Adjust for batch effects using an empirical Bayes framework
A function for estimating the probability that each gene is an empirical control
A function for quickly calculating f statistic p-values for use in sva
A function for quickly calculating f statistics for use in sva
A function for performing frozen surrogate variable analysis as proposed in Parker, Corrada Bravo and Leek 2013
A function for estimating surrogate variables by estimating empirical control probes
A function for calculating the number of surrogate variables to estimate in a model
A function for estimating surrogate variables with the two step approach of Leek and Storey 2007
A function for estimating surrogate variables using a supervised approach
sva: a package for removing artifacts from microarray and sequencing data
A function for post-hoc checking of an sva object to check for degenerate cases.
A function for estimating surrogate variables for count based RNA-seq data.