGAGAAG AG GCACGUGCU     gcggg cuggcu g
    |||||||||||||| || |||||||||     ||||| ||||||  
    gguacgaccucuuc uc cguguacga     cguuc ggccgg c
cuuc              c  g         -----     -      c 


mirna_id: osa-MIR164e
hairpin:
uu    ag          CA                     guguagcuucgcugcgcguccaug 
  gugc  ggUGGAGAAG  GGGCACGUGAGcggccaucca                        g
  ||||  ||||||||||  |||||||||||||||||||||                         
  cacg  ccaccucuuc  ccuguguacuugcugguaggu                        c
gu    ag          ug                     uugaggucuagugcgcgcaagcgg 


mirna_id: osa-MIR166j
hairpin:
agaua     uu      C          A            -------      -g  -      --a       u 
     ggugu  ggAAUG AGUUUGAUCC AGAUCugccuau       auauau  gu guguau   ucauauc u
     |||||  |||||| |||||||||| ||||||||||||       ||||||  || ||||||   |||||||  
     ccaca  CCUUAC UCGGACUAGG Ucuagauggaug       ugugug  ca cguaua   gguauag g
-----     CU      U          C            gggacag      ga  a      ggg       u 


mirna_id: osa-MIR166k
hairpin:
auua          U   UU      CU      a      acuccgguuucuccuuuccuac 
    gguuaaggGG UUG  GUCUGG  CGAGGc uccggg                      u
    |||||||||| |||  ||||||  |||||| ||||||                       
    ccaauuUCCC AAC  CGGACC  GCUccg aggcuc                      g
cgua          U   UU      AG      -      gagcggccuuuaauccgcggag 


mirna_id: osa-MIR166l
hairpin:
-   a              UU         A     u   --   --     -aaa   uu 
 guu gguuaaggGGAUUG  GUCUGGUUC AGGuc cca  cau  ugugc    aug  c
 ||| ||||||||||||||  ||||||||| ||||| |||  |||  |||||    |||   
 cga ccaauuUCCCUAAC  CGGACCAGG Ucuag ggu  gua  acacg    uac  a
a   -              UU         C     u   uc   gg     gagg   uu 


mirna_id: osa-MIR167d
hairpin:
   u  g  c         -              gagugcuuauuaggugaggg 
cau ag ag UGAAGCUGC CAGCAUGAUCUGau                    c
||| || || ||||||||| ||||||||||||||                    a
gug uc uC ACUUUGACG GUCGUACUAGacua                    g
   u  g  U         U              gaaacaaaaccgucaguuaa 


mirna_id: osa-MIR167e
hairpin:
u        a         C             ugucaggcaugagccaaaucuauccaugguguuggugguacugaaauuaccgcguuuucgagguuuuucgucgugucaacuugcgaagggaauuacggguucu 
 gugagaga UGAAGCUGC AGCAUGAUCUGgu                                                                                                       u
 |||||||| ||||||||| |||||||||||||                                                                                                        
 cacucucU ACUUCGACG UUGUACUAGAcua                                                                                                       g
c        C         -             ccucgguuuaagguuagugaggguggagaaugacuuugaguguucuuguuaguauuaagauggagaugauugguucggguguggaggauagugguuacgagua 


mirna_id: osa-MIR167f
hairpin:
  ca  u               C          caca   gu       c ga  aug 
ca  ag ggaUGAAGCUGCCAG AUGAUCUGau    gua  ucucuag u  ug   a
||  || ||||||||||||||| ||||||||||    |||  ||||||| |  ||    
gu  uc ucuacuuugacgguc uacuagacua    cgu  agagauc a  ac   u
  ac  u               -          ----   ac       c aa  auu 


mirna_id: osa-MIR167g
hairpin:
   a  c             A C         aa  aucu 
cau ag aggUGAAGCUGCC G AUGAUCUGa  gc    c
||| || ||||||||||||| | |||||||||  ||    a
gua uc ucuacuucgacgg c uacuagacu  cg    a
   c  u             c -         ag  acca 


mirna_id: osa-MIR167h
hairpin:
c  a   u           C             ga    ga      -accucuc   ucug 
 ac agu ggUGAAGCUGC AGCAUGAUCUGau  ugau  ugaucc        uca    u
 || ||| ||||||||||| |||||||||||||  ||||  ||||||        |||     
 ug ucg CUACUUUGAUG UCGUACUGGAcua  gcua  acuagg        agu    g
u  g   u           -             --    --      cauuaauu   ucuu 


