Affymetrix zebrafish annotation data (chip zebrafish)

[Up] [Top]

Documentation for package ‘zebrafish.db’ version 3.2.2

Help Pages

zebrafish Bioconductor annotation data package
zebrafish.db Bioconductor annotation data package
zebrafishACCNUM Map Manufacturer identifiers to Accession Numbers
zebrafishALIAS2PROBE Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
zebrafishCHR Map Manufacturer IDs to Chromosomes
zebrafishCHRLENGTHS A named vector for the length of each of the chromosomes
zebrafishCHRLOC Map Manufacturer IDs to Chromosomal Location
zebrafishCHRLOCEND Map Manufacturer IDs to Chromosomal Location
zebrafishENSEMBL Map Ensembl gene accession numbers with Entrez Gene identifiers
zebrafishENSEMBL2PROBE Map Ensembl gene accession numbers with Entrez Gene identifiers
zebrafishENTREZID Map between Manufacturer Identifiers and Entrez Gene
zebrafishENZYME Maps between Manufacturer IDs and Enzyme Commission (EC) Numbers
zebrafishENZYME2PROBE Maps between Manufacturer IDs and Enzyme Commission (EC) Numbers
zebrafishGENENAME Map between Manufacturer IDs and Genes
zebrafishGO Maps between manufacturer IDs and Gene Ontology (GO) IDs
zebrafishGO2ALLPROBES Maps between manufacturer IDs and Gene Ontology (GO) IDs
zebrafishGO2PROBE Maps between manufacturer IDs and Gene Ontology (GO) IDs
zebrafishLOCUSID Map between Manufacturer Identifiers and Entrez Gene
zebrafishMAPCOUNTS Number of mapped keys for the maps in package zebrafish.db
zebrafishORGANISM The Organism information for zebrafish
zebrafishORGPKG The Organism information for zebrafish
zebrafishPATH Mappings between probe identifiers and KEGG pathway identifiers
zebrafishPATH2PROBE Mappings between probe identifiers and KEGG pathway identifiers
zebrafishPMID Maps between Manufacturer Identifiers and PubMed Identifiers
zebrafishPMID2PROBE Maps between Manufacturer Identifiers and PubMed Identifiers
zebrafishREFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
zebrafishSYMBOL Map between Manufacturer Identifiers and Gene Symbols
zebrafishUNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers
zebrafishUNIPROT Map Uniprot accession numbers with Entrez Gene identifiers
zebrafishUNIPROT2PROBE Map Uniprot accession numbers with Entrez Gene identifiers
zebrafishZFIN Map Zfin accession numbers with Entrez Gene identifiers
zebrafishZFIN2PROBE Map Zfin accession numbers with Entrez Gene identifiers
zebrafish_dbconn Collect information about the package annotation DB
zebrafish_dbfile Collect information about the package annotation DB
zebrafish_dbInfo Collect information about the package annotation DB
zebrafish_dbschema Collect information about the package annotation DB