Preprocessing tools for oligonucleotide arrays
Ben Bolstad, Vincent Carey, Wolfgang Huber, Harris
Jaffee, Jim MacDonald, Matt Settles
affyio (>= 1.35.0), affxparser (>= 1.39.4), DBI (>= 0.3.1),
ff, graphics, methods, preprocessCore (>= 1.29.0), RSQLite (>=
1.0.0), splines, stats, stats4, utils, zlibbioc
BSgenome.Hsapiens.UCSC.hg18, hapmap100kxba, pd.hg.u95av2,
pd.mapping50k.xba240, pd.huex.1.0.st.v2, pd.hg18.60mer.expr,
pd.hugene.1.0.st.v1, maqcExpression4plex, genefilter, limma,
RColorBrewer, oligoData, BiocStyle, knitr, RUnit, biomaRt,
AnnotationDbi, GenomeGraphs, RCurl, ACME, biomaRt,
AnnotationDbi, GenomeGraphs, RCurl
A package to analyze oligonucleotide arrays
        (expression/SNP/tiling/exon) at probe-level. It currently
        supports Affymetrix (CEL files) and NimbleGen arrays (XYS
        files).
AllGenerics.R methods-GenericArrays.R methods-GeneFeatureSet.R
methods-ExonFeatureSet.R methods-ExpressionFeatureSet.R
methods-ExpressionSet.R methods-LDS.R methods-FeatureSet.R
methods-SnpFeatureSet.R methods-SnpCnvFeatureSet.R
methods-TilingFeatureSet.R methods-HtaFeatureSet.R
methods-DBPDInfo.R methods-background.R methods-normalization.R
methods-summarization.R read.celfiles.R read.xysfiles.R
utils-general.R utils-selectors.R todo-snp.R functions-crlmm.R
functions-snprma.R justSNPRMA.R justCRLMM.R methods-snp6.R
methods-genotype.R methods-PLMset.R zzz.R
Microarray, OneChannel, TwoChannel, Preprocessing, SNP,
DifferentialExpression, ExonArray, GeneExpression, DataImport