mirna_id: osa-MIR167i
hairpin:
u       gc         C              c     uugcacugcugaauauauugaauucagccaggagcugcuacugcaguucugaucucgauc 
 gugagag  UGAAGCUGC AGCAUGAUCUGguc augag                                                            u
 |||||||  ||||||||| |||||||||||||| |||||                                                             
 cacucuc  ACUUCGACG UUGUACUAGAcuag uacuu                                                            g
u       UC         -              c     uaauuucuguaccuacggaaguuuggcuaguuuagguauguaucgagucuuguugcuuac 


mirna_id: osa-MIR168a
hairpin:
  c   g gc             AU     C   cc   g   c 
cg cuc g  UCGCUUGGUGCAG  CGGGA ccg  gcc ccg u
|| ||| |  |||||||||||||  ||||| |||  ||| |||  
gc gag c  AGUGAACCACGUU  GCCCU Ggc  cgg ggc g
  c   g UA             CC     A   --   -   c 


mirna_id: osa-MIR168b
hairpin:
--u   cuu u    CU  G      U     Acu  ucu  a     -   c    
   ggu   g gAGG  UG UGCAGC CGGGA   gu   ug uggac ugg agg 
   |||   | ||||  || |||||| |||||   ||   || ||||| ||| || a
   ccg   c cucc  ac guguug guccu   cg   ac accug acc uca 
uug   -uu -    uu  g      u     cac  -uc  c     u   -    


mirna_id: osa-MIR169b
hairpin:
     ga   C         UG         uac    au     uu  aagguacuauaugu 
gaacg  aug AGCCAAGGA  ACUUGCCGG   gugu  gcaug  uc              g
|||||  ||| |||||||||  |||||||||   ||||  |||||  ||               
cuugu  ugc ucgguuccu  ugaacggcc   uaca  cguac  ag              c
     uc   a         gu         uuu    gu     cu  auuuugucaacccc 


mirna_id: osa-MIR169c
hairpin:
-gaac   a  C          -            ccuggua  g    aauc       
     ggg ug AGCCAAGGAU GACUUGCCGGcu       uu gggg    ucagcu 
     ||| || |||||||||| ||||||||||||       || ||||    ||||| u
     ucc ac ucgguuccug cugaacggccga       ag uucc    agucgu 
cucga   -  a          u            ----uug  g    gcga       


mirna_id: osa-MIR169d
hairpin:
auuuau         AA      A           -----------u     uguu 
      cgugUAGCC  GGAUGA UUGCCGGcguu            cacgc    g
      |||||||||  |||||| |||||||||||            |||||     
      guacaucgg  uuuacu aacggccgcgg            gugcg    a
ccguuu         ac      g           uugaauauauac     uggu 


mirna_id: osa-MIR169e
hairpin:
gcu      ---           ---           -  -  gu   --ugu    -  --     c    a 
   gguugu   gUAGCCAAGGA   UGACUUGCCGG cc ug  uug     ucau ca  gcaau cagc u
   ||||||   |||||||||||   ||||||||||| || ||  |||     |||| ||  ||||| ||||  
   ccaaca   caucgguuucu   auugaacggcc gg ac  agc     agug gu  cguua gucg a
---      uua           uuu           a  u  gu   uagcu    u  gc     u    u 


mirna_id: osa-MIR169f
hairpin:
g             -           A     -          U   U    UAaugccuaugugcauguguuuauacgcugcucaucugcauuuugauuauccccu 
 ggccuuccaUGAG GACAAGAGCUG UUCGG UAGCCAAGGA GAC UGCC                                                       g
 ||||||||||||| ||||||||||| ||||| |||||||||| ||| ||||                                                        
 ucggaaggugcuc cuguucucggc aggcu aucgguuccu cug acgg                                                       a
g             u           g     u          u   u    auauauacauacucaugucucaugauguguguguauauuaacugcuguccugacu 


mirna_id: osa-MIR169g
hairpin:
cu   u  --   -         U    U       -gu    u       g u  -  u     ga 
  gcc cu  ggU AGCCAAGGA GACU GCCUAuu   gcuc ucugaau a gc ag gccau  u
  ||| ||  ||| ||||||||| |||| |||||||   |||| ||||||| | || || |||||  c
  cgg ga  ccg ucgguuccu cuga cggauag   cgag agacuug u cg uc cggug  a
--   u  gu   a         -    -       agc    u       g -  g  -     ug 


mirna_id: osa-MIR169h
hairpin:
uua    u   -         U    U       -uc     g  u          aauuau 
   gcuc ggU AGCCAAGGA GACU GCCUGug   cuugu ug aaggaucauu      u
   |||| ||| ||||||||| |||| |||||||   ||||| || ||||||||||      a
   ugag ccg ucgguuccu cuga cggguac   ggacg ac uuccuaguaa      u
uag    u   a         -    -       uuu     -  u          aagacu 


