Classes for high-throughput arrays supported by oligo and crlmm
Benilton Carvalho <beniltoncarvalho@gmail.com> and Robert Scharpf <rscharpf@jhsph.edu>
BiocGenerics (>= 0.3.2), Biobase (>= 2.17.8), methods,
graphics, IRanges (>= 2.1.10), GenomicRanges (>= 1.19.6),
SummarizedExperiment, Biostrings (>= 2.23.6), affyio (>=
1.23.2), ff, foreach, BiocInstaller, utils, S4Vectors, RSQLite
doMC, doMPI, doSNOW, doParallel, doRedis
hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6,
pd.genomewidesnp.5, pd.mapping50k.hind240,
pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp,
genomewidesnp6Crlmm (>= 1.0.7), genomewidesnp5Crlmm (>= 1.0.6),
RUnit, human370v1cCrlmm, SNPchip, VanillaICE, crlmm
This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.
AllClasses.R AllGenerics.R utils-general.R utils-lds.R
utils-parallel.R methods-gSet.R initialize-methods.R
methods-AlleleSet.R methods-AnnotatedDataFrame.R
methods-FeatureSet.R methods-AssayData.R
methods-SnpFeatureSet.R methods-oligoSnpSet.R
methods-CopyNumberSet.R methods-CNSet.R methods-PDInfo.R
methods-RangedDataCNV.R methods-SnpSet.R
methods-GenomeAnnotatedDataFrame.R methods-BeadStudioSet.R
methods-BeadStudioSetList.R methods-gSetList.R
methods-GRanges.R methods-SummarizedExperiment.R show-methods.R
functions.R zzz.R