ZINBA: Zero-Inflation Negative Binomial Algorithm

[Up] [Top]

Documentation for package ‘zinba’ version 2.02.03

Help Pages

alignAdjust Custom Alignability Track Generation
basealigncount Get SBC (basecount) for Mapped Sample Reads
basecountimport Import SBC (basecounts) Given Coordinate File
buildwindowdata Build Datasets for Mixture Regression Model
covariateselect Determine Best Sets of Covariates to Model Each Component
covariateselect Determine Best Sets of Covariates to Model Each Component
getrefinedpeaks Refine Peak Boundaries from Collapsed Significant Regions
getsigwindows Determine Significantly Enriched Windows
peakbound Refine Peak Boundaries from SBC Collapsed Significant Regions
run.zinba Run Analysis pipeline
summary.zinba Printing summary of the ZINBA peak finding software
twobittofa Convert Fasta Formatted Files From .2bit
zinba ZINBA convenience function