mirna_id: osa-MIR169i
hairpin:
-ggaa    -     g  u     -            UA    U  -          U    U       uc  u  gua    a     c 
     gaga gcaag cu gcaUG GUGAUAAGGGUG  GCUC Gg UAGCCAAGGA GACU GCCUGug  cu gu   gagg ucauu a
     |||| ||||| || ||||| ||||||||||||  |||| || |||||||||| |||| |||||||  || ||   |||| ||||| g
     cucu cguuc ga uGUAC CACUAUUCUCGC  UGAG cu aucgguuccu cuga cggauac  gg ca   uucc aguaa a
aguug    a     g  u     U            --    U  g          -    -       uu  u  -ag    g     a 


mirna_id: osa-MIR169j
hairpin:
-    a  u   -         U    U       ucucug u         -u  a  -a   ug 
 ucgc uc ggU AGCCAAGGA GACU GCCUGug      c caugugcag  ag ag  aga  c
 |||| || ||| ||||||||| |||| |||||||      | |||||||||  || ||  |||   
 ggcg ag ccg ucgguuccu cuga cggacac      g guauacguc  uc uc  ucu  a
c    -  u   a         -    -       --ucua u         uu  g  ga   uu 


mirna_id: osa-MIR169k
hairpin:
u          -         U    U      -- gc   u  g    ag     u   uuaauuag    a   u ug     
 cugucuagaU AGCCAAGGA GACU GCCUGu  g  cuc ug agag  aggug agc        cagc ugg u  agca 
 |||||||||| ||||||||| |||| ||||||  |  ||| || ||||  ||||| |||        |||| ||| |  ||| u
 ggcgggucug ucgguuccu cuga cggaca  c  gag ac ucuc  uucgc ucg        guug gcu a  ucgu 
c          a         -    -      uu ua   u  g    -g     u   -----cua    -   - gu     


mirna_id: osa-MIR169l
hairpin:
uuau   -uga          U    U       -u  uc c          gca 
    cuc    UAGCCAAGGA GACU GCCUGug  cc  c ugaaggauua   a
    |||    |||||||||| |||| |||||||  ||  | ||||||||||   u
    gag    aucgguuccu cuga cggguac  gg  g auuuccuagu   u
-ggu   uccg          -    -       uu  uc a          aau 


mirna_id: osa-MIR169m
hairpin:
-ug  u  u   -         U    U        auuuau             u  gaucaauggauggau 
   ag cc ggU AGCCAAGGA GACU GCCUGuau      auauauaugugug gu               u
   || || ||| ||||||||| |||| ||||||||      ||||||||||||| ||               g
   uc gg ccg ucgguuccu cuga cggacaug      uauauauacguac cg               a
cca  -  c   a         -    -        ------             u  gacguucgucgaacu 


mirna_id: osa-MIR169n
hairpin:
cu  -       -         U    U        guuuu   u   guug  u        caucuaucagccguugcagauuugcagugg 
  cc cuuuggU AGCCAAGAA GACU GCCUAugu     gcc ugu    gc cauccauc                              c
  || ||||||| ||||||||| |||| ||||||||     ||| |||    || ||||||||                               
  gg gagaccg ucgguucuu cugg cggguacg     cgg gua    cg guagguag                              a
-c  u       a         -    c        ----u   u   ---a  u        uguucuuaaagaaagacuuugggaaauuag 


mirna_id: osa-MIR169o
hairpin:
cu  -       -         U    U     c  uuuu   c  uguug  u     -   cgucuaucuaucugccauggcagauggc 
  cc cuuuggU AGCCAAGAA GACU GCCUA gc    gcc uc     gc caucc auc                            a
  || ||||||| ||||||||| |||| ||||| ||    ||| ||     || ||||| |||                             
  gg gagaccg ucgguucuu cugg cgggu cg    cgg ag     cg guagg uag                            g
-c  u       a         -    c     a  ---u   -  --uaa  u     a   uguucuuaaagaaagucuuugggaauua 


mirna_id: osa-MIR169p
hairpin:
     a              CAA         aucaacagagaaggacugccagucuccggc 
gagca ggugUAGCCAAGGA   ACUUGCCGG                              c
||||| ||||||||||||||   |||||||||                              a
cucgu cuacgucgguuccu   ugaacggcc                              a
     c              -ac         ggccgcuaccggcugccgcuccaauuaauu 


mirna_id: osa-MIR169q
hairpin:
-cca   a  c          -    -   CA  aa  ag   a      ---  uu 
    cuc gg UAGCCAAGGA GACU GCC  UG  cc  cuu aaggau   ca  a
    ||| || |||||||||| |||| |||  ||  ||  ||| ||||||   ||   
    gag cu aucgguuccu cuga cgg  ac  gg  gga uuccua   gu  a
aaua   a  -          a    a   ac  -a  ag   c      auc  ua 


mirna_id: osa-MIR171b
hairpin:
---      acgg        g               -  cuu u     gga 
   gcgacg    gauauugg gcgguucaaucagaa ag   g gcucc   a
   ||||||    |||||||| ||||||||||||||| ||   | |||||    
   cgcugc    CUAUAACC UGCCGAGUUAGUuuu uc   c cgagg   g
cua      ---a        G               c  -au u     agc 


mirna_id: osa-MIR171c
hairpin:
gu  ga   G        UG             a  cuu u     gaa 
  gg  acg GAUAUUGG  CGGUUCAAUCaga ag   g gcucc   g
  ||  ||| ||||||||  ||||||||||||| ||   | |||||    
  cc  ugc CUAUAACC  GCCGAGUUAGUuu uc   c cgggg   g
uu  gc   a        GU             c  -ac u     agc 


mirna_id: osa-MIR171d
hairpin:
uugua   au         C       C     ----------    u   c g    -ga   g     ga 
     gcu  gaUGUUGGC CGGCUCA UCAGA          ugga cau g ugca   aga ugcau  a
     |||  ||||||||| ||||||| |||||          |||| ||| | ||||   ||| |||||  u
     cga  CUAUAACCG GCCGAGU AGUcu          accu gua u augu   ucu acgua  c
uacca   cu         U       U     ucaaggucgu    c   - g    gac   g     gu 


mirna_id: osa-MIR171e
hairpin:
-u    g   u         U       C     c     uggc    u  ---a       c 
  ggua cua gaUGUUGGC CGGCUCA UCAGA ggcau    guga gc    aagcaug a
  |||| ||| ||||||||| ||||||| ||||| |||||    |||| ||    |||||||  
  ucgu gau CUAUAACCG GCCGAGU AGUcu uugug    cacu cg    uucgugc u
uc    -   u         U       U     -     --uu    -  aucg       g 


mirna_id: osa-MIR171f
hairpin:
 g   ag  c                     A          c      acuagcuaagcaa 
g gag  ug gaUGUUGGCAUGGUUCAAUCA Accgggcaaa uuaugc             g
| |||  || ||||||||||||||||||||| |||||||||| ||||||             a
c uuc  ac CUAUAACCGUGCCGAGUUAGU ugguuuguuu gguaug             u
 g   ga  a                     c          u      acguauagggacg 


mirna_id: osa-MIR171g
hairpin:
       ca        a             agcaa    aaa   c 
gacaugg  ugguauug cuuggcucaucuc     cagc   cug a
|||||||  |||||||| |||||||||||||     ||||   |||  
cuguacu  aCUAUAAC GAGCCGAGUGGAG     gucg   gac u
       uc        C             -----    --c   g 


mirna_id: osa-MIR172a
hairpin:
g         gc ug               a  u   ---------------   auauau 
 uguuugcgg  g  gcaucaucaagauuc ca cca               ugc      c
 |||||||||  |  ||||||||||||||| || |||               |||       
 acagacgcc  C  CGUAGUAGUUCUAAG gu ggu               acg      a
a         UA GU               A  c   uuagccuacauauac   cagaac 


mirna_id: osa-MIR172b
hairpin:
g          c ug               --      uacau       augcauaugucuaugcaucuuugagcuuguuguucugaucucaacaaccuagcuagcuaauauuucucu 
 ugauuucuga g  gcaucaucaagauuc  acacau     ugcaugc                                                                     c
 |||||||||| |  |||||||||||||||  ||||||     |||||||                                                                      
 auuaaaggcU C  CGUAGUAGUUCUAAG  ugugua     guguacg                                                                     c
a          A GU               Gg      uauau       caaauuaaucgaagcuagagagagaagagagagguacgcacguugguacguaguacguccagucccggu 


mirna_id: osa-MIR172c
hairpin:
   g    g                         gugccgcacggcacacguau 
cuu uugc ggugcagcgucaucaagauucacgu                    c
||| |||| |||||||||||||||||||||||||                    g
gag aacg cCACGUCGUAGUAGUUCUAAGUgcg                    g
   a    a                         ugcuacugaugugaacuuuu 


