Knowledge-based membrane-propensity scale from 1D_Helix in MPtopo databases (Punta-Maritan, 2003)

A knowledge-based scale for amino acid membrane propensity

Knowledge-based membrane-propensity scale from 3D_Helix in MPtopo databases (Punta-Maritan, 2003)

Linker propensity from all dataset (George-Heringa, 2003)

An analysis of protein domain linkers: their classification and role in protein folding

Linker propensity from 1-linker dataset (George-Heringa, 2003)

Linker propensity from 2-linker dataset (George-Heringa, 2003)

Linker propensity from 3-linker dataset (George-Heringa, 2003)

Linker propensity from small dataset (linker length is less than six residues) (George-Heringa, 2003)

Linker propensity from medium dataset (linker length is between six and 14 residues) (George-Heringa, 2003)

Linker propensity from long dataset (linker length is greater than 14 residues) (George-Heringa, 2003)

Linker propensity from helical (annotated by DSSP) dataset (George-Heringa, 2003)

Linker propensity from non-helical (annotated by DSSP) dataset (George-Heringa, 2003)

The stability scale from the knowledge-based atom-atom potential (Zhou-Zhou, 2004)

Quantifying the effect of burial of amino acid residues on protein stability

The relative stability scale extracted from mutation experiments (Zhou-Zhou, 2004)

Prediction of protein inter-domain linker regions by a hidden Markov model

Mean volumes of residues buried in protein interiors (Harpaz et al., 1994)

Harpaz, Y., Gerstein, M. and Chothia, C.

Structure 2, 641-649 (1994) (Disulfide bonded cysteine, 103.5)

Average volumes of residues (Pontius et al., 1996)

Pontius, J., Richelle, J. and Wodak, S.J.

Deviations from standard atomic volumes as a quality measure for protein crystal structures

J. Mol. Biol 264, 121-136 (1996) (Disulfide bonded cysteine, 102.4)

Hydrostatic pressure asymmetry index, PAI (Di Giulio, 2005)

A comparison of proteins from Pyrococcus furiosus and Pyrococcus abyssi: barophily in the physicochemical properties of amino acids and in the genetic code