Relative frequency of occurrence (Jones et al., 1992)

Jones, D.T., Taylor, W.R. and Thornton, J.M.

The rapid generation of mutation data matrices from protein sequences

Relative mutability (Jones et al., 1992)

Amino acid distribution (Jukes et al., 1975)

Jukes, T.H., Holmquist, R. and Moise, H.

Amino acid composition of proteins: Selection against the genetic code

Average relative probability of helix (Kanehisa-Tsong, 1980)

Local hydrophobicity stabilizes secondary structures in proteins

Average relative probability of beta-sheet (Kanehisa-Tsong, 1980)

Average relative probability of inner helix (Kanehisa-Tsong, 1980)

Average relative probability of inner beta-sheet (Kanehisa-Tsong, 1980)

Flexibility parameter for no rigid neighbors (Karplus-Schulz, 1985)

Prediction of chain flexibility in proteins

Flexibility parameter for one rigid neighbor (Karplus-Schulz, 1985)

Flexibility parameter for two rigid neighbors (Karplus-Schulz, 1985)

The Kerr-constant increments (Khanarian-Moore, 1980)

Prediction of protein function from sequence properties: Discriminant analysis of a data base

Side chain interaction parameter (Krigbaum-Rubin, 1971)

Local interactions as structure determinant for globular proteins

Side chain interaction parameter (Krigbaum-Komoriya, 1979)

Local interactions as a structure determinant for protein molecules: II

Fraction of site occupied by water (Krigbaum-Komoriya, 1979)

Side chain volume (Krigbaum-Komoriya, 1979)

Biochim. Biophys. Acta 576, 204-228 (1979) (Gly Pro 7.8)

A simple method for displaying the hydropathic character of a protein

Transfer free energy, CHP/water (Lawson et al., 1984)

Lawson, E.Q., Sadler, A.J., Harmatz, D., Brandau, D.T., Micanovic, R. MacElroy, R.D. and Middaught, C.R.

A simple experimental model for hydrophobic interactions in proteins

A simplified representation of protein conformations for rapid simulation of protein folfing

Distance between C-alpha and centroid of side chain (Levitt, 1976)

Side chain angle theta(AAR) (Levitt, 1976)

Side chain torsion angle phi(AAAR) (Levitt, 1976)