mirna_id: osa-MIR166g
hairpin:
          cu         G   A   A     auugcuuggugcaaaauacuagggcauuguuguaag 
agcauggugu  ggAAUGGAG CUG UCC AGAUC                                    u
||||||||||  ||||||||| ||| ||| |||||                                    g
ucgugccaca  CCUUACUUC GAC AGG Ucuag                                    c
          CU         G   C   C     gagcuauuguuugagccuuuguuuuuucuugauuac 


mirna_id: osa-MIR166h
hairpin:
gg                UU G    CU   G  a       cuuaau   ucu     ga 
  uggcuuguggGGAAUG  G CUGG  CGA Gu uccacau      ucc   ccggc  u
  ||||||||||||||||  | ||||  ||| || |||||||      |||   |||||   
  gccgaacgCUCCUUAC  C GACC  GCU cg aggugug      ggg   ggccg  c
ua                UU G    AG   g  a       -----c   cuc     ag 


mirna_id: osa-MIR166i
hairpin:
agaua     uu      C          A            -------      -g  -      --a       u 
     ggugu  ggAAUG AGUUUGAUCC AGAUCugccuau       auauau  gu guguau   ucauauc u
     |||||  |||||| |||||||||| ||||||||||||       ||||||  || ||||||   |||||||  
     ccaca  CCUUAC UCGGACUAGG Ucuagauggaug       ugugug  ca cguaua   gguauag g
cauaa     CU      U          C            gggacag      ga  a      ggg       u 


mirna_id: hsa-mir-384
hairpin:
u    aau    a   uua       c   -----   aa    uau 
 guua   cagg auu   aacaauu cua     gac  uaug   a
 ||||   |||| |||   ||||||| |||     |||  ||||   a
 caau   gucc uaA   UUGUUAA GAU     cug  auac   u
a    ---    g   UAC       A   CCUUA   -a    uug 


mirna_id: mmu-mir-384
hairpin:
u    aau    a     A       C     C    -Ug   aa 
 guua   cagg auUGU AACAAUU CUAGG AAUG   uau  u
 ||||   |||| ||||| ||||||| ||||| ||||   |||  g
 caau   gucc UAACA UUGUUAA GAUCC UUAc   aug  u
a    ---    g     C       A     -    uga   gu 


mirna_id: osa-MIR171h
hairpin:
----------a   -      g      uu        u             guu 
           gaa gaagag acaugg  ugguauug uucggcucauguc   c
           ||| |||||| ||||||  |||||||| |||||||||||||   a
           cuu cuucuu uguacU  ACUAUAAC AAGCCGAGUGuag   c
ucuucaagaga   a      a      -C        C             aca 


mirna_id: osa-MIR393b
hairpin:
ucggccugaggaaacua u      c           C         U gc  -  -ua  -   a       cc 
                 g ggagga UCCAAAGGGAU GCAUUGAUC g  ua gc   uc ucg ucgaucg  u
                 | |||||| ||||||||||| ||||||||| |  || ||   || ||| |||||||   
                 c ccuuuU AGGUUUCCCUA CGUGACUag c  gu cg   ag agc agcuagc  c
---------------uu u      A           A         - ua  g  ugc  c   -       ua 


mirna_id: osa-MIR408
hairpin:
------------gggaguucugugauuggagaggagaggaga      U       A   U    u     uau      auguagauuauuccuugcacaagagaugauga 
                                          CAGGGA GAGGCAG GCA GGga ggggc   caacag                                u
                                          |||||| ||||||| ||| |||| |||||   ||||||                                 
                                          GUCCCU CUCCGUC CGU cccu ccucg   guuguu                                g
ugugucucucucucucucucucucucuccacacguccccuCG      U       A   C    c     -uu      guggucgguagagagucuugaguaagugucga 


mirna_id: hsa-mir-196b
hairpin:
--     uc      uU       U  C           ucca 
  acugg  ggugau  AGGUAGU UC UGUUGUUGGGa    c
  |||||  ||||||  ||||||| || |||||||||||     
  ugacu  ucauua  UCCGUCA AG ACGACAGCUcu    c
gu     --      CU       C  C           cuuu 


mirna_id: mmu-mir-196b
hairpin:
-      uc      uU       U  C           ucca 
 aacugg  ggugau  AGGUAGU UC UGUUGUUGGGa    c
 ||||||  ||||||  ||||||| || |||||||||||     
 uugacu  ucauua  UCCGUCA AG ACGACAGCUcu    c
g      --      CU       C  C           cuuu 


mirna_id: rno-mir-196b
hairpin:
-      uc      uU       U  C           ucca 
 aacugg  ggugau  AGGUAGU UC UGUUGUUGGGa    c
 ||||||  ||||||  ||||||| || |||||||||||     
 uugacu  ucauuA  UCCGUCA AG ACGACAGCUcu    c
g      --      CU       C  C           cuuu 


