Accessors for PM, MM or background probes indices.
Accessors and replacement methods for the intensity/PM/MM/BG matrices.
Create set of colors, interpolating through a set of preferred colors.
Accessors for physical array coordinates.
Get container information for NimbleGen Tiling Arrays.
Function to get CRLMM summaries saved to disk
Helper function to extract color information for filenames on NimbleGen arrays.
Display a pseudo-image of a microarray chip
The oligo package: a tool for low-level analysis of oligonucleotide arrays
Access the allele information for PM probes.
Access the fragment length for PM probes.
RMA - Robust Multichip Average algorithm