Hydrophobic characteristics of folded proteins

Prog Biophys Mol Biol. 59, 57-103 (1993)

Hydrophobicity coefficient in RP-HPLC, C18 with 0.1%TFA/MeCN/H2O (Wilce et al. 1995)

Wilce, M.C., Aguilar, M.I. and Hearn, M.T.

Physicochemical basis of amino acid hydrophobicity scales: evaluation of four new scales of amino acid hydrophobicity coefficients derived from RP-HPLC of peptides

Hydrophobicity coefficient in RP-HPLC, C8 with 0.1%TFA/MeCN/H2O (Wilce et al. 1995)

Hydrophobicity coefficient in RP-HPLC, C4 with 0.1%TFA/MeCN/H2O (Wilce et al. 1995)

Hydrophobicity coefficient in RP-HPLC, C18 with 0.1%TFA/2-PrOH/MeCN/H2O (Wilce et al. 1995)

Hydrophilicity scale (Kuhn et al., 1995)

Kuhn, L.A., Swanson, C.A., Pique, M.E., Tainer, J.A. and Getzoff, E.D.

Atomic and residue hydrophilicity in the context of folded protein structures

Retention coefficient at pH 2 (Guo et al., 1986)

Guo, D., Mant, C.T., Taneja, A.K., Parker, J.M. and Hodges, R.S.

Prediction of peptide retention times in reversed-phase high-performance liquid chromatography; I. determination of retention coefficients of amino acid residues of model synthetic peptides

Modified Kyte-Doolittle hydrophobicity scale (Juretic et al., 1998)

Juretic, D., Lucic, B., Zucic, D. and Trinajstic, N.

Protein transmembrane structure: recognition and prediction by using hydrophobicity scales through preference functions

Theoretical and Computational Chemistry, 5, 405-445 (1998)

Interactivity scale obtained from the contact matrix (Bastolla et al., 2005)

Bastolla, U., Porto M., Roman H.E. and Vendruscolo M.

Principal eigenvector of contact matrices and hydrophobicity profiles in prote

Interactivity scale obtained by maximizing the mean of correlation coefficient over single-domain globular proteins (Bastolla et al., 2005)

Interactivity scale obtained by maximizing the mean of correlation coefficient over pairs of sequences sharing the TIM barrel fold (Bastolla et al., 2005)

Linker propensity index (Suyama-Ohara, 2003)

DomCut: Prediction of inter-domain linker regions in amino acid sequences