mirna_id: osa-MIR172d
hairpin:
aaac     -   c    a         C           A     -----   u  u  cuaaa  a 
    agucg gug uugc gguGCAGCA CAUCAAGAUUC Caucg     agu ca cc     cg g
    ||||| ||| |||| ||||||||| ||||||||||| |||||     ||| || ||     ||  
    ucagc cgc aacg cUACGUCGU GUAGUUCUAAG guagu     uca gu gg     gc a
-uca     u   a    a         A           A     guaua   -  c  uugga  u 


mirna_id: osa-MIR171i
hairpin:
----uaaaa               C          -           auuacag  ac  c  c 
         agAGGUAUUGGCGUG CUCAAUCcga aggcauggcug       gc  cu ga c
         ||||||||||||||| |||||||||| |||||||||||       ||  || ||  
         ucuCUAUAACUGCGC GAGUUAGGuu uuuguaccgac       cg  ga cu g
cuucguucc               C          c           ----gua  -c  u  a 


mirna_id: osa-MIR167j
hairpin:
---- ug ga   -     - cu a     c         -             -    uu c  u   --uu        ugaa 
    u  u  ugu gugca c  u agcag UGAAGCUGC CAGCAUGAUCUGa ucuu  g ga cuc    uuuuuauc    u
    |  |  ||| ||||| |  | ||||| ||||||||| ||||||||||||| ||||  | || |||    ||||||||     
    a  g  aca cacgu g  a ucguc acuuugacg gucgugcuagacu agaa  c cu ggg    aaagguag    a
uuua gu uc   u     a cu a     u         c             u    -u -  u   uuau        uuga 


mirna_id: osa-MIR166m
hairpin:
cuc     u      ----ug  u      cuc          uu  uu         a   ---  u  u   guccuacaucacauuuuuuuuucuuuguucu 
   ugcuu gguggu      gc gauguu   gguuaagggg  ug  gucugguuc agg   cc cc gcu                               g
   ||||| ||||||      || ||||||   ||||||||||  ||  ||||||||| |||   || || |||                               a
   acgga cuacca      cg uuacga   ccaauuUCCC  AC  CGGACCAGG Ucc   gg gg cgg                               a
--u     -      uaauug  u      ---          UU  UU         C   agu  u  u   uacguaguacguguguguguagguagucuuu 


mirna_id: osa-MIR166n
hairpin:
-uga       cu    a a       C   C         A        c 
    uccaugg  guug g gGAAUGA GUC GGUCUGAAG ucgccguc c
    |||||||  |||| | ||||||| ||| ||||||||| ||||||||  
    agguacu  cagu C CCUUACU CGG CCAGGCUuc gguggcgg c
ccca       --    a C       U   A         -        a 


mirna_id: osa-MIR164f
hairpin:
----  ag au         c   a          C               cua a  uuc    -     cc    cg            cacuc   -     - c  c 
    ug  g  ggcgaggcg gcg ggUGGAGAAG AGGGCACGUGCAuuc   g gc   cguc cagcu  ccgg  ggcuagcuagcu     cgc cgccg c gc g
    ||  |  ||||||||| ||| |||||||||| |||||||||||||||   | ||   |||| |||||  ||||  ||||||||||||     ||| ||||| | ||  
    ac  c  ccgcuccgc cgu ccaccucuuc ucccguguacguagg   c cg   guag gucgg  ggcc  ucggucggucgg     gcg gcggc g cg c
agga  ga gu         a   g          u               --- a  uac    a     cc    --            --cac   c     c c  c 


mirna_id: mmu-mir-409
hairpin:
u     u       A    AC         -    - AUc 
 gguac cggagag GGUU  CCGAGCAAC UUUG C   u
 ||||| ||||||| ||||  ||||||||| |||| |    
 cuaug gcuuuUC CCAA  GGCUCGUUG AAGc g   g
a     -       C    GU         U    a gag 


mirna_id: mmu-mir-410
hairpin:
g    c       g    UG      A  A     - uuu 
 ggua uugagga AGGU  UCUGUG UG GUUCG c   a
 |||| ||||||| ||||  |||||| || ||||| |   u
 ccau aacuuuU UCCG  AGACAC AU UAAgc g   u
a    -       G    GU      A  A     a uaa 


mirna_id: mmu-mir-376b
hairpin:
u      u           A     U         cgug  u 
 gguauu aaaagGUGGAU UUCCU CUAUGGUUA    cu c
 |||||| ||||||||||| ||||| |||||||||    ||  
 cuauga uuuUUCACCUA AAGGA GAUACUAau    gg c
a      c           C     -         ---a  u 


mirna_id: mmu-mir-411
hairpin:
u      ug   a a    A      A A       - uuu 
 gguacu  gag g UAGU GACCGU U GCGUACG c   a
 ||||||  ||| | |||| |||||| | ||||||| |   u
 cuauga  cuc C AUCA CUGGCA A UGUAUgc g   c
a      --   C A    C      C A       a ugu 


mirna_id: mmu-mir-412
hairpin:
      g g    a    C      C   AA    -    u 
ggguau g acgg UGGU GACCAG UGG  AGUA AUug u
|||||| | |||| |||| |||||| |||  |||| ||||  
cccgug c uGCC AUCA CUGGUC ACU  Ucau uaau u
      g -    G    C      C   --    g    c 


mirna_id: mmu-mir-370
hairpin:
       g         CA GU   U    U   a  g 
agacgga agacCAGGU  C  CUC GCAG Uac ca c
||||||| |||||||||  |  ||| |||| ||| || u
ucugucu uuUGGUCCA  G  GGG CGUC Gug gu c
       g         AG UG   U    C   a  a 


mirna_id: gga-mir-29a
hairpin:
a    uu agagg            uuu       c    ucaa 
 cccc  u     augacugauuuc   ugguguu agag    u
 ||||  |     ||||||||||||   ||||||| ||||    a
 gggg  a     uaUUGGCUAAAG   ACCACGA Ucuu    a
a    uu -guga            UUU       -    uuau 


mirna_id: gga-mir-29b-1
hairpin:
    -     -          u      gu      uuaac 
ccuc aggaa gcugguuuca auggug  uuagau     u
|||| ||||| |||||||||| ||||||  ||||||     a
ggag uucUU UGACUAAAGU UACCAC  GAUcug     u
    g     G          U      --      uuacu 


mirna_id: gga-let-7i
hairpin:
c    U                 U   --------  u     ugu 
 uggc GAGGUAGUAGUUUGUGC GUu        gg cgggu   g
 |||| ||||||||||||||||| |||        || |||||   a
 aucg uuccgucaucgaacgcg caa        uc gcccg   c
-    -                 u   uagaggug  -     uua 


mirna_id: gga-mir-135a-2
hairpin:
a   aaa     ucua                U            u g a 
 gau   uucac    guguuuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    |||||||||||||||| |||||||||||| | | u
 cua   aagug    cauaaaguaccgaagg uagggauguacu u a a
a   -aa     -uua                -            c g a 


mirna_id: gga-mir-33
hairpin:
     G          UU         --g   u 
cugua UGCAUUGUAG  GCAUUGCau   ugc g
||||| ||||||||||  |||||||||   ||| g
gacau acgugacguc  uguaacgug   aug c
     g          cu         uca   a 


mirna_id: gga-let-7a-3
hairpin:
   U   GU                ---------u     u 
ggg GAG  AGUAGGUUGUAUAGUU          uaggg u
||| |||  ||||||||||||||||          ||||| a
ucc uuc  ucaucuaacauaucaa          guccc u
   u   ug                uagacugucc     g 


mirna_id: gga-let-7b
hairpin:
    aU                     ucaggguagugauuu 
cagg  GAGGUAGUAGGUUGUGUGGUU               u
||||  |||||||||||||||||||||                
gucc  uuccgucauccaacauaucaa               g
    -c                     uagaggacuaacccc 


mirna_id: gga-mir-99a
hairpin:
cca         A         UC   U       ugaa 
   auuggcaua ACCCGUAGA  CGA CUUGUGu    a
   ||||||||| |||||||||  ||| |||||||    u
   ugacugugU UGGGUAUCU  GCU GAACacg    g
gua         C         UC   C       ucac 


mirna_id: gga-mir-125b
hairpin:
a  aga   uu     UC  UG   C   A        ----g   u 
 uc   cuu  ccuag  CC  AGA CCU ACUUGUGA     guu u
 ||   |||  |||||  ||  ||| ||| ||||||||     |||  
 ag   gag  ggauc  gg  ucu gga ugaacacu     cga g
-  -gg   gc     ca  gu   c   c        aacaa   u 


mirna_id: gga-mir-155
hairpin:
u           U    A        -    c 
 gUUAAUGCUAA CGUG UAGGGGuu uuua c
 ||||||||||| |||| |||||||| ||||  
 caauuacgauu guac auccucag aagu u
a           -    -        u    c 


mirna_id: gga-mir-222a
hairpin:
-----  u  u  cc     auc             -     auu   ucuu 
     ug ag ug  cauca   gcucaguagucag uguag   cug    u
     || || ||  |||||   ||||||||||||| |||||   |||     
     ac uc ac  guagu   UGGGUCAUCGGUC ACAUC   gac    a
ucuau  -  u  -a     CUC             U     GAc   uaac 


mirna_id: gga-mir-221
hairpin:
gacug       uugg  cau     ug   u         auuu    -   u 
     uccaggu    gg   gaacc  gca acaauguag    cugu guu g
     |||||||    ||   |||||  ||| |||||||||    |||| ||| u
     agguccg    cC   UUUGG  CGU UGUUACAUC    GAca cga u
----a       ucga  ---     GU   C         ----    a   a 


mirna_id: gga-mir-92
hairpin:
- uu   ac            c   u       ug gcg 
 c  ucu  acagguugggau agu gcaaugc  u   u
 |  |||  |||||||||||| ||| |||||||  |    
 g  gga  uGUCCGGCCCUG UCA CGUUAUg  g   u
g uu   gu            U   -       gu ucu 


mirna_id: gga-mir-19b
hairpin:
       cuc              -  -      uc    --u     
cacuguu   ugguuaguuuugca gg uuugca  cagc   guau 
|||||||   |||||||||||||| || ||||||  ||||   ||| g
gugacgg   gucAGUCAAAACGU CC AAACGU  GUcg   caua 
       --u              A  U      --    ucu     


mirna_id: gga-mir-20a
hairpin:
-------ug      cuu    c   -A                 ----G    g 
         acagcu   guag acU  AAGUGCUUAUAGUGCAG     UAGu u
         ||||||   |||| |||  |||||||||||||||||     ||||  
         ugucga   cguc uga  uucacgaauauuacguc     auca u
acaucaaga      --u    a   aa                 aucua    c 


mirna_id: gga-mir-19a
hairpin:
g   u  u                 --      ---    gg 
 cag cu cuguuaguuuugcauag  uugcac   uaca  a
 ||| || |||||||||||||||||  ||||||   ||||  a
 guc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
-   c  u                 UA      Uug    aa 


mirna_id: gga-mir-18a
hairpin:
----gu         a   --   U   UC   U    A   -  aa u 
      gcuuuuugu cUA  AGG GCA  UAG GCAG UAg ug  g a
      ||||||||| |||  ||| |||  ||| |||| ||| ||  | g
      ugaagaaua ggu  ucc cgu  auc cguc auc ac  u a
cuguau         c   cu   u   ga   c    -   u  ga u 


mirna_id: gga-mir-17
hairpin:
     a       -CA        A  G     GUA  gaua 
gucag guaaugu   AAGUGCUU CA UGCAG   GU    u
||||| |||||||   |||||||| || |||||   ||     
caguu uauuacg   UUCACGGA GU ACGUC   ca    a
     g       aUG        A  G     Auc  agau 


mirna_id: gga-mir-16-1
hairpin:
gucu   a    c         -  A        U uuaaaac 
    guc uacu UAGCAGCAC GU AAUAUUGG G       u
    ||| |||| ||||||||| || |||||||| |        
    cgg auga gucgucgug ca uuaugacc c       g
---u   a    a         u  a        u uauaaau 


mirna_id: gga-mir-15a
hairpin:
     gcauaac UA        UA         gggu   g 
ccuug       g  GCAGCACA  AUGGUUUGU    uuu a
|||||       |  ||||||||  |||||||||    |||  
ggaac       c  cgucgugu  uaccggacg    gga a
     auaaaaa uc        ua         ---u   a 


mirna_id: gga-mir-26a
hairpin:
   a  ug  U         C          -   ucc 
guc cc  gU CAAGUAAUC AGGAUAGGCu gua   a
||| ||  || ||||||||| |||||||||| |||    
cgg gg  ca guucauugg ucuuauccgg cgu   u
   a  gu  c         u          u   ccu 


mirna_id: gga-mir-153
hairpin:
a      g      -             gu       -a  aa 
 gcgguu ccagug ucauuuuugugau  ugcagcu  gu  u
 |||||| |||||| |||||||||||||  |||||||  ||  a
 ugucaa gguuac AGUGAAAACACUG  ACGUUga  cg  u
g      a      u             AU       cc  ag 


mirna_id: gga-mir-148a
hairpin:
  ag            --a    ca    -   gu 
ga  caaaguucugug   cacu  gacu cug  u
||  ||||||||||||   ||||  |||| |||  a
cu  GUUUCAAGACAU   GUGA  CUga gau  c
  cU            CAC    --    c   